Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004312

Physical Location & Seq

Genomic Coordinates Reverse (-)

10688085 .. 10690309

Gene Structure 2225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0124300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGCTTTCAGTCGATTTTCAAAGCTCGTACTCTCTCTCTGTCTCATTCACTTCATTTCAGGTGGTTACTCGGCGACGTTTACGATTACAAACAAGTGCAGCAACACAATTTGGCCGGGCATTTTGTCAAACTCCGGGACGGCGCAGCTTTCTACTACCGGGTTTGCTTTACAATCCGGGGAGTCTAGCTCGATAGCCGTTCCGGCTTCGTGGTCGGGTAGGCTATGGGGGCGGACTCTGTGCTCTCAGGACCCGACCACGGGAAAGTTCAGTTGCGTTACGGGAGATTGTGGCTCGGGTACTGTCGATTGTGCCGGAAGTGGAGCTGCGCCTCCGGCAAGTCTGGCGGAGTTTACCCTGAACGGAGCGGACGGGCTGGACTTCTACGACGTCAGCCTCGTGGACGGATACAACCTCCCCATGTTGGTCGTGCCCCAGGGCGGGACCGGAGGCAACTGCACCACCACGGGCTGCGTCGTGGACCTCAACGCCGGGTGTCCGTCGGAGCTGAAGGTGACCACGGCGAGTGACAGTGGCGTGGCGTGTAAAAGCGCGTGCGAGGCGTTTGGGGATCCCATGTACTGCTGCAGTGGGGCGTACGCGACCCCTGACACCTGCAAACCGAGCTCGTACTCTCAGTTCTTTAAAAATGCGTGCCCCAAAGCGTACAGCTACGCCTATGACGACGGCACCAGCACCTTCACTTGTGCCGCCGCCGACTACCTCATCACTTTCTGCCCAGCCCCCGCCACCAGTGTGAAGTCGGCGAATGGCCAAATCCCTGTTGCGGCCGGCGTCTCAGCCGGTTCACGTCGTTCGATACCGAACGTCATCGTTTTCGCCACCTTGTTGGCGGCAGTTTGGCGGTTGCTGCCGCTATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009889 GO:0009909 GO:0009911 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAP

Protein Analysis

294

Amino Acids

30.18

Weight (kDa)

5.05

Isoelectric Point (pI)

