Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004312

Physical Location & Seq

Genomic Coordinates Reverse (-)

26692702 .. 26695384

Gene Structure 2683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G66840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1656 bp

ATGTCGGCGGCGGAGAAGGTAATCATTGATCTCTGTAGCTCGGAAGAGGAGGAAGAAGATGTTTTCGGTGATGAGAATAACTATGACGAAACGGAAGAGGAAGAAGACGAAGATACGAATTCAAGTGAGGATGATAGCGATTGGAGCCACGACGATGATGATGCTACAGAGTCAGATGTTGAAGCTGACGAGATCGGAGTAAAAGGCGATAACGATGATGGTGATGAAGATGACAAAGTCACTCGCCTCCTCACAGCCGGAAGCGATTTGAAATCTGTAAATGTGAAAGAGTGCAAAGCATATCTGAGAAAGCATGGTCTAAGATTATCTGGCACCAAACCAGTTTGCATTGACAGAATTCTTGAGCATTGGAGGATTAAAGATGGAACTGGAGAAGCAGTGTATCCAAAATCATCCTTTGCTATCAATTGTAAAGGTGATGTCTGCAAAGGAGACATTGTTTTGTTTACACAGAAGGTTCACCACAAGTATGAAAAGATGAAAAAGAGTGGAAATATTATGGGGAGAAGAACTGTCGCTGGCCAGGTTGTTAAAGAAAGCTATGGTACTGCTAAACAACAACACACGTTCACTATTGAAGTGCTCTGGTGTGAGGGGACACAGAAATTGCCACCTTTGTATCCATTACTAGTCAAAGGACGAAATCTTTATAGGTTAATGACCTTGAGGCAGCGATGGCCAAATGAAGAAGACAGAGTCAAAGTTCTTAACGAAAAGCATAACCGTGGTGCCGCAGCAAGAAAGGTTATGAGAGAAAGGAAAATTAAGTCAGGCTATGTACTAAAAGATGGAAGACTTCAAAAGCCTGGTCATGTGAAGAAGCCTTGTCAAGTAAAGACAAGAAAAAACGAGAAAGATGAGAATCTAACCCAGAGGCTTAGACAAAACACTCCCGCTAATCATTCACTTGTTGCTTTTCCAAACCAAAATCCTTCACAGGGCCATAAGAATCATCCAACACAGTTGACAGATATGAATCCCGCTAATTTCTACACTTCTCGACCACATGCTCCTCGTTCACATGCACCTCCTACATATGCTCCTCGACCACATGCTCCTCGTTCGTACGCTCCTATCAATTCACATCTTCCTCGTCCAAATATTCCTCCTTATCATTCCTATACTTATTCAGAACAACAAAACCAAACAAACCAACGACCACCACCTGCCTCCTATACTTATTCAACACAACAAAACCAAACAAACCAAAGACCACCACCTGCCTCCTATACTTATCCAACACAGCAAAACCAAACAAACCAAAGACCACCACCAGCTTTCTACATCAGAAGAACTGCCTCTAATGCTCCGCAGGGACAAGCATCATTCAACCCACATGTCAATACACACACTGTGCCGGTTACTCATCAGAGGAGACCATACCAGAACCCCCATGTCAGCTCGAACAGTGGCTACAACCTGGGAGTGAGGGACTTGGAACACTTCTCGCATATGATGATAAGCCACAGAAGAGAAGGAGACACATACAGGCAGAGTGAGGTCACTCAAGGGCCATACATGAACCATCAGACCTACCATTCCAACTTCAATAGTAGCTACAACCATGGGGCAAGGGACTTGTACATGGTAAACAACAGAAGAGAAGGAGACAATCACAGACCAAATTATCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009889 GO:0009909 GO:0009911 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAP

Protein Analysis

551

Amino Acids

63.2

Weight (kDa)

8.57

Isoelectric Point (pI)

46.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAP	PF02037	89 - 125	1.8e-10	SAP domain
DUF7699	PF24766	149 - 233	2.2e-39	Domain of unknown function (DUF7699)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66840 AT5G66840
fragaria_vesca	FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670
malus_domestica	MD02G1168400.v1.1
prunus_persica	Prupe.7G136600_v2.0.a1 Prupe.7G136600_v2.0.a1 Prupe.7G136600_v2.0.a1
pyrus_communis	pycom02g13550 pycom15g24350 pycom15g24360
rosa_chinensis	RchiOBHm_Chr2g0104981
rosa_laevigata	RLG00000017385
rosa_multiflora	Rmu_sc0000641.1_g000032
rosa_roxburghii	Rroxscaffold_2G00138610
rosa_rugosa	Rorug02G0124300 Rorug02G0124400 Rorug02G0124500 Rorug02G0124600 Rorug02G0124700 Rorug02G0124800
rosa_samantha	Rh2AG175100 Rh2CG179700 Rh2DG181500
rosa_wichuraiana	Rw2G013760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	1195, 1249
Acc36I	ACCTGC	2 cut(s)	1195, 1249
AccB1I	GGYRCC	2 cut(s)	332, 749
AciI	CCGC	6 cut(s)	8, 11, 753, 915, 1002, 1331
AcoI	YGGCCR	2 cut(s)	541, 698
AcsI	RAATTY	2 cut(s)	118, 357
AdeI	CACNNNGTG	1 cut(s)	1375
AfaI	GTAC	4 cut(s)	568, 801, 1088, 1604
AfiI	CCNNNNNNNGG	1 cut(s)	959
AflIII	ACRYGT	2 cut(s)	585, 1357
AgsI	TTSAA	8 cut(s)	123, 182, 271, 599, 821, 1206, 1351, 1570
AhlI	ACTAGT	1 cut(s)	649
AjnI	CCWGG	3 cut(s)	543, 826, 1440
AluBI	AGCT	6 cut(s)	39, 185, 561, 1298, 1422, 1578
AluI	AGCT	6 cut(s)	39, 185, 561, 1298, 1422, 1578
Alw21I	GWGCWC	1 cut(s)	606
Alw26I	GTCTC	4 cut(s)	447, 1390, 1494, 1623
AoxI	GGCC	4 cut(s)	541, 698, 961, 1532
ApeKI	GCWGC	2 cut(s)	691, 755
ApoI	RAATTY	2 cut(s)	118, 357
ArsI	GACNNNNNNTTYG	2 cut(s)	814, 846
AspS9I	GGNCC	2 cut(s)	961, 1532
AsuHPI	GGTGA	4 cut(s)	80, 233, 449, 473
BaeI	ACNNNNGTAYC	2 cut(s)	623, 656
BalI	TGGCCA	2 cut(s)	543, 700
BanI	GGYRCC	2 cut(s)	332, 749
BbsI	GAAGAC	3 cut(s)	111, 717, 820
Bbv12I	GWGCWC	1 cut(s)	606
BbvI	GCAGC	2 cut(s)	703, 767
BccI	CCATC	5 cut(s)	212, 377, 690, 803, 1554
BcgI	CGANNNNNNTGC	2 cut(s)	143, 177
BciT130I	CCWGG	3 cut(s)	545, 828, 1442
BciVI	GTATCC	2 cut(s)	414, 651
BcoDI	GTCTC	4 cut(s)	447, 1390, 1494, 1623
BcuI	ACTAGT	1 cut(s)	649
BfaI	CTAG	1 cut(s)	650
BfmI	CTRYAG	2 cut(s)	34, 165
BfuAI	ACCTGC	2 cut(s)	1195, 1249
BfuI	GTATCC	2 cut(s)	414, 651
BisI	GCNGC	4 cut(s)	9, 692, 753, 756
BlsI	GCNGC	4 cut(s)	10, 693, 754, 757
Bme1390I	CCNGG	3 cut(s)	545, 828, 1442
BmgT120I	GGNCC	2 cut(s)	961, 1532
BmiI	GGNNCC	3 cut(s)	146, 334, 751
BmrFI	CCNGG	3 cut(s)	545, 828, 1442
BmsI	GCATC	2 cut(s)	151, 1352
BpiI	GAAGAC	3 cut(s)	111, 717, 820
BpmI	CTGGAG	1 cut(s)	411
BpuEI	CTTGAG	3 cut(s)	383, 706, 1512
Bsa29I	ATCGAT	1 cut(s)	1651
BsaBI	GATNNNNATC	2 cut(s)	882, 996
BsaI	GGTCTC	1 cut(s)	1390
BsaJI	CCNNGG	3 cut(s)	745, 1441, 1585
BsaXI	ACNNNNNCTCC	6 cut(s)	384, 414, 444, 474, 1045, 1075
Bsc4I	CCNNNNNNNGG	1 cut(s)	959
Bse118I	RCCGGY	1 cut(s)	1378
Bse1I	ACTGG	2 cut(s)	341, 394
Bse8I	GATNNNNATC	2 cut(s)	882, 996
BseBI	CCWGG	3 cut(s)	545, 828, 1442
BseCI	ATCGAT	1 cut(s)	1651
BseDI	CCNNGG	3 cut(s)	745, 1441, 1585
BseGI	GGATG	3 cut(s)	136, 413, 973
BseJI	GATNNNNATC	2 cut(s)	882, 996
BseLI	CCNNNNNNNGG	1 cut(s)	959
BseMII	CTCAG	1 cut(s)	296
BseNI	ACTGG	2 cut(s)	341, 394
BseRI	GAGGAG	6 cut(s)	62, 239, 1023, 1053, 1068, 1408
BseXI	GCAGC	2 cut(s)	703, 767
BshFI	GGCC	4 cut(s)	543, 700, 963, 1534
BshNI	GGYRCC	2 cut(s)	332, 749
BshVI	ATCGAT	1 cut(s)	1651
BsiHKAI	GWGCWC	1 cut(s)	606
BsiSI	CCGG	2 cut(s)	258, 1379
BsiWI	CGTACG	1 cut(s)	1086
BslFI	GGGAC	4 cut(s)	631, 1350, 1466, 1610
BslI	CCNNNNNNNGG	1 cut(s)	959
BsmAI	GTCTC	4 cut(s)	447, 1390, 1494, 1623
BsmFI	GGGAC	4 cut(s)	631, 1350, 1466, 1610
BsnI	GGCC	4 cut(s)	543, 700, 963, 1534
Bso31I	GGTCTC	1 cut(s)	1390
Bsp1286I	GDGCHC	1 cut(s)	606
Bsp1407I	TGTACA	1 cut(s)	1602
Bsp143I	GATC	2 cut(s)	28, 192
Bsp19I	CCATGG	1 cut(s)	1585
BspACI	CCGC	6 cut(s)	8, 11, 753, 915, 1002, 1331
BspANI	GGCC	4 cut(s)	543, 700, 963, 1534
BspCNI	CTCAG	1 cut(s)	297
BspDI	ATCGAT	1 cut(s)	1651
BspLI	GGNNCC	3 cut(s)	146, 334, 751
BspMI	ACCTGC	2 cut(s)	1195, 1249
BspT107I	GGYRCC	2 cut(s)	332, 749
BspTNI	GGTCTC	1 cut(s)	1390
