Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0004312

Physical Location & Seq

Genomic Coordinates Forward (+)

8892055 .. 8896151

Gene Structure 4097 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g15670.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGGTTCACCGGTGTTGGATGACATGTCCACCAGAGAAGGCAAGCGCGCCTTTATTTGTATCTCTTCGTCTTCTTCCTCCTCTGACGAAGAAGGCGACGAACCAGTAGAAGACAGCGACGACCATTATTCCGACGAGGATGATCACGACGACGACAATGACGAGCCGAACGAGGATGAGGATCACAGTGATGATGAGTCTCTCTGCAACAAAGTCATGCGTTTCCTCAAAGAAGGGAAGGATTTGGAGTGTTTGAGTCTTAAAGAATGCAAAGCCTATTTGCGGAAGCACGGGCTTAGAATTTCAGGAACCAAATTGATTTGTATCCAAAGAATTGAAGAGCACCAGAGATTAAAAGATGGAAATGGTGAAGCATTGTATCCCAGATCATCCTTTGTGATTAACTGTACAGGTGATGTCTGTAAGGGAGACGTCGTCCTCTTCACTCAGAAAGTTTATCAGAAGTTTGATAAGATGAAGAGACATGGAAGAAGTCTTGGGAAGAGAGTTGTTGCCGGCAGGGTTGTGAAGGAAAGCTATGGTGCGGCTAGACAACAACATACTTTTACGGTTGAAGTGATATGGAGCAGGGGAGTAAAGGAGCTGTCTCCATTATTTCCTCTGCTTGTGAAGGGTCGCAATCTCTACAAAATGAAAACTTTTAGACAGCATTGGAGTAATGAAGCTGAAAGATCCATAGTTCTAGCTGAGAAGCACAGACGAGGTGGAGCAGCAAGACTTGTCAAAGTGATGAAAAAATCAAAGAAAATGACTGCAAATGGAGGTATGAAGTGCCAAAATCAATCCCGATTTTCTAAACCAAATAATATGCGAAAGAGTAAAGAATTGGAAAGGAGGAAGCACGCGAGATCTGCAAGTCATAATGGCTTTTTTCCTCATCGAGCAGCCCCAGTGTCAAAACAGATGAGCTTCCAACAAAATGAAAGGAGTAAATCCTCTCAACATTCTAGTAAGCTTTCCCAGCTTCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009889 GO:0009909 GO:0009911 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAP

Protein Analysis

331

Amino Acids

37.69

Weight (kDa)

9.3

Isoelectric Point (pI)

55.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7699	PF24766	141 - 225	1.4e-40	Domain of unknown function (DUF7699)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66840 AT5G66840
fragaria_vesca	FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670
malus_domestica	MD02G1168400.v1.1
prunus_persica	Prupe.7G136600_v2.0.a1 Prupe.7G136600_v2.0.a1 Prupe.7G136600_v2.0.a1
pyrus_communis	pycom02g13550 pycom15g24350 pycom15g24360
rosa_chinensis	RchiOBHm_Chr2g0104981
rosa_laevigata	RLG00000017385
rosa_multiflora	Rmu_sc0000641.1_g000032
rosa_roxburghii	Rroxscaffold_2G00138610
rosa_rugosa	Rorug02G0124300 Rorug02G0124400 Rorug02G0124500 Rorug02G0124600 Rorug02G0124700 Rorug02G0124800
rosa_samantha	Rh2AG175100 Rh2CG179700 Rh2DG181500
rosa_wichuraiana	Rw2G013760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	435
AccII	CGCG	2 cut(s)	48, 866
AciI	CCGC	2 cut(s)	283, 545
AclWI	GGATC	2 cut(s)	189, 687
AcsI	RAATTY	1 cut(s)	300
AcyI	GRCGYC	1 cut(s)	432
AfaI	GTAC	1 cut(s)	409
AfiI	CCNNNNNNNGG	1 cut(s)	282
AflIII	ACRYGT	1 cut(s)	24
AgeI	ACCGGT	1 cut(s)	10
AgsI	TTSAA	2 cut(s)	338, 575
AluBI	AGCT	7 cut(s)	537, 604, 686, 707, 930, 976, 985
AluI	AGCT	7 cut(s)	537, 604, 686, 707, 930, 976, 985
Alw21I	GWGCWC	1 cut(s)	345
Alw26I	GTCTC	4 cut(s)	204, 423, 475, 612
AlwI	GGATC	2 cut(s)	189, 687
ApeKI	GCWGC	2 cut(s)	731, 905
ApoI	RAATTY	1 cut(s)	300
AsiGI	ACCGGT	1 cut(s)	10
AspLEI	GCGC	2 cut(s)	48, 50
AsuHPI	GGTGA	2 cut(s)	380, 425
BbsI	GAAGAC	2 cut(s)	63, 117
Bbv12I	GWGCWC	1 cut(s)	345
BbvI	GCAGC	2 cut(s)	743, 917
BccI	CCATC	1 cut(s)	353
BciVI	GTATCC	2 cut(s)	335, 390
BclI	TGATCA	1 cut(s)	142
BcoDI	GTCTC	4 cut(s)	204, 423, 475, 612
BfaI	CTAG	3 cut(s)	549, 704, 969
BfuI	GTATCC	2 cut(s)	335, 390
BglII	AGATCT	1 cut(s)	869
BisI	GCNGC	3 cut(s)	546, 732, 906
BlsI	GCNGC	3 cut(s)	547, 733, 907
BmiI	GGNNCC	1 cut(s)	310
BmrI	ACTGGG	1 cut(s)	905
BmuI	ACTGGG	1 cut(s)	905
BpiI	GAAGAC	2 cut(s)	63, 117
BsaBI	GATNNNNATC	2 cut(s)	180, 323
BsaHI	GRCGYC	1 cut(s)	432
BsaWI	WCCGGW	1 cut(s)	10
BsaXI	ACNNNNNCTCC	2 cut(s)	420, 450
Bsc4I	CCNNNNNNNGG	1 cut(s)	282
Bse118I	RCCGGY	2 cut(s)	10, 515
Bse1I	ACTGG	2 cut(s)	104, 911
Bse8I	GATNNNNATC	2 cut(s)	180, 323
BseGI	GGATG	4 cut(s)	25, 145, 181, 389
BseJI	GATNNNNATC	2 cut(s)	180, 323
BseLI	CCNNNNNNNGG	1 cut(s)	282
BseMII	CTCAG	2 cut(s)	461, 699
BseNI	ACTGG	2 cut(s)	104, 911
BsePI	GCGCGC	1 cut(s)	46
BseRI	GAGGAG	1 cut(s)	70
BseXI	GCAGC	2 cut(s)	743, 917
BseYI	CCCAGC	1 cut(s)	981
Bsh1236I	CGCG	2 cut(s)	48, 866
BshTI	ACCGGT	1 cut(s)	10
BsiHKAI	GWGCWC	1 cut(s)	345
BsiSI	CCGG	2 cut(s)	11, 516
BslI	CCNNNNNNNGG	1 cut(s)	282
BsmAI	GTCTC	4 cut(s)	204, 423, 475, 612