38.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thaumatin	PF00314	31 - 247	3.1e-85	Thaumatin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66840 AT5G66840
fragaria_vesca	FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670
malus_domestica	MD02G1168400.v1.1
prunus_persica	Prupe.7G136600_v2.0.a1 Prupe.7G136600_v2.0.a1 Prupe.7G136600_v2.0.a1
pyrus_communis	pycom02g13550 pycom15g24350 pycom15g24360
rosa_chinensis	RchiOBHm_Chr2g0104981
rosa_laevigata	RLG00000017385
rosa_multiflora	Rmu_sc0000641.1_g000032
rosa_roxburghii	Rroxscaffold_2G00138610
rosa_rugosa	Rorug02G0124300 Rorug02G0124400 Rorug02G0124500 Rorug02G0124600 Rorug02G0124700 Rorug02G0124800
rosa_samantha	Rh2AG175100 Rh2CG179700 Rh2DG181500
rosa_wichuraiana	Rw2G013760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	623
AatII	GACGTC	1 cut(s)	393
Acc36I	ACCTGC	1 cut(s)	623
AccB1I	GGYRCC	1 cut(s)	689
AccBSI	CCGCTC	1 cut(s)	368
AccII	CGCG	2 cut(s)	554, 602
AclWI	GGATC	2 cut(s)	566, 579
AcoI	YGGCCR	3 cut(s)	113, 772, 789
AcuI	CTGAAG	1 cut(s)	530
AcyI	GRCGYC	2 cut(s)	390, 795
AfaI	GTAC	6 cut(s)	30, 301, 581, 599, 632, 668
AfiI	CCNNNNNNNGG	6 cut(s)	259, 260, 424, 440, 441, 787
AgsI	TTSAA	1 cut(s)	21
AjiI	CACGTC	1 cut(s)	812
AjnI	CCWGG	1 cut(s)	435
AleI	CACNNNNGTG	1 cut(s)	755
AluBI	AGCT	7 cut(s)	25, 148, 189, 326, 508, 627, 672
AluI	AGCT	7 cut(s)	25, 148, 189, 326, 508, 627, 672
Alw21I	GWGCWC	2 cut(s)	245, 629
Alw26I	GTCTC	2 cut(s)	47, 802
AlwI	GGATC	2 cut(s)	566, 579
Ama87I	CYCGRG	1 cut(s)	295
AoxI	GGCC	3 cut(s)	113, 772, 789
ApeKI	GCWGC	6 cut(s)	99, 145, 326, 471, 585, 871
AspLEI	GCGC	3 cut(s)	145, 331, 554
AspS9I	GGNCC	3 cut(s)	250, 444, 481
AsuC2I	CCSGG	5 cut(s)	117, 136, 160, 178, 493
AsuHPI	GGTGA	1 cut(s)	526
AvaI	CYCGRG	1 cut(s)	295
AvaII	GGWCC	3 cut(s)	250, 444, 481
BaeGI	GKGCMC	2 cut(s)	435, 659
BalI	TGGCCA	1 cut(s)	774
BamHI	GGATCC	1 cut(s)	571
BanI	GGYRCC	1 cut(s)	689
BanII	GRGCYC	1 cut(s)	629
BauI	CACGAG	1 cut(s)	398
Bbv12I	GWGCWC	2 cut(s)	245, 629
BbvI	GCAGC	6 cut(s)	111, 157, 313, 458, 572, 858
BceAI	ACGGC	4 cut(s)	156, 182, 537, 703
BciT130I	CCWGG	1 cut(s)	437
BciVI	GTATCC	1 cut(s)	401
BcnI	CCSGG	5 cut(s)	117, 136, 160, 178, 493
BcoDI	GTCTC	2 cut(s)	47, 802
BfaI	CTAG	1 cut(s)	186
BfmI	CTRYAG	1 cut(s)	586
BfuAI	ACCTGC	1 cut(s)	623
BfuI	GTATCC	1 cut(s)	401
BglI	GCCNNNNNGGC	1 cut(s)	203
Bme1390I	CCNGG	6 cut(s)	117, 136, 160, 178, 437, 493
Bme18I	GGWCC	3 cut(s)	250, 444, 481
BmeT110I	CYCGRG	1 cut(s)	295
BmgBI	CACGTC	1 cut(s)	812
BmgT120I	GGNCC	3 cut(s)	250, 444, 481
BmiI	GGNNCC	4 cut(s)	252, 445, 573, 691
BmrFI	CCNGG	6 cut(s)	117, 136, 160, 178, 437, 493