BsrFI	RCCGGY	1 cut(s)	1378
BsrGI	TGTACA	1 cut(s)	1602
BsrI	ACTGG	2 cut(s)	341, 394
BssAI	RCCGGY	1 cut(s)	1378
BssECI	CCNNGG	3 cut(s)	745, 1441, 1585
BssMI	GATC	2 cut(s)	28, 192
BssT1I	CCWWGG	1 cut(s)	1585
Bst2UI	CCWGG	3 cut(s)	545, 828, 1442
Bst4CI	ACNGT	5 cut(s)	535, 746, 984, 1375, 1430
Bst6I	CTCTTC	4 cut(s)	39, 90, 1486, 1615
BstAUI	TGTACA	1 cut(s)	1602
BstC8I	GCNNGC	1 cut(s)	541
BstDEI	CTNAG	3 cut(s)	305, 320, 899
BstDSI	CCRYGG	2 cut(s)	745, 1585
BstF5I	GGATG	3 cut(s)	136, 413, 973
BstKTI	GATC	2 cut(s)	31, 195
BstMAI	GTCTC	4 cut(s)	447, 1390, 1494, 1623
BstMBI	GATC	2 cut(s)	28, 192
BstMWI	GCNNNNNNNGC	3 cut(s)	144, 697, 1325
BstNI	CCWGG	3 cut(s)	545, 828, 1442
BstNSI	RCATGY	4 cut(s)	1031, 1046, 1076, 1361
BstSCI	CCNGG	3 cut(s)	543, 826, 1440
BstSFI	CTRYAG	2 cut(s)	34, 165
BstV1I	GCAGC	2 cut(s)	703, 767
BstV2I	GAAGAC	3 cut(s)	111, 717, 820
Bsu15I	ATCGAT	1 cut(s)	1651
BsuI	GTATCC	2 cut(s)	414, 651
BsuRI	GGCC	4 cut(s)	543, 700, 963, 1534
BsuTUI	ATCGAT	1 cut(s)	1651
BtgI	CCRYGG	2 cut(s)	745, 1585
BtgZI	GCGATG	1 cut(s)	709
BtsCI	GGATG	3 cut(s)	136, 413, 973
BtsI	GCAGTG	1 cut(s)	405
BtsIMutI	CAGTG	3 cut(s)	405, 1371, 1435
BveI	ACCTGC	2 cut(s)	1195, 1249
Cac8I	GCNNGC	1 cut(s)	541
Cfr10I	RCCGGY	1 cut(s)	1378
Cfr13I	GGNCC	2 cut(s)	961, 1532
ClaI	ATCGAT	1 cut(s)	1651
Csp6I	GTAC	4 cut(s)	567, 800, 1087, 1603
CviQI	GTAC	4 cut(s)	567, 800, 1087, 1603
DdeI	CTNAG	3 cut(s)	305, 320, 899
DpnI	GATC	2 cut(s)	30, 194
DpnII	GATC	2 cut(s)	28, 192
DraIII	CACNNNGTG	1 cut(s)	1375
EaeI	YGGCCR	2 cut(s)	541, 698
Eam1104I	CTCTTC	4 cut(s)	39, 90, 1486, 1615
EarI	CTCTTC	4 cut(s)	39, 90, 1486, 1615
EciI	GGCGGA	1 cut(s)	26
Eco130I	CCWWGG	1 cut(s)	1585
Eco31I	GGTCTC	1 cut(s)	1390
EcoRI	GAATTC	2 cut(s)	118, 357
EcoRII	CCWGG	3 cut(s)	543, 826, 1440
EcoT14I	CCWWGG	1 cut(s)	1585
ErhI	CCWWGG	1 cut(s)	1585
FaqI	GGGAC	4 cut(s)	631, 1350, 1466, 1610
FauI	CCCGC	2 cut(s)	922, 1009
FauNDI	CATATG	2 cut(s)	1057, 1473
Fnu4HI	GCNGC	4 cut(s)	9, 692, 753, 756
FokI	GGATG	3 cut(s)	143, 400, 960
