Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004312

Physical Location & Seq

Genomic Coordinates Reverse (-)

76776410 .. 76779548

Gene Structure 3139 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00138610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGGCCGCGAGGGAAGGTAAGCCCGCCTTTATTTGTATCTCTTCCTCTGAAGAAGACGACGACGGACCAGACAGCGACGACTATGATTACAATGATAATCACGACGACGACGAGGACGACCAAAAGGAGGAAGAGGTCGATGACGAGTCTCTCTCCAACAAAGTCATACGCTTCCTCAATGAAGGGAGTGATTTAGATTCTTTGAATCTCAAAGAATGCAAAGCCTATTTGCGAAAGCACGGTCTTAGAATTTCAGGAACCAAATTGATTTGTATACAAAGAATTCAAGAGCACCAGAGATTAAAAGATGGAAATGGTGAAGCATTGTATCCCAGATCATCCTTTGTGATTAACTGTACAGGTGACGTCTGTAAGGGAGATGTCGTCCTCTTCACTCAGAAAGTTCATCAGAAGTTTGATAAGATGACAAGGCATGGAAGGGTTCTCGGGAAGAGAGTTGTTGCCGGTAGGGTTGTCAAAGAAAGCTATGGTGCAGCTAGACAACAGCATACTTTTACGGTTGAAGTGTTATGGAGTAGGGGAATAAAGGAGCTGTGTCCGCTATTTCCTCTACTTGTGAAGGGTCGCAATCTCTACAAAATGAAAACTTTTAGACAGCGTTGGAGTAATGAAGCTGAAAGATCCACAGTGCTAGCTGAGAAGCACAGACGAGGTGGAGCAGCAAGACTTGTGAGAGCGATGAAAAAATCAAAGAAATCGACTGCCAATGGAGGTATGAAGTGTCACAACCAATCCCAATTTTCTAAACCAAACAACAAGCGAAAGACTACAGAATCAGAAAGGGGGAAGCACGCGAGATCTGCAAGAGCAGCACCTTCAGAACAGATGAGTTCCCAACAAAATGCAAGGAGTAAAACCTCTCAACGTTCTAGTAAGCGCCATAAAGCAGTTCACCCTAATATAGATAGAGTTCCAACTCTCCAGTCACAGTCTAATCCTCGAATTTGTCACCCATCTCAAATAGAATCTCAACACAGGAATGCTCCTTTCCCATATGCTAGTCATCCCATAGGCTCCTCTTCAACCATGTTGAGATATCCTACAGCAACTGGTGCTACTACATTTGTTTTACCTGCATCACAGTTTCCCAGCTTCACTGACAGAAATTATAGCCACTATGGCTACATAGATCCTGTCTATAATTGGGAGTTGAACAACCGGAATCAATTATCAGGATCGGATGCTGGCAGGCCATTTCATCTCTATATGTCAGCAGCTGGGAACTATGGACATAGGGGGAGAGGGCAAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009889 GO:0009909 GO:0009911 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAP

Protein Analysis

424

Amino Acids

48.0

Weight (kDa)

9.63

Isoelectric Point (pI)

58.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAP	PF02037	64 - 99	8.2e-07	SAP domain
DUF7699	PF24766	124 - 208	6.4e-40	Domain of unknown function (DUF7699)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66840 AT5G66840
fragaria_vesca	FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670
malus_domestica	MD02G1168400.v1.1
prunus_persica	Prupe.7G136600_v2.0.a1 Prupe.7G136600_v2.0.a1 Prupe.7G136600_v2.0.a1
pyrus_communis	pycom02g13550 pycom15g24350 pycom15g24360
rosa_chinensis	RchiOBHm_Chr2g0104981
rosa_laevigata	RLG00000017385
rosa_multiflora	Rmu_sc0000641.1_g000032
rosa_roxburghii	Rroxscaffold_2G00138610
rosa_rugosa	Rorug02G0124300 Rorug02G0124400 Rorug02G0124500 Rorug02G0124600 Rorug02G0124700 Rorug02G0124800
rosa_samantha	Rh2AG175100 Rh2CG179700 Rh2DG181500
rosa_wichuraiana	Rw2G013760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	369
Acc36I	ACCTGC	1 cut(s)	1102
AccI	GTMKAC	1 cut(s)	274
AccII	CGCG	2 cut(s)	8, 815
AciI	CCGC	3 cut(s)	6, 24, 560
AclI	AACGTT	1 cut(s)	886
AclWI	GGATC	3 cut(s)	636, 1145, 1204
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	3 cut(s)	249, 282, 963
AcuI	CTGAAG	2 cut(s)	69, 822
AcyI	GRCGYC	1 cut(s)	366
AfaI	GTAC	1 cut(s)	358
AfiI	CCNNNNNNNGG	1 cut(s)	127
AgsI	TTSAA	5 cut(s)	205, 287, 524, 1044, 1174
AluBI	AGCT	7 cut(s)	486, 497, 553, 635, 656, 1113, 1238
AluI	AGCT	7 cut(s)	486, 497, 553, 635, 656, 1113, 1238
Alw21I	GWGCWC	1 cut(s)	294
Alw26I	GTCTC	1 cut(s)	153
AlwI	GGATC	3 cut(s)	636, 1145, 1204
AlwNI	CAGNNNCTG	2 cut(s)	1070, 1238
Ama87I	CYCGRG	1 cut(s)	446
AoxI	GGCC	2 cut(s)	3, 1211
ApeKI	GCWGC	4 cut(s)	494, 680, 830, 1235
ApoI	RAATTY	3 cut(s)	249, 282, 963
ArsI	GACNNNNNNTTYG	2 cut(s)	226, 258
AspLEI	GCGC	1 cut(s)	900
AspS9I	GGNCC	1 cut(s)	65
AsuHPI	GGTGA	4 cut(s)	329, 374, 905, 962
AsuNHI	GCTAGC	1 cut(s)	652
AvaI	CYCGRG	1 cut(s)	446
AvaII	GGWCC	1 cut(s)	65
BbsI	GAAGAC	1 cut(s)	60
Bbv12I	GWGCWC	1 cut(s)	294
BbvI	GCAGC	4 cut(s)	506, 692, 842, 1247
BccI	CCATC	2 cut(s)	302, 982
BciVI	GTATCC	1 cut(s)	339
BcoDI	GTCTC	1 cut(s)	153
BfaI	CTAG	4 cut(s)	498, 653, 891, 1020
BfmI	CTRYAG	2 cut(s)	789, 1062
BfoI	RGCGCY	1 cut(s)	901
BfuAI	ACCTGC	1 cut(s)	1102
BfuI	GTATCC	1 cut(s)	339
BglI	GCCNNNNNGGC	1 cut(s)	1140
BglII	AGATCT	1 cut(s)	818
BisI	GCNGC	5 cut(s)	6, 495, 681, 831, 1236
BlsI	GCNGC	5 cut(s)	7, 496, 682, 832, 1237
Bme18I	GGWCC	1 cut(s)	65
BmeT110I	CYCGRG	1 cut(s)	446
BmgT120I	GGNCC	1 cut(s)	65
BmiI	GGNNCC	2 cut(s)	259, 1036
BmsI	GCATC	2 cut(s)	1106, 1192
BmtI	GCTAGC	1 cut(s)	656
BpiI	GAAGAC	1 cut(s)	60
BplI	GAGNNNNNCTC	2 cut(s)	137, 169
BpmI	CTGGAG	1 cut(s)	926
BsaHI	GRCGYC	1 cut(s)	366
BsaWI	WCCGGW	1 cut(s)	1179
BsaXI	ACNNNