Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0004312

Physical Location & Seq

Genomic Coordinates Forward (+)

14452161 .. 14456054

Gene Structure 3894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1168400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1422 bp

ATGGAAATGGCAGGGAGGGAAGGTAAGCGCGCTTTTATTTGTATCTCTTCGTCTTCCGAAGAAGAAGACGACGACGGAAAGGAAGACGGCGACTTTGGAGAAGAAGAAGATGACGACGATGAAGGCGGTGACGGTGACGACGGCGATTATGATGATGAGGACGACGATGAAGACGGTGACGGTGATGACGGCGATTATGATGATGAGGACGACGACGACGACGACGACGACGGCGATGAGAAAATTGAGGAGGGCGATGACGAGGCTCTCTGCAACAGCGTAATCCGCTCTCTCCAAGAAGGGATTGATTTGGTTTCTTTAAATCTCAAAGAGTGCAAGGCGTATTTGCGGAGGCACGGCCTCAGAATCTCCGGAACCAAAGCGGTTTGTATTCAGAGAATTGAAGAGCATTGGAGGTTGAAGGATGGAAATGGGGAAGCACTGTATCCGAGATCATCCTTCGTAATTAATTGTACAGGTGATGTCTGTAAGGGAGATGTTGTGCTCTTCACCCAGAAAGTTTATGAGAAGTTTGACAAAGTGACAAGGCATGGAAGGGTTCTAGGGAAGAGAACTGTTGCTGGCAGGGTTGTTAAAGAAAGCTATGGTGCAGCCAAACAGCAACATACTTTTACGGTTGAAGTGATATGGAGCAGGGGAATAAAGAAGCTGTGTCCACTATTTCCTTTGCTTGTGAAGGGTCGTAATCTCTACAAATTGAGAACATTTAGACAGCGTTGGAGTAATGAAGCTGAAAGATCAAAAGTGCTTGCTGAGAAGCACCGACGAGGTGAAGCAGCAAGGCATGTTAGAGCGATTAAAAAATCAAGGAAATGGACTGAAAATGGAGGTGGGAAGCGTCGGAAACAATCGCATTCTACCAGACCAAATCAAATTAGAAAGAATAATGAATCAGAAAAGGGGAAGCATTTTGATAGACTCCAAAGACGGACATCCCGTGGATCTACAAAGCATAATAGTTTCTCTCAACATCAAGCAGCCCTACCATCAAAACAGATGAGGAGTAAAGCCTCTCAACCTTTTAGGAGGCATCAGAAATCAGCACGCCCAAATATTGATAGAGTCCCCGCTCTTCATTCTCAGTCTGTCCCTCGCATTCCTCACCAATCTCAACTGGAATTTCAACACAGGAGTGCACCTTTCCAGTCTTTCGGTCATGTCATGGGCTCCACTTCAACCATGTTGAGATATCCTGTGACAACTAATTTTGATACATTTATTGTACCTGACTCACAATTTCATAGGCTCAATAACAGCAATTGTAGCCACCATGGTTACATAGATCCTGGACACAATATCCCGAATCGGAATCACTTATCTGGCGTGAATGTCGGCAGGCCATTTCAGCCGTATATTTCAGGAGCTGAGACATATGGGGAATGGAGGACAGGGCACAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009889 GO:0009909 GO:0009911 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAP

Protein Analysis

474

Amino Acids

53.9

Weight (kDa)

6.61

Isoelectric Point (pI)