Fsp4HI	GCNGC	4 cut(s)	9, 692, 753, 756
FspBI	CTAG	1 cut(s)	650
GluI	GCNGC	4 cut(s)	9, 692, 753, 756
GsuI	CTGGAG	1 cut(s)	411
HaeIII	GGCC	4 cut(s)	543, 700, 963, 1534
HapII	CCGG	2 cut(s)	258, 1379
HincII	GTYRAC	1 cut(s)	987
HindII	GTYRAC	1 cut(s)	987
HinfI	GANTC	5 cut(s)	170, 717, 883, 970, 997
HpaII	CCGG	2 cut(s)	258, 1379
HphI	GGTGA	4 cut(s)	80, 233, 449, 473
Hpy166II	GTNNAC	6 cut(s)	468, 481, 591, 987, 1040, 1612
Hpy188I	TCNGA	8 cut(s)	43, 175, 197, 306, 1153, 1310, 1392, 1551
Hpy188III	TCNNGA	2 cut(s)	362, 1020
Hpy8I	GTNNAC	6 cut(s)	468, 481, 591, 987, 1040, 1612
Hpy99I	CGWCG	1 cut(s)	155
HpyAV	CCTTC	5 cut(s)	10, 469, 963, 1490, 1619
HpyCH4III	ACNGT	5 cut(s)	535, 746, 984, 1375, 1430
HpyCH4IV	ACGT	1 cut(s)	587
HpyCH4V	TGCA	4 cut(s)	294, 348, 447, 1046
HpyF10VI	GCNNNNNNNGC	3 cut(s)	144, 697, 1325
HpyF3I	CTNAG	3 cut(s)	305, 320, 899
HpySE526I	ACGT	1 cut(s)	587
Kzo9I	GATC	2 cut(s)	28, 192
LmnI	GCTCC	6 cut(s)	144, 1036, 1066, 1081, 1096, 1333
Lsp1109I	GCAGC	2 cut(s)	703, 767
LweI	GCATC	2 cut(s)	151, 1352
MaeI	CTAG	1 cut(s)	650
MaeII	ACGT	1 cut(s)	587
MaeIII	GTNAC	3 cut(s)	238, 1381, 1522
MalI	GATC	2 cut(s)	30, 194
MboI	GATC	2 cut(s)	28, 192
MfeI	CAATTG	1 cut(s)	427
MhlI	GDGCHC	1 cut(s)	606
MlsI	TGGCCA	2 cut(s)	543, 700
MluCI	AATT	8 cut(s)	118, 357, 427, 626, 783, 1006, 1099, 1645
MluNI	TGGCCA	2 cut(s)	543, 700
MlyI	GAGTC	2 cut(s)	179, 726
MmeI	TCCRAC	3 cut(s)	1001, 1283, 1587
Mox20I	TGGCCA	2 cut(s)	543, 700
MscI	TGGCCA	2 cut(s)	543, 700
MseI	TTAA	5 cut(s)	378, 552, 677, 729, 786
MslI	CAYNNNNRTG	3 cut(s)	153, 489, 744
Msp20I	TGGCCA	2 cut(s)	543, 700
MspI	CCGG	2 cut(s)	258, 1379
MspR9I	CCNGG	3 cut(s)	545, 828, 1442
MunI	CAATTG	1 cut(s)	427
MvaI	CCWGG	3 cut(s)	545, 828, 1442
MwoI	GCNNNNNNNGC	3 cut(s)	144, 697, 1325
NcoI	CCATGG	1 cut(s)	1585
NdeI	CATATG	2 cut(s)	1057, 1473
NdeII	GATC	2 cut(s)	28, 192
NlaIV	GGNNCC	3 cut(s)	146, 334, 751
NmuCI	GTSAC	2 cut(s)	238, 1522
NspI	RCATGY	4 cut(s)	1031, 1046, 1076, 1361
PaqCI	CACCTGC	2 cut(s)	1195, 1249
PciI	ACATGT	1 cut(s)	1357
PfeI	GAWTC	3 cut(s)	883, 970, 997
