Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004312

Physical Location & Seq

Genomic Coordinates Reverse (-)

10702975 .. 10704156

Gene Structure 1182 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0124400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGCGGAGGAGAGGTCGACTGGGGTAGTGAAGTGGTTCAATGACACCAAGGGTTTCGGCTTCATCACCCCTGACAACAACACCGAAGATCTGTTCGTCCACCAATCCTCGATCAAATCCGACGGCTTCCGCACCGTCGCCGAGGGTGACGCCGTTGAGTTTCTGATCGCCGTCGGCGAGGACGGCAAGACCAAGGCCGTCGATGTCACTGGTCCGAACGGCGCGCCTCTGCCGGGGAAGGAGAGTTTTGCTCGCTCCGGCGGCCGTGGCGGTGGCGGTAGAGACGCTGCGGGATTCGGCGGTGCGTGGAGAGGTGGAGATCGCCGTAACGGTGGTGGCGGCGGCGGTGGCGGGTGTTATACTTGCGGCGATACTGGTCACATGGCTAGGGATTGCAATCGCGGTGGGAATGGAGGCGGTGGAGGCCGCGGTGGTGGTGATGGATGCTTTACTTGCGGAGGGTATGGACACATGGCAAGGAATTGTCCTAATGGGAACAGCGGCGGTGGTGGCGGTGGCCGTGGTGGTGAGGGTTGCTACAAGTGTGGCGATTTTGGCCATTTGGCTAGGGACTGTTTCAATGGAGCCTCCGGTGGCGGAGGCGGTGGTGCATGTTATACCTGTGGGGAGGTTGGTCACATGGCAAGGGATTGCACCAGGGGAGGGGGTGGCGGTGGACGCAGTGGCGGTCGGTATGGCTACAGTTCTGGATCTGGTGGCGGCAATGGCTGTTACAACTGTGGGCAGGCTGGGCATTTTGCCAAGGAGTGTCCAAACCAGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009889 GO:0009909 GO:0009911 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAP

Protein Analysis

261

Amino Acids

25.58

Weight (kDa)

7.46

Isoelectric Point (pI)

35.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CSD	PF00313	7 - 71	1.9e-24	'Cold-shock' DNA-binding domain
zf-CCHC	PF00098	118 - 132	2.9e-06	Zinc knuckle
zf-CCHC	PF00098	148 - 164	7.3e-06	Zinc knuckle
zf-CCHC	PF00098	178 - 193	7e-06	Zinc knuckle
zf-CCHC	PF00098	204 - 219	4.3e-08	Zinc knuckle
zf-CCHC	PF00098	243 - 259	1e-07	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66840 AT5G66840
fragaria_vesca	FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670
malus_domestica	MD02G1168400.v1.1
prunus_persica	Prupe.7G136600_v2.0.a1 Prupe.7G136600_v2.0.a1 Prupe.7G136600_v2.0.a1
pyrus_communis	pycom02g13550 pycom15g24350 pycom15g24360
rosa_chinensis	RchiOBHm_Chr2g0104981
rosa_laevigata	RLG00000017385
rosa_multiflora	Rmu_sc0000641.1_g000032
rosa_roxburghii	Rroxscaffold_2G00138610
rosa_rugosa	Rorug02G0124300 Rorug02G0124400 Rorug02G0124500 Rorug02G0124600 Rorug02G0124700 Rorug02G0124800
rosa_samantha	Rh2AG175100 Rh2CG179700 Rh2DG181500
rosa_wichuraiana	Rw2G013760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	17
AccII	CGCG	3 cut(s)	224, 402, 429
AclWI	GGATC	1 cut(s)	718
AcoI	YGGCCR	3 cut(s)	262, 517, 556
AcyI	GRCGYC	1 cut(s)	150
AfiI	CCNNNNNNNGG	2 cut(s)	233, 663
AgsI	TTSAA	2 cut(s)	40, 580
AjnI	CCWGG	2 cut(s)	656, 777
Alw26I	GTCTC	1 cut(s)	276
AlwI	GGATC	1 cut(s)	718
AoxI	GGCC	5 cut(s)	195, 262, 424, 517, 556
ApeKI	GCWGC	1 cut(s)	287
AscI	GGCGCGCC	1 cut(s)	222
Asp700I	GAANNNNTTC	1 cut(s)	35
AspLEI	GCGC	2 cut(s)	224, 226
AspS9I	GGNCC	1 cut(s)	212
AsuC2I	CCSGG	1 cut(s)	234
AsuHPI	GGTGA	4 cut(s)	58, 158, 449, 539
AvaII	GGWCC	1 cut(s)	212
BalI	TGGCCA	1 cut(s)	558
BbvI	GCAGC	1 cut(s)	274
BccI	CCATC	1 cut(s)	434
BceAI	ACGGC	9 cut(s)	137, 139, 155, 182, 199, 235, 249, 309, 504
BciT130I	CCWGG	2 cut(s)	658, 779
BcnI	CCSGG	1 cut(s)	234
BcoDI	GTCTC	1 cut(s)	276
BfaI	CTAG	2 cut(s)	387, 567
BfmI	CTRYAG	1 cut(s)	700
BglII	AGATCT	1 cut(s)	88
BisI	GCNGC	8 cut(s)	262, 288, 340, 343, 367, 427, 502, 721
BlsI	GCNGC	8 cut(s)	263, 289, 341, 344, 368, 428, 503, 722
Bme1390I	CCNGG	3 cut(s)	234, 658, 779
Bme18I	GGWCC	1 cut(s)	212
BmgT120I	GGNCC	1 cut(s)	212
BmiI	GGNNCC	1 cut(s)	586
BmrFI	CCNGG	3 cut(s)	234, 658, 779
BmrI	ACTGGG	1 cut(s)	30
BmsI	GCATC	1 cut(s)	434
BmuI	ACTGGG	1 cut(s)	30
BplI	GAGNNNNNCTC	2 cut(s)	235, 267
BpuMI	CCSGG	1 cut(s)	234
BsaBI	GATNNNNATC	1 cut(s)	396
BsaHI	GRCGYC	1 cut(s)	150
BsaJI	CCNNGG	9 cut(s)	48, 141, 192, 233, 265, 427, 520, 657, 762
BsaWI	WCCGGW	1 cut(s)	590
BsaXI	ACNNNNNCTCC	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	2 cut(s)	233, 663
Bse1I	ACTGG	3 cut(s)	25, 214, 379
Bse3DI	GCAATG	1 cut(s)	730
Bse8I	GATNNNNATC	1 cut(s)	396
BseBI	CCWGG	2 cut(s)	658, 779
BseDI	CCNNGG	9 cut(s)	48, 141, 192, 233, 265, 427, 520, 657, 762
BseGI	GGATG	1 cut(s)	449
BseJI	GATNNNNATC	1 cut(s)	396
BseLI	CCNNNNNNNGG	2 cut(s)	233, 663
BseMI	GCAATG	1 cut(s)	730
BseNI	ACTGG	3 cut(s)	25, 214, 379
BsePI	GCGCGC	1 cut(s)	222
BseRI	GAGGAG	1 cut(s)	23
BseX3I	CGGCCG	1 cut(s)	262
BseXI	GCAGC	1 cut(s)	274
BseYI	CCCAGC	1 cut(s)	749
Bsh1236I	CGCG	3 cut(s)	224, 402, 429