BplI	GAGNNNNNCTC	2 cut(s)	173, 205
BpuMI	CCSGG	5 cut(s)	117, 136, 160, 178, 493
BsaHI	GRCGYC	2 cut(s)	390, 795
BsaJI	CCNNGG	6 cut(s)	177, 258, 435, 436, 465, 519
BsaWI	WCCGGW	1 cut(s)	446
Bsc4I	CCNNNNNNNGG	6 cut(s)	259, 260, 424, 440, 441, 787
Bse118I	RCCGGY	2 cut(s)	791, 803
Bse1I	ACTGG	1 cut(s)	753
BseBI	CCWGG	1 cut(s)	437
BseDI	CCNNGG	6 cut(s)	177, 258, 435, 436, 465, 519
BseLI	CCNNNNNNNGG	6 cut(s)	259, 260, 424, 440, 441, 787
BseMII	CTCAG	3 cut(s)	260, 650, 813
BseNI	ACTGG	1 cut(s)	753
BseSI	GKGCMC	2 cut(s)	435, 659
BseX3I	CGGCCG	1 cut(s)	789
BseXI	GCAGC	6 cut(s)	111, 157, 313, 458, 572, 858
BseYI	CCCAGC	1 cut(s)	739
BsgI	GTGCAG	2 cut(s)	118, 442
Bsh1236I	CGCG	2 cut(s)	554, 602
Bsh1285I	CGRYCG	1 cut(s)	792
BshFI	GGCC	3 cut(s)	115, 774, 791
BshNI	GGYRCC	1 cut(s)	689
BsiEI	CGRYCG	1 cut(s)	792
BsiHKAI	GWGCWC	2 cut(s)	245, 629
BsiHKCI	CYCGRG	1 cut(s)	295
BsiWI	CGTACG	1 cut(s)	597
BslFI	GGGAC	2 cut(s)	151, 457
BslI	CCNNNNNNNGG	6 cut(s)	259, 260, 424, 440, 441, 787
BsmAI	GTCTC	2 cut(s)	47, 802
BsmBI	CGTCTC	1 cut(s)	802
BsmFI	GGGAC	2 cut(s)	151, 457
BsnI	GGCC	3 cut(s)	115, 774, 791
BsoBI	CYCGRG	1 cut(s)	295
Bsp1286I	GDGCHC	4 cut(s)	245, 435, 629, 659
Bsp143I	GATC	1 cut(s)	571
BspANI	GGCC	3 cut(s)	115, 774, 791
BspCNI	CTCAG	3 cut(s)	259, 649, 812
BspFNI	CGCG	2 cut(s)	554, 602
BspLI	GGNNCC	4 cut(s)	252, 445, 573, 691
BspMAI	CTGCAG	1 cut(s)	590
BspMI	ACCTGC	1 cut(s)	623
BspPI	GGATC	2 cut(s)	566, 579
BspT107I	GGYRCC	1 cut(s)	689
BsrBI	CCGCTC	1 cut(s)	368
BsrFI	RCCGGY	2 cut(s)	791, 803
BsrI	ACTGG	1 cut(s)	753
BssAI	RCCGGY	2 cut(s)	791, 803
BssECI	CCNNGG	6 cut(s)	177, 258, 435, 436, 465, 519
BssMI	GATC	1 cut(s)	571
BssNI	GRCGYC	2 cut(s)	390, 795
BssSI	CACGAG	1 cut(s)	398
Bst2BI	CACGAG	1 cut(s)	398
Bst2UI	CCWGG	1 cut(s)	437
Bst4CI	ACNGT	2 cut(s)	304, 533
BstACI	GRCGYC	2 cut(s)	390, 795
BstC8I	GCNNGC	3 cut(s)	556, 655, 793
BstDEI	CTNAG	3 cut(s)	246, 636, 799
BstDSI	CCRYGG	3 cut(s)	258, 465, 519
BstEII	GGTNACC	1 cut(s)	514
BstFNI	CGCG	2 cut(s)	554, 602
BstHHI	GCGC	3 cut(s)	145, 331, 554
BstKTI	GATC	1 cut(s)	574
BstMAI	GTCTC	2 cut(s)	47, 802
BstMBI	GATC	1 cut(s)	571
BstMCI	CGRYCG	1 cut(s)	792
BstMWI	GCNNNNNNNGC	7 cut(s)	203, 229, 335, 344, 560, 624, 871
BstNI	CCWGG	1 cut(s)	437
BstPI	GGTNACC	1 cut(s)	514
BstSCI	CCNGG	6 cut(s)	115, 134, 158, 176, 435, 491
BstSFI	CTRYAG	1 cut(s)	586
BstSLI	GKGCMC	2 cut(s)	435, 659
BstUI	CGCG	2 cut(s)	554, 602
BstV1I	GCAGC	6 cut(s)	111, 157, 313, 458, 572, 858
BstX2I	RGATCY	1 cut(s)	571
BstXI	CCANNNNNNTGG	1 cut(s)	850
BstYI	RGATCY	1 cut(s)	571
BstZI	CGGCCG	1 cut(s)	789
BsuI	GTATCC	1 cut(s)	401
BsuRI	GGCC	3 cut(s)	115, 774, 791