BsmBI	CGTCTC	1 cut(s)	423
BsmI	GAATGC	1 cut(s)	272
Bsp1286I	GDGCHC	1 cut(s)	345
Bsp1407I	TGTACA	1 cut(s)	407
Bsp143I	GATC	5 cut(s)	142, 181, 386, 692, 869
BspACI	CCGC	2 cut(s)	283, 545
BspCNI	CTCAG	2 cut(s)	460, 700
BspFNI	CGCG	2 cut(s)	48, 866
BspLI	GGNNCC	1 cut(s)	310
BspPI	GGATC	2 cut(s)	189, 687
BspQI	GCTCTTC	1 cut(s)	333
BsrFI	RCCGGY	2 cut(s)	10, 515
BsrGI	TGTACA	1 cut(s)	407
BsrI	ACTGG	2 cut(s)	104, 911
BssAI	RCCGGY	2 cut(s)	10, 515
BssHII	GCGCGC	1 cut(s)	46
BssMI	GATC	5 cut(s)	142, 181, 386, 692, 869
BssNI	GRCGYC	1 cut(s)	432
Bst4CI	ACNGT	3 cut(s)	188, 407, 571
Bst6I	CTCTTC	5 cut(s)	70, 333, 446, 473, 497
BstACI	GRCGYC	1 cut(s)	432
BstAUI	TGTACA	1 cut(s)	407
BstC8I	GCNNGC	4 cut(s)	44, 48, 517, 864
BstDEI	CTNAG	3 cut(s)	296, 447, 708
BstF5I	GGATG	4 cut(s)	25, 145, 181, 389
BstFNI	CGCG	2 cut(s)	48, 866
BstHHI	GCGC	2 cut(s)	48, 50
BstKTI	GATC	5 cut(s)	145, 184, 389, 695, 872
BstMAI	GTCTC	4 cut(s)	204, 423, 475, 612
BstMBI	GATC	5 cut(s)	142, 181, 386, 692, 869
BstMWI	GCNNNNNNNGC	2 cut(s)	872, 982
BstNSI	RCATGY	1 cut(s)	28
BstUI	CGCG	2 cut(s)	48, 866
BstV1I	GCAGC	2 cut(s)	743, 917
BstV2I	GAAGAC	2 cut(s)	63, 117
BstX2I	RGATCY	2 cut(s)	692, 869
BstYI	RGATCY	2 cut(s)	692, 869
BsuI	GTATCC	2 cut(s)	335, 390
BtsCI	GGATG	4 cut(s)	25, 145, 181, 389
BtsIMutI	CAGTG	2 cut(s)	193, 918
Cac8I	GCNNGC	4 cut(s)	44, 48, 517, 864
CfoI	GCGC	2 cut(s)	48, 50
Cfr10I	RCCGGY	2 cut(s)	10, 515
Csp6I	GTAC	1 cut(s)	408
CspAI	ACCGGT	1 cut(s)	10
CviAII	CATG	3 cut(s)	25, 217, 485
CviQI	GTAC	1 cut(s)	408
DdeI	CTNAG	3 cut(s)	296, 447, 708
DpnI	GATC	5 cut(s)	144, 183, 388, 694, 871
DpnII	GATC	5 cut(s)	142, 181, 386, 692, 869
Eam1104I	CTCTTC	5 cut(s)	70, 333, 446, 473, 497
EarI	CTCTTC	5 cut(s)	70, 333, 446, 473, 497
Esp3I	CGTCTC	1 cut(s)	423
FaeI	CATG	3 cut(s)	28, 220, 488
FalI	AAGNNNNNCTT	2 cut(s)	35, 67
FatI	CATG	3 cut(s)	24, 216, 484
FbaI	TGATCA	1 cut(s)	142
Fnu4HI	GCNGC	3 cut(s)	546, 732, 906
FokI	GGATG	4 cut(s)	32, 152, 188, 376
Fsp4HI	GCNGC	3 cut(s)	546, 732, 906
FspBI	CTAG	3 cut(s)	549, 704, 969
GlaI	GCGC	2 cut(s)	47, 49
GluI	GCNGC	3 cut(s)	546, 732, 906
GsaI	CCCAGC	1 cut(s)	985
HapII	CCGG	2 cut(s)	11, 516
HhaI	GCGC	2 cut(s)	48, 50
Hin1I	GRCGYC	1 cut(s)	432
Hin1II	CATG	3 cut(s)	28, 220, 488
Hin6I	GCGC	2 cut(s)	46, 48
HinP1I	GCGC	2 cut(s)	46, 48
HindIII	AAGCTT	1 cut(s)	974
HinfI	GANTC	2 cut(s)	197, 256
HpaII	CCGG	2 cut(s)	11, 516
HphI	GGTGA	2 cut(s)	380, 425
Hpy166II	GTNNAC	2 cut(s)	8, 30
Hpy188I	TCNGA	4 cut(s)	85, 133, 450, 462
Hpy188III	TCNNGA	3 cut(s)	146, 306, 807
Hpy8I	GTNNAC	2 cut(s)	8, 30
Hpy99I	CGWCG	6 cut(s)	101, 122, 137, 152, 155, 437
HpyAV	CCTTC	6 cut(s)	32, 86, 227, 232, 523, 625
HpyCH4III	ACNGT	3 cut(s)	188, 407, 571