Pfl23II	CGTACG	1 cut(s)	1086
PflFI	GACNNNGTC	2 cut(s)	236, 716
PkrI	GCNGC	4 cut(s)	10, 693, 754, 757
PleI	GAGTC	2 cut(s)	178, 725
PpsI	GAGTC	2 cut(s)	178, 725
PscI	ACATGT	1 cut(s)	1357
Psp6I	CCWGG	3 cut(s)	543, 826, 1440
PspGI	CCWGG	3 cut(s)	543, 826, 1440
PspLI	CGTACG	1 cut(s)	1086
PspN4I	GGNNCC	3 cut(s)	146, 334, 751
PspPI	GGNCC	2 cut(s)	961, 1532
PsrI	GAACNNNNNNTAC	2 cut(s)	1418, 1450
PsyI	GACNNNGTC	2 cut(s)	236, 716
RsaI	GTAC	4 cut(s)	568, 801, 1088, 1604
RsaNI	GTAC	4 cut(s)	567, 800, 1087, 1603
RseI	CAYNNNNRTG	3 cut(s)	153, 489, 744
SaqAI	TTAA	5 cut(s)	378, 552, 677, 729, 786
SatI	GCNGC	4 cut(s)	9, 692, 753, 756
Sau3AI	GATC	2 cut(s)	28, 192
Sau96I	GGNCC	2 cut(s)	961, 1532
SchI	GAGTC	2 cut(s)	179, 726
ScrFI	CCNGG	3 cut(s)	545, 828, 1442
SduI	GDGCHC	1 cut(s)	606
SfaNI	GCATC	2 cut(s)	151, 1352
SfcI	CTRYAG	2 cut(s)	34, 165
SmiMI	CAYNNNNRTG	3 cut(s)	153, 489, 744
SmlI	CTYRAG	3 cut(s)	362, 685, 1527
SmoI	CTYRAG	3 cut(s)	362, 685, 1527
SpeI	ACTAGT	1 cut(s)	649
Sse9I	AATT	8 cut(s)	118, 357, 427, 626, 783, 1006, 1099, 1645
SsiI	CCGC	6 cut(s)	8, 11, 753, 915, 1002, 1331
SspI	AATATT	2 cut(s)	517, 1123
SspMI	CTAG	1 cut(s)	650
StyD4I	CCNGG	3 cut(s)	543, 826, 1440
StyI	CCWWGG	1 cut(s)	1585
TaaI	ACNGT	5 cut(s)	535, 746, 984, 1375, 1430
TaiI	ACGT	1 cut(s)	590
TaqI	TCGA	4 cut(s)	1021, 1066, 1424, 1651
TasI	AATT	8 cut(s)	118, 357, 427, 626, 783, 1006, 1099, 1645
TatI	WGTACW	2 cut(s)	799, 1602
TauI	GCSGC	2 cut(s)	11, 755
TfiI	GAWTC	3 cut(s)	883, 970, 997
Tru1I	TTAA	5 cut(s)	378, 552, 677, 729, 786
Tru9I	TTAA	5 cut(s)	378, 552, 677, 729, 786
TscAI	CASTG	3 cut(s)	405, 1378, 1435
TseFI	GTSAC	2 cut(s)	238, 1522
TseI	GCWGC	2 cut(s)	691, 755
Tsp45I	GTSAC	2 cut(s)	238, 1522
TspDTI	ATGAA	6 cut(s)	240, 507, 515, 720, 1010, 1556
TspGWI	ACGGA	1 cut(s)	107
TspRI	CASTG	3 cut(s)	405, 1378, 1435
Tth111I	GACNNNGTC	2 cut(s)	236, 716
XapI	RAATTY	2 cut(s)	118, 357
XceI	RCATGY	4 cut(s)	1031, 1046, 1076, 1361
XspI	CTAG	1 cut(s)	650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.