Bsh1285I	CGRYCG	2 cut(s)	265, 691
BshFI	GGCC	5 cut(s)	197, 264, 426, 519, 558
BsiEI	CGRYCG	2 cut(s)	265, 691
BsiSI	CCGG	3 cut(s)	233, 258, 591
BslFI	GGGAC	1 cut(s)	584
BslI	CCNNNNNNNGG	2 cut(s)	233, 663
BsmAI	GTCTC	1 cut(s)	276
BsmBI	CGTCTC	1 cut(s)	276
BsmFI	GGGAC	1 cut(s)	584
BsnI	GGCC	5 cut(s)	197, 264, 426, 519, 558
Bsp143I	GATC	5 cut(s)	88, 111, 165, 319, 710
BspANI	GGCC	5 cut(s)	197, 264, 426, 519, 558
BspFNI	CGCG	3 cut(s)	224, 402, 429
BspLI	GGNNCC	1 cut(s)	586
BspPI	GGATC	1 cut(s)	718
BsrDI	GCAATG	1 cut(s)	730
BsrI	ACTGG	3 cut(s)	25, 214, 379
BssECI	CCNNGG	9 cut(s)	48, 141, 192, 233, 265, 427, 520, 657, 762
BssHII	GCGCGC	1 cut(s)	222
BssMI	GATC	5 cut(s)	88, 111, 165, 319, 710
BssNI	GRCGYC	1 cut(s)	150
BssT1I	CCWWGG	3 cut(s)	48, 192, 762
Bst2UI	CCWGG	2 cut(s)	658, 779
Bst4CI	ACNGT	5 cut(s)	136, 332, 575, 704, 740
BstACI	GRCGYC	1 cut(s)	150
BstC8I	GCNNGC	3 cut(s)	224, 253, 747
BstDSI	CCRYGG	3 cut(s)	265, 427, 520
BstF5I	GGATG	1 cut(s)	449
BstFNI	CGCG	3 cut(s)	224, 402, 429
BstHHI	GCGC	2 cut(s)	224, 226
BstKTI	GATC	5 cut(s)	91, 114, 168, 322, 713
BstMAI	GTCTC	1 cut(s)	276
BstMBI	GATC	5 cut(s)	88, 111, 165, 319, 710
BstMCI	CGRYCG	2 cut(s)	265, 691
BstNI	CCWGG	2 cut(s)	658, 779
BstNSI	RCATGY	1 cut(s)	615
BstSCI	CCNGG	3 cut(s)	232, 656, 777
BstSFI	CTRYAG	1 cut(s)	700
BstUI	CGCG	3 cut(s)	224, 402, 429
BstV1I	GCAGC	1 cut(s)	274
BstX2I	RGATCY	2 cut(s)	88, 710
BstYI	RGATCY	2 cut(s)	88, 710
BstZI	CGGCCG	1 cut(s)	262
BsuRI	GGCC	5 cut(s)	197, 264, 426, 519, 558
BtgI	CCRYGG	3 cut(s)	265, 427, 520
BtsCI	GGATG	1 cut(s)	449
BtsI	GCAGTG	1 cut(s)	688
BtsIMutI	CAGTG	2 cut(s)	207, 688
Cac8I	GCNNGC	3 cut(s)	224, 253, 747
CfoI	GCGC	2 cut(s)	224, 226
Cfr13I	GGNCC	1 cut(s)	212
Cfr42I	CCGCGG	1 cut(s)	430
CseI	GACGC	3 cut(s)	158, 293, 687
CspCI	CAANNNNNGTGG	2 cut(s)	385, 420
CviAII	CATG	4 cut(s)	382, 472, 612, 640
DpnI	GATC	5 cut(s)	90, 113, 167, 321, 712
DpnII	GATC	5 cut(s)	88, 111, 165, 319, 710
EaeI	YGGCCR	3 cut(s)	262, 517, 556
EagI	CGGCCG	1 cut(s)	262
EciI	GGCGGA	2 cut(s)	20, 612
EclXI	CGGCCG	1 cut(s)	262
Eco130I	CCWWGG	3 cut(s)	48, 192, 762
Eco47I	GGWCC	1 cut(s)	212
Eco52I	CGGCCG	1 cut(s)	262
EcoRII	CCWGG	2 cut(s)	656, 777
EcoT14I	CCWWGG	3 cut(s)	48, 192, 762
ErhI	CCWWGG	3 cut(s)	48, 192, 762
Esp3I	CGTCTC	1 cut(s)	276
FaeI	CATG	4 cut(s)	385, 475, 615, 643
FaiI	YATR	8 cut(s)	360, 383, 465, 473, 613, 618, 641, 696
FaqI	GGGAC	1 cut(s)	584
FatI	CATG	4 cut(s)	381, 471, 611, 639
FauI	CCCGC	2 cut(s)	283, 344
FblI	GTMKAC	1 cut(s)	17
Fnu4HI	GCNGC	8 cut(s)	262, 288, 340, 343, 367, 427, 502, 721
FokI	GGATG	1 cut(s)	456
Fsp4HI	GCNGC	8 cut(s)	262, 288, 340, 343, 367, 427, 502, 721
FspBI	CTAG	2 cut(s)	387, 567
GlaI	GCGC	2 cut(s)	223, 225
GluI	GCNGC	8 cut(s)	262, 288, 340, 343, 367, 427, 502, 721
GsaI	CCCAGC	1 cut(s)	753
HaeIII	GGCC	5 cut(s)	197, 264, 426, 519, 558
HapII	CCGG	3 cut(s)	233, 258, 591
HgaI	GACGC	3 cut(s)	158, 293, 687
HhaI	GCGC	2 cut(s)	224, 226
Hin1I	GRCGYC	1 cut(s)	150
Hin1II	CATG	4 cut(s)	385, 475, 615, 643
Hin6I	GCGC	2 cut(s)	222, 224