54.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAP	PF02037	103 - 139	3.1e-10	SAP domain
DUF7699	PF24766	163 - 247	1.3e-40	Domain of unknown function (DUF7699)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66840 AT5G66840
fragaria_vesca	FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670
malus_domestica	MD02G1168400.v1.1
prunus_persica	Prupe.7G136600_v2.0.a1 Prupe.7G136600_v2.0.a1 Prupe.7G136600_v2.0.a1
pyrus_communis	pycom02g13550 pycom15g24350 pycom15g24360
rosa_chinensis	RchiOBHm_Chr2g0104981
rosa_laevigata	RLG00000017385
rosa_multiflora	Rmu_sc0000641.1_g000032
rosa_roxburghii	Rroxscaffold_2G00138610
rosa_rugosa	Rorug02G0124300 Rorug02G0124400 Rorug02G0124500 Rorug02G0124600 Rorug02G0124700 Rorug02G0124800
rosa_samantha	Rh2AG175100 Rh2CG179700 Rh2DG181500
rosa_wichuraiana	Rw2G013760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	288, 1091
AccII	CGCG	1 cut(s)	30
AccIII	TCCGGA	1 cut(s)	371
AciI	CCGC	5 cut(s)	126, 286, 349, 383, 1089
AclWI	GGATC	2 cut(s)	970, 1298
AcsI	RAATTY	1 cut(s)	1139
AfaI	GTAC	2 cut(s)	475, 1245
AgsI	TTSAA	5 cut(s)	404, 421, 641, 1145, 1197
AjnI	CCWGG	1 cut(s)	1306
AleI	CACNNNNGTG	1 cut(s)	1152
AluBI	AGCT	4 cut(s)	603, 670, 752, 1385
AluI	AGCT	4 cut(s)	603, 670, 752, 1385
Alw21I	GWGCWC	2 cut(s)	507, 1159
Alw26I	GTCTC	1 cut(s)	1382
Alw44I	GTGCAC	1 cut(s)	1155
AlwI	GGATC	2 cut(s)	970, 1298
AlwNI	CAGNNNCTG	1 cut(s)	1385
Aor13HI	TCCGGA	1 cut(s)	371
AoxI	GGCC	2 cut(s)	358, 1358
ApaLI	GTGCAC	1 cut(s)	1155
ApeKI	GCWGC	3 cut(s)	611, 797, 998
ApoI	RAATTY	1 cut(s)	1139
ArsI	GACNNNNNNTTYG	2 cut(s)	77, 109
AseI	ATTAAT	1 cut(s)	468
AspLEI	GCGC	2 cut(s)	30, 32
AsuHPI	GGTGA	8 cut(s)	140, 146, 188, 194, 491, 502, 803, 1115
BaeGI	GKGCMC	2 cut(s)	1159, 1416
BanII	GRGCYC	1 cut(s)	1190
BbsI	GAAGAC	4 cut(s)	45, 72, 90, 177
Bbv12I	GWGCWC	2 cut(s)	507, 1159
BbvI	GCAGC	3 cut(s)	623, 809, 1010
BccI	CCATC	2 cut(s)	419, 1015
BceAI	ACGGC	6 cut(s)	103, 157, 205, 247, 373, 1354
BciT130I	CCWGG	1 cut(s)	1308
BciVI	GTATCC	1 cut(s)	456
BcoDI	GTCTC	1 cut(s)	1382
BfaI	CTAG	1 cut(s)	563
BfuI	GTATCC	1 cut(s)	456
BisI	GCNGC	3 cut(s)	612, 798, 999
BlsI	GCNGC	3 cut(s)	613, 799, 1000
Bme1390I	CCNGG	1 cut(s)	1308
BmiI	GGNNCC	2 cut(s)	376, 1189
BmrFI	CCNGG	1 cut(s)	1308
BmsI	GCATC	1 cut(s)	1060
BpiI	GAAGAC	4 cut(s)	45, 72, 90, 177
BsaJI	CCNNGG	2 cut(s)	958, 1291
BsaWI	WCCGGW	1 cut(s)	371
BsaXI	ACNNNNNCTCC	4 cut(s)	7, 37, 486, 516