HpyCH4IV	ACGT	1 cut(s)	432
HpyCH4V	TGCA	4 cut(s)	207, 270, 776, 875
HpyF10VI	GCNNNNNNNGC	2 cut(s)	872, 982
HpyF3I	CTNAG	3 cut(s)	296, 447, 708
HpySE526I	ACGT	1 cut(s)	432
Hsp92I	GRCGYC	1 cut(s)	432
Hsp92II	CATG	3 cut(s)	28, 220, 488
HspAI	GCGC	2 cut(s)	46, 48
KroI	GCCGGC	1 cut(s)	515
KroNI	GCCGGC	1 cut(s)	517
Ksp22I	TGATCA	1 cut(s)	142
Kzo9I	GATC	5 cut(s)	142, 181, 386, 692, 869
LguI	GCTCTTC	1 cut(s)	333
LmnI	GCTCC	3 cut(s)	585, 601, 728
Lsp1109I	GCAGC	2 cut(s)	743, 917
MaeI	CTAG	3 cut(s)	549, 704, 969
MaeII	ACGT	1 cut(s)	432
MalI	GATC	5 cut(s)	144, 183, 388, 694, 871
MboI	GATC	5 cut(s)	142, 181, 386, 692, 869
MflI	RGATCY	2 cut(s)	692, 869
MhlI	GDGCHC	1 cut(s)	345
MluCI	AATT	4 cut(s)	300, 314, 333, 845
MlyI	GAGTC	2 cut(s)	206, 265
MmeI	TCCRAC	2 cut(s)	156, 958
MroNI	GCCGGC	1 cut(s)	515
MseI	TTAA	3 cut(s)	261, 353, 402
MslI	CAYNNNNRTG	1 cut(s)	189
MspI	CCGG	2 cut(s)	11, 516
Mva1269I	GAATGC	1 cut(s)	272
MvnI	CGCG	2 cut(s)	48, 866
MwoI	GCNNNNNNNGC	2 cut(s)	872, 982
NaeI	GCCGGC	1 cut(s)	517
NdeII	GATC	5 cut(s)	142, 181, 386, 692, 869
NgoMIV	GCCGGC	1 cut(s)	515
NlaIII	CATG	3 cut(s)	28, 220, 488
NlaIV	GGNNCC	1 cut(s)	310
NspI	RCATGY	1 cut(s)	28
PauI	GCGCGC	1 cut(s)	46
PciI	ACATGT	1 cut(s)	24
PciSI	GCTCTTC	1 cut(s)	333
PcsI	WCGNNNNNNNCGW	3 cut(s)	93, 159, 168
PctI	GAATGC	1 cut(s)	272
PdiI	GCCGGC	1 cut(s)	517
PflFI	GACNNNGTC	1 cut(s)	434
PinAI	ACCGGT	1 cut(s)	10
PkrI	GCNGC	3 cut(s)	547, 733, 907
PleI	GAGTC	2 cut(s)	205, 264
PpsI	GAGTC	2 cut(s)	205, 264
PscI	ACATGT	1 cut(s)	24
PspFI	CCCAGC	1 cut(s)	981
PspN4I	GGNNCC	1 cut(s)	310
PsuI	RGATCY	2 cut(s)	692, 869
PsyI	GACNNNGTC	1 cut(s)	434
PteI	GCGCGC	1 cut(s)	46
RsaI	GTAC	1 cut(s)	409
RsaNI	GTAC	1 cut(s)	408
RseI	CAYNNNNRTG	1 cut(s)	189
SapI	GCTCTTC	1 cut(s)	333
SaqAI	TTAA	3 cut(s)	261, 353, 402
SatI	GCNGC	3 cut(s)	546, 732, 906
Sau3AI	GATC	5 cut(s)	142, 181, 386, 692, 869
SchI	GAGTC	2 cut(s)	206, 265
SduI	GDGCHC	1 cut(s)	345
SgrAI	CRCCGGYG	1 cut(s)	10
SmiMI	CAYNNNNRTG	1 cut(s)	189
Sse9I	AATT	4 cut(s)	300, 314, 333, 845
SsiI	CCGC	2 cut(s)	283, 545
SspMI	CTAG	3 cut(s)	549, 704, 969
TaaI	ACNGT	3 cut(s)	188, 407, 571
TaiI	ACGT	1 cut(s)	435
TaqI	TCGA	1 cut(s)	901
TasI	AATT	4 cut(s)	300, 314, 333, 845
TatI	WGTACW	1 cut(s)	407
TauI	GCSGC	1 cut(s)	548
Tru1I	TTAA	3 cut(s)	261, 353, 402
Tru9I	TTAA	3 cut(s)	261, 353, 402
TscAI	CASTG	2 cut(s)	193, 918
TseI	GCWGC	2 cut(s)	731, 905
TspDTI	ATGAA	6 cut(s)	491, 668, 696, 767, 803, 957
TspRI	CASTG	2 cut(s)	193, 918
Tth111I	GACNNNGTC	1 cut(s)	434
XapI	RAATTY	1 cut(s)	300
XceI	RCATGY	1 cut(s)	28
XspI	CTAG	3 cut(s)	549, 704, 969
ZraI	GACGTC	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.