HinP1I	GCGC	2 cut(s)	222, 224
HincII	GTYRAC	1 cut(s)	18
HindII	GTYRAC	1 cut(s)	18
HinfI	GANTC	1 cut(s)	294
HpaII	CCGG	3 cut(s)	233, 258, 591
HphI	GGTGA	4 cut(s)	58, 158, 449, 539
Hpy166II	GTNNAC	3 cut(s)	18, 100, 677
Hpy188I	TCNGA	3 cut(s)	121, 165, 216
Hpy188III	TCNNGA	1 cut(s)	708
Hpy8I	GTNNAC	3 cut(s)	18, 100, 677
Hpy99I	CGWCG	4 cut(s)	125, 140, 176, 203
HpyAV	CCTTC	1 cut(s)	232
HpyCH4III	ACNGT	5 cut(s)	136, 332, 575, 704, 740
HpyCH4V	TGCA	3 cut(s)	396, 611, 654
Hsp92I	GRCGYC	1 cut(s)	150
Hsp92II	CATG	4 cut(s)	385, 475, 615, 643
HspAI	GCGC	2 cut(s)	222, 224
KspI	CCGCGG	1 cut(s)	430
Kzo9I	GATC	5 cut(s)	88, 111, 165, 319, 710
LmnI	GCTCC	2 cut(s)	260, 584
Lsp1109I	GCAGC	1 cut(s)	274
LweI	GCATC	1 cut(s)	434
MaeI	CTAG	2 cut(s)	387, 567
MaeIII	GTNAC	6 cut(s)	146, 205, 326, 377, 635, 731
MalI	GATC	5 cut(s)	90, 113, 167, 321, 712
MboI	GATC	5 cut(s)	88, 111, 165, 319, 710
MboII	GAAGA	1 cut(s)	98
MflI	RGATCY	2 cut(s)	88, 710
MlsI	TGGCCA	1 cut(s)	558
MluCI	AATT	1 cut(s)	481
MluNI	TGGCCA	1 cut(s)	558
MmeI	TCCRAC	1 cut(s)	144
Mox20I	TGGCCA	1 cut(s)	558
MroXI	GAANNNNTTC	1 cut(s)	35
MscI	TGGCCA	1 cut(s)	558
Msp20I	TGGCCA	1 cut(s)	558
MspA1I	CMGCKG	2 cut(s)	429, 501
MspI	CCGG	3 cut(s)	233, 258, 591
MspR9I	CCNGG	3 cut(s)	234, 658, 779
MvaI	CCWGG	2 cut(s)	658, 779
MvnI	CGCG	3 cut(s)	224, 402, 429
NciI	CCSGG	1 cut(s)	234
NdeII	GATC	5 cut(s)	88, 111, 165, 319, 710
NlaIII	CATG	4 cut(s)	385, 475, 615, 643
NlaIV	GGNNCC	1 cut(s)	586
NmeAIII	GCCGAG	1 cut(s)	166
NmuCI	GTSAC	4 cut(s)	146, 205, 377, 635
NspI	RCATGY	1 cut(s)	615
PalAI	GGCGCGCC	1 cut(s)	222
PauI	GCGCGC	1 cut(s)	222
PcsI	WCGNNNNNNNCGW	1 cut(s)	174
PdmI	GAANNNNTTC	1 cut(s)	35
PfeI	GAWTC	1 cut(s)	294
PkrI	GCNGC	8 cut(s)	263, 289, 341, 344, 368, 428, 503, 722
Psp6I	CCWGG	2 cut(s)	656, 777
PspFI	CCCAGC	1 cut(s)	749
PspGI	CCWGG	2 cut(s)	656, 777
PspN4I	GGNNCC	1 cut(s)	586
PspPI	GGNCC	1 cut(s)	212
PsuI	RGATCY	2 cut(s)	88, 710
PteI	GCGCGC	1 cut(s)	222
SacII	CCGCGG	1 cut(s)	430
SalI	GTCGAC	1 cut(s)	16
SatI	GCNGC	8 cut(s)	262, 288, 340, 343, 367, 427, 502, 721
Sau3AI	GATC	5 cut(s)	88, 111, 165, 319, 710
Sau96I	GGNCC	1 cut(s)	212
ScrFI	CCNGG	3 cut(s)	234, 658, 779
SetI	ASST	4 cut(s)	17, 316, 623, 633
SfaNI	GCATC	1 cut(s)	434
SfcI	CTRYAG	1 cut(s)	700
Sfr303I	CCGCGG	1 cut(s)	430
SgrBI	CCGCGG	1 cut(s)	430
SgsI	GGCGCGCC	1 cut(s)	222
SinI	GGWCC	1 cut(s)	212
Sse9I	AATT	1 cut(s)	481
SspMI	CTAG	2 cut(s)	387, 567
StyD4I	CCNGG	3 cut(s)	232, 656, 777
StyI	CCWWGG	3 cut(s)	48, 192, 762
TaaI	ACNGT	5 cut(s)	136, 332, 575, 704, 740
TaqI	TCGA	3 cut(s)	17, 110, 201
TasI	AATT	1 cut(s)	481
TauI	GCSGC	7 cut(s)	264, 342, 345, 369, 429, 504, 723
TfiI	GAWTC	1 cut(s)	294
TscAI	CASTG	2 cut(s)	214, 688
TseFI	GTSAC	4 cut(s)	146, 205, 377, 635
TseI	GCWGC	1 cut(s)	287
Tsp45I	GTSAC	4 cut(s)	146, 205, 377, 635
TspDTI	ATGAA	1 cut(s)	52
TspRI	CASTG	2 cut(s)	214, 688
VpaK11BI	GGWCC	1 cut(s)	212
XceI	RCATGY	1 cut(s)	615
XmiI	GTMKAC	1 cut(s)	17
XmnI	GAANNNNTTC	1 cut(s)	35
XspI	CTAG	2 cut(s)	387, 567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.