Bse1I	ACTGG	2 cut(s)	1140, 1165
BseAI	TCCGGA	1 cut(s)	371
BseBI	CCWGG	1 cut(s)	1308
BseDI	CCNNGG	2 cut(s)	958, 1291
BseGI	GGATG	3 cut(s)	430, 455, 953
BseMII	CTCAG	4 cut(s)	376, 765, 1115, 1377
BseNI	ACTGG	2 cut(s)	1140, 1165
BsePI	GCGCGC	1 cut(s)	28
BseRI	GAGGAG	2 cut(s)	263, 1036
BseSI	GKGCMC	2 cut(s)	1159, 1416
BseXI	GCAGC	3 cut(s)	623, 809, 1010
BsgI	GTGCAG	1 cut(s)	630
Bsh1236I	CGCG	1 cut(s)	30
BshFI	GGCC	2 cut(s)	360, 1360
BsiHKAI	GWGCWC	2 cut(s)	507, 1159
BsiSI	CCGG	1 cut(s)	372
BslFI	GGGAC	2 cut(s)	1070, 1094
BsmAI	GTCTC	1 cut(s)	1382
BsmFI	GGGAC	2 cut(s)	1070, 1094
BsmI	GAATGC	2 cut(s)	874, 1116
BsnI	GGCC	2 cut(s)	360, 1360
Bsp1286I	GDGCHC	4 cut(s)	507, 1159, 1190, 1416
Bsp13I	TCCGGA	1 cut(s)	371
Bsp1407I	TGTACA	1 cut(s)	473
Bsp143I	GATC	4 cut(s)	452, 758, 962, 1303
Bsp19I	CCATGG	1 cut(s)	1291
BspACI	CCGC	5 cut(s)	126, 286, 349, 383, 1089
BspANI	GGCC	2 cut(s)	360, 1360
BspCNI	CTCAG	4 cut(s)	375, 766, 1114, 1378
BspEI	TCCGGA	1 cut(s)	371
BspFNI	CGCG	1 cut(s)	30
BspLI	GGNNCC	2 cut(s)	376, 1189
BspPI	GGATC	2 cut(s)	970, 1298
BspQI	GCTCTTC	3 cut(s)	399, 512, 1098
BsrBI	CCGCTC	2 cut(s)	288, 1091
BsrGI	TGTACA	1 cut(s)	473
BsrI	ACTGG	2 cut(s)	1140, 1165
BssECI	CCNNGG	2 cut(s)	958, 1291
BssHII	GCGCGC	1 cut(s)	28
BssMI	GATC	4 cut(s)	452, 758, 962, 1303
BssT1I	CCWWGG	1 cut(s)	1291
Bst2UI	CCWGG	1 cut(s)	1308
Bst4CI	ACNGT	6 cut(s)	134, 176, 182, 444, 577, 637
Bst6I	CTCTTC	5 cut(s)	52, 399, 512, 563, 1098
BstAUI	TGTACA	1 cut(s)	473
BstC8I	GCNNGC	5 cut(s)	30, 583, 771, 1066, 1358
BstDEI	CTNAG	4 cut(s)	362, 774, 1101, 1386
BstDSI	CCRYGG	2 cut(s)	958, 1291
BstF5I	GGATG	3 cut(s)	430, 455, 953
BstFNI	CGCG	1 cut(s)	30
BstHHI	GCGC	2 cut(s)	30, 32
BstKTI	GATC	4 cut(s)	455, 761, 965, 1306
BstMAI	GTCTC	1 cut(s)	1382
BstMBI	GATC	4 cut(s)	452, 758, 962, 1303
BstMWI	GCNNNNNNNGC	3 cut(s)	285, 1284, 1366
BstNI	CCWGG	1 cut(s)	1308
BstNSI	RCATGY	1 cut(s)	809
BstSCI	CCNGG	1 cut(s)	1306
BstSLI	GKGCMC	2 cut(s)	1159, 1416
BstUI	CGCG	1 cut(s)	30
BstV1I	GCAGC	3 cut(s)	623, 809, 1010
BstV2I	GAAGAC	4 cut(s)	45, 72, 90, 177
BstX2I	RGATCY	2 cut(s)	962, 1303
BstYI	RGATCY	2 cut(s)	962, 1303
BsuI	GTATCC	1 cut(s)	456
BsuRI	GGCC	2 cut(s)	360, 1360
BtgI	CCRYGG	2 cut(s)	958, 1291
BtgZI	GCGATG	2 cut(s)	249, 270
BtsCI	GGATG	3 cut(s)	430, 455, 953
BtsIMutI	CAGTG	1 cut(s)	440
Cac8I	GCNNGC	5 cut(s)	30, 583, 771, 1066, 1358
CaiI	CAGNNNCTG	1 cut(s)	1385