BtgI	CCRYGG	3 cut(s)	258, 465, 519
BtrI	CACGTC	1 cut(s)	812
BtsI	GCAGTG	1 cut(s)	595
BtsIMutI	CAGTG	3 cut(s)	538, 595, 760
BveI	ACCTGC	1 cut(s)	623
Cac8I	GCNNGC	3 cut(s)	556, 655, 793
CfoI	GCGC	3 cut(s)	145, 331, 554
Cfr10I	RCCGGY	2 cut(s)	791, 803
Cfr13I	GGNCC	3 cut(s)	250, 444, 481
CseI	GACGC	2 cut(s)	463, 784
Csp6I	GTAC	6 cut(s)	29, 300, 580, 598, 631, 667
CviAII	CATG	2 cut(s)	421, 577
CviQI	GTAC	6 cut(s)	29, 300, 580, 598, 631, 667
DdeI	CTNAG	3 cut(s)	246, 636, 799
DpnI	GATC	1 cut(s)	573
DpnII	GATC	1 cut(s)	571
DraI	TTTAAA	1 cut(s)	646
EaeI	YGGCCR	3 cut(s)	113, 772, 789
EagI	CGGCCG	1 cut(s)	789
EciI	GGCGGA	2 cut(s)	247, 362
Ecl136II	GAGCTC	1 cut(s)	627
EclXI	CGGCCG	1 cut(s)	789
Eco24I	GRGCYC	1 cut(s)	629
Eco47I	GGWCC	3 cut(s)	250, 444, 481
Eco52I	CGGCCG	1 cut(s)	789
Eco53kI	GAGCTC	1 cut(s)	627
Eco57I	CTGAAG	1 cut(s)	530
Eco88I	CYCGRG	1 cut(s)	295
Eco91I	GGTNACC	1 cut(s)	514
EcoICRI	GAGCTC	1 cut(s)	627
EcoO109I	RGGNCCY	1 cut(s)	250
EcoO65I	GGTNACC	1 cut(s)	514
EcoRII	CCWGG	1 cut(s)	435
EcoT38I	GRGCYC	1 cut(s)	629
Esp3I	CGTCTC	1 cut(s)	802
FaeI	CATG	2 cut(s)	424, 580
FaiI	YATR	4 cut(s)	226, 422, 578, 681
FaqI	GGGAC	2 cut(s)	151, 457
FatI	CATG	2 cut(s)	420, 576
FauI	CCCGC	2 cut(s)	434, 754
FriOI	GRGCYC	1 cut(s)	629
FspBI	CTAG	1 cut(s)	186
GlaI	GCGC	3 cut(s)	144, 330, 553
GsaI	CCCAGC	1 cut(s)	743
HaeIII	GGCC	3 cut(s)	115, 774, 791
HgaI	GACGC	2 cut(s)	463, 784
HhaI	GCGC	3 cut(s)	145, 331, 554
Hin1I	GRCGYC	2 cut(s)	390, 795
Hin1II	CATG	2 cut(s)	424, 580
Hin6I	GCGC	3 cut(s)	143, 329, 552
HinP1I	GCGC	3 cut(s)	143, 329, 552
HinfI	GANTC	2 cut(s)	182, 235
HphI	GGTGA	1 cut(s)	526
Hpy166II	GTNNAC	5 cut(s)	81, 354, 403, 481, 809
Hpy188I	TCNGA	2 cut(s)	505, 884
Hpy188III	TCNNGA	1 cut(s)	248
Hpy8I	GTNNAC	5 cut(s)	81, 354, 403, 481, 809
Hpy99I	CGWCG	6 cut(s)	79, 392, 479, 505, 689, 816
HpyAV	CCTTC	2 cut(s)	505, 709
HpyCH4III	ACNGT	2 cut(s)	304, 533
HpyCH4IV	ACGT	4 cut(s)	77, 390, 811, 828
HpyCH4V	TGCA	4 cut(s)	99, 459, 588, 618
HpyF10VI	GCNNNNNNNGC	7 cut(s)	203, 229, 335, 344, 560, 624, 871
HpyF3I	CTNAG	3 cut(s)	246, 636, 799
HpySE526I	ACGT	4 cut(s)	77, 390, 811, 828
Hsp92I	GRCGYC	2 cut(s)	390, 795
Hsp92II	CATG	2 cut(s)	424, 580
HspAI	GCGC	3 cut(s)	143, 329, 552
KroI	GCCGGC	1 cut(s)	791
KroNI	GCCGGC	1 cut(s)	793
Kzo9I	GATC	1 cut(s)	571
LmnI	GCTCC	3 cut(s)	323, 365, 505
Lsp1109I	GCAGC	6 cut(s)	111, 157, 313, 458, 572, 858
MaeI	CTAG	1 cut(s)	186
MaeII	ACGT	4 cut(s)	77, 390, 811, 828
MaeIII	GTNAC	4 cut(s)	65, 277, 514, 527
MalI	GATC	1 cut(s)	573
MbiI	CCGCTC	1 cut(s)	368
MboI	GATC	1 cut(s)	571
MflI	RGATCY	1 cut(s)	571
MhlI	GDGCHC	4 cut(s)	245, 435, 629, 659
MlsI	TGGCCA	1 cut(s)	774
MluCI	AATT	1 cut(s)	108
MluNI	TGGCCA	1 cut(s)	774
MlyI	GAGTC	2 cut(s)	191, 229
MmeI	TCCRAC	1 cut(s)	483
MnlI	CCTC	7 cut(s)	342, 407, 425, 443, 494, 553, 734
Mox20I	TGGCCA	1 cut(s)	774
MroNI	GCCGGC	1 cut(s)	791
MscI	TGGCCA	1 cut(s)	774
MseI	TTAA	1 cut(s)	645
MslI	CAYNNNNRTG	1 cut(s)	755
Msp20I	TGGCCA	1 cut(s)	774
MspR9I	CCNGG	6 cut(s)	117, 136, 160, 178, 437, 493
MvaI	CCWGG	1 cut(s)	437
MvnI	CGCG	2 cut(s)	554, 602
MwoI	GCNNNNNNNGC	7 cut(s)	203, 229, 335, 344, 560, 624, 871
NaeI	GCCGGC	1 cut(s)	793
NciI	CCSGG	5 cut(s)	117, 136, 160, 178, 493
NdeII	GATC	1 cut(s)	571
NgoMIV	GCCGGC	1 cut(s)	791
NlaIII	CATG	2 cut(s)	424, 580
NlaIV	GGNNCC	4 cut(s)	252, 445, 573, 691
NmeAIII	GCCGAG	1 cut(s)	50
NmuCI	GTSAC	2 cut(s)	514, 527
OliI	CACNNNNGTG	1 cut(s)	755
PaqCI	CACCTGC	1 cut(s)	623
PasI	CCCWGGG	1 cut(s)	436
PcsI	WCGNNNNNNNCGW	2 cut(s)	396, 681
PdiI	GCCGGC	1 cut(s)	793
Pfl23II	CGTACG	1 cut(s)	597
PfoI	TCCNGGA	1 cut(s)	134
PleI	GAGTC	2 cut(s)	190, 229
PpsI	GAGTC	2 cut(s)	190, 229
PpuMI	RGGWCCY	1 cut(s)	250
Psp124BI	GAGCTC	1 cut(s)	629
Psp5II	RGGWCCY	1 cut(s)	250
Psp6I	CCWGG	1 cut(s)	435
PspEI	GGTNACC	1 cut(s)	514
PspFI	CCCAGC	1 cut(s)	739
PspGI	CCWGG	1 cut(s)	435
PspLI	CGTACG	1 cut(s)	597
PspN4I	GGNNCC	4 cut(s)	252, 445, 573, 691
PspPI	GGNCC	3 cut(s)	250, 444, 481
PspPPI	RGGWCCY	1 cut(s)	250
PsrI	GAACNNNNNNTAC	2 cut(s)	623, 655
PstI	CTGCAG	1 cut(s)	590
PsuI	RGATCY	1 cut(s)	571
RsaI	GTAC	6 cut(s)	30, 301, 581, 599, 632, 668
RsaNI	GTAC	6 cut(s)	29, 300, 580, 598, 631, 667
RseI	CAYNNNNRTG	1 cut(s)	755
SacI	GAGCTC	1 cut(s)	629
SaqAI	TTAA	1 cut(s)	645
Sau3AI	GATC	1 cut(s)	571
Sau96I	GGNCC	3 cut(s)	250, 444, 481
SchI	GAGTC	2 cut(s)	191, 229
ScrFI	CCNGG	6 cut(s)	117, 136, 160, 178, 437, 493
SduI	GDGCHC	4 cut(s)	245, 435, 629, 659
SfcI	CTRYAG	1 cut(s)	586
SinI	GGWCC	3 cut(s)	250, 444, 481
SmiMI	CAYNNNNRTG	1 cut(s)	755
Sse9I	AATT	1 cut(s)	108
SspMI	CTAG	1 cut(s)	186
SstI	GAGCTC	1 cut(s)	629
StyD4I	CCNGG	6 cut(s)	115, 134, 158, 176, 435, 491
TaaI	ACNGT	2 cut(s)	304, 533
TaiI	ACGT	4 cut(s)	80, 393, 814, 831
TaqI	TCGA	4 cut(s)	13, 191, 306, 818
TasI	AATT	1 cut(s)	108
TatI	WGTACW	1 cut(s)	579
TauI	GCSGC	5 cut(s)	713, 716, 791, 857, 877
Tru1I	TTAA	1 cut(s)	645
Tru9I	TTAA	1 cut(s)	645
TscAI	CASTG	3 cut(s)	538, 595, 760
TseFI	GTSAC	2 cut(s)	514, 527
TseI	GCWGC	6 cut(s)	99, 145, 326, 471, 585, 871
Tsp45I	GTSAC	2 cut(s)	514, 527
TspDTI	ATGAA	1 cut(s)	43
TspGWI	ACGGA	3 cut(s)	378, 420, 489
TspRI	CASTG	3 cut(s)	538, 595, 760
VpaK11BI	GGWCC	3 cut(s)	250, 444, 481
XspI	CTAG	1 cut(s)	186
ZraI	GACGTC	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.