CfoI	GCGC	2 cut(s)	30, 32
CseI	GACGC	1 cut(s)	848
Csp6I	GTAC	2 cut(s)	474, 1244
CviAII	CATG	6 cut(s)	551, 806, 1178, 1183, 1201, 1292
CviQI	GTAC	2 cut(s)	474, 1244
DdeI	CTNAG	4 cut(s)	362, 774, 1101, 1386
DpnI	GATC	4 cut(s)	454, 760, 964, 1305
DpnII	GATC	4 cut(s)	452, 758, 962, 1303
DraI	TTTAAA	1 cut(s)	321
Eam1104I	CTCTTC	5 cut(s)	52, 399, 512, 563, 1098
EarI	CTCTTC	5 cut(s)	52, 399, 512, 563, 1098
Eco130I	CCWWGG	1 cut(s)	1291
Eco24I	GRGCYC	1 cut(s)	1190
Eco32I	GATATC	1 cut(s)	1211
EcoRII	CCWGG	1 cut(s)	1306
EcoRV	GATATC	1 cut(s)	1211
EcoT14I	CCWWGG	1 cut(s)	1291
EcoT38I	GRGCYC	1 cut(s)	1190
ErhI	CCWWGG	1 cut(s)	1291
FaeI	CATG	6 cut(s)	554, 809, 1181, 1186, 1204, 1295
FaqI	GGGAC	2 cut(s)	1070, 1094
FatI	CATG	6 cut(s)	550, 805, 1177, 1182, 1200, 1291
FauI	CCCGC	1 cut(s)	1096
FauNDI	CATATG	1 cut(s)	1393
Fnu4HI	GCNGC	3 cut(s)	612, 798, 999
FokI	GGATG	3 cut(s)	437, 442, 940
FriOI	GRGCYC	1 cut(s)	1190
Fsp4HI	GCNGC	3 cut(s)	612, 798, 999
FspBI	CTAG	1 cut(s)	563
GlaI	GCGC	2 cut(s)	29, 31
GluI	GCNGC	3 cut(s)	612, 798, 999
HaeIII	GGCC	2 cut(s)	360, 1360
HapII	CCGG	1 cut(s)	372
HgaI	GACGC	1 cut(s)	848
HhaI	GCGC	2 cut(s)	30, 32
Hin1II	CATG	6 cut(s)	554, 809, 1181, 1186, 1204, 1295
Hin6I	GCGC	2 cut(s)	28, 30
HinP1I	GCGC	2 cut(s)	28, 30
HinfI	GANTC	7 cut(s)	366, 911, 939, 1083, 1250, 1324, 1330
HpaII	CCGG	1 cut(s)	372
HphI	GGTGA	8 cut(s)	140, 146, 188, 194, 491, 502, 803, 1115
Hpy166II	GTNNAC	2 cut(s)	677, 1157
Hpy188I	TCNGA	8 cut(s)	58, 365, 396, 450, 864, 916, 1056, 1329
Hpy188III	TCNNGA	3 cut(s)	372, 1321, 1380
Hpy8I	GTNNAC	2 cut(s)	677, 1157
HpyAV	CCTTC	7 cut(s)	14, 116, 293, 415, 469, 549, 691
HpyCH4III	ACNGT	6 cut(s)	134, 176, 182, 444, 577, 637
HpyCH4V	TGCA	4 cut(s)	273, 336, 611, 1157
HpyF10VI	GCNNNNNNNGC	3 cut(s)	285, 1284, 1366
HpyF3I	CTNAG	4 cut(s)	362, 774, 1101, 1386
Hsp92II	CATG	6 cut(s)	554, 809, 1181, 1186, 1204, 1295
HspAI	GCGC	2 cut(s)	28, 30
Kpn2I	TCCGGA	1 cut(s)	371
Kzo9I	GATC	4 cut(s)	452, 758, 962, 1303
LguI	GCTCTTC	3 cut(s)	399, 512, 1098
LmnI	GCTCC	3 cut(s)	651, 1193, 1382
Lsp1109I	GCAGC	3 cut(s)	623, 809, 1010
LweI	GCATC	1 cut(s)	1060
MaeI	CTAG	1 cut(s)	563
MaeIII	GTNAC	6 cut(s)	128, 134, 176, 541, 1216, 1295
MalI	GATC	4 cut(s)	454, 760, 964, 1305
MbiI	CCGCTC	2 cut(s)	288, 1091
MboI	GATC	4 cut(s)	452, 758, 962, 1303
MfeI	CAATTG	1 cut(s)	1279
MflI	RGATCY	2 cut(s)	962, 1303
MhlI	GDGCHC	4 cut(s)	507, 1159, 1190, 1416
MlyI	GAGTC	3 cut(s)	933, 1092, 1244
MmeI	TCCRAC	2 cut(s)	719, 842
MroI	TCCGGA	1 cut(s)	371
MseI	TTAA	4 cut(s)	320, 468, 594, 819
MslI	CAYNNNNRTG	1 cut(s)	1152
MspI	CCGG	1 cut(s)	372
MspR9I	CCNGG	1 cut(s)	1308
MunI	CAATTG	1 cut(s)	1279
Mva1269I	GAATGC	2 cut(s)	874, 1116
MvaI	CCWGG	1 cut(s)	1308
MvnI	CGCG	1 cut(s)	30
MwoI	GCNNNNNNNGC	3 cut(s)	285, 1284, 1366
NcoI	CCATGG	1 cut(s)	1291
NdeI	CATATG	1 cut(s)	1393
NdeII	GATC	4 cut(s)	452, 758, 962, 1303
NlaIII	CATG	6 cut(s)	554, 809, 1181, 1186, 1204, 1295
NlaIV	GGNNCC	2 cut(s)	376, 1189
NmuCI	GTSAC	5 cut(s)	128, 134, 176, 541, 1216
NspI	RCATGY	1 cut(s)	809
OliI	CACNNNNGTG	1 cut(s)	1152
PauI	GCGCGC	1 cut(s)	28
PciSI	GCTCTTC	3 cut(s)	399, 512, 1098
PcsI	WCGNNNNNNNCGW	6 cut(s)	216, 219, 222, 225, 231, 955
PctI	GAATGC	2 cut(s)	874, 1116
PfeI	GAWTC	4 cut(s)	366, 911, 1324, 1330
PfoI	TCCNGGA	1 cut(s)	1306
PkrI	GCNGC	3 cut(s)	613, 799, 1000
PleI	GAGTC	3 cut(s)	933, 1091, 1244
PpsI	GAGTC	3 cut(s)	933, 1091, 1244
PshBI	ATTAAT	1 cut(s)	468
Psp6I	CCWGG	1 cut(s)	1306
PspGI	CCWGG	1 cut(s)	1306
PspN4I	GGNNCC	2 cut(s)	376, 1189
PstNI	CAGNNNCTG	1 cut(s)	1385
PsuI	RGATCY	2 cut(s)	962, 1303
PteI	GCGCGC	1 cut(s)	28
RsaI	GTAC	2 cut(s)	475, 1245
RsaNI	GTAC	2 cut(s)	474, 1244
RseI	CAYNNNNRTG	1 cut(s)	1152
SapI	GCTCTTC	3 cut(s)	399, 512, 1098
SaqAI	TTAA	4 cut(s)	320, 468, 594, 819
SatI	GCNGC	3 cut(s)	612, 798, 999
Sau3AI	GATC	4 cut(s)	452, 758, 962, 1303
SchI	GAGTC	3 cut(s)	933, 1092, 1244
ScrFI	CCNGG	1 cut(s)	1308
SduI	GDGCHC	4 cut(s)	507, 1159, 1190, 1416
SfaNI	GCATC	1 cut(s)	1060
SmiMI	CAYNNNNRTG	1 cut(s)	1152
SsiI	CCGC	5 cut(s)	126, 286, 349, 383, 1089
SspI	AATATT	1 cut(s)	1075
SspMI	CTAG	1 cut(s)	563
StyD4I	CCNGG	1 cut(s)	1306
StyI	CCWWGG	1 cut(s)	1291
TaaI	ACNGT	6 cut(s)	134, 176, 182, 444, 577, 637
TaqII	GACCGA	1 cut(s)	1163
TatI	WGTACW	1 cut(s)	473
TfiI	GAWTC	4 cut(s)	366, 911, 1324, 1330
Tru1I	TTAA	4 cut(s)	320, 468, 594, 819
Tru9I	TTAA	4 cut(s)	320, 468, 594, 819
TscAI	CASTG	1 cut(s)	447
TseFI	GTSAC	5 cut(s)	128, 134, 176, 541, 1216
TseI	GCWGC	3 cut(s)	611, 797, 998
Tsp45I	GTSAC	5 cut(s)	128, 134, 176, 541, 1216
TspDTI	ATGAA	6 cut(s)	135, 183, 762, 924, 1085, 1250
TspGWI	ACGGA	2 cut(s)	90, 964
TspRI	CASTG	1 cut(s)	447
VneI	GTGCAC	1 cut(s)	1155
VspI	ATTAAT	1 cut(s)	468
XapI	RAATTY	1 cut(s)	1139
XceI	RCATGY	1 cut(s)	809
XspI	CTAG	1 cut(s)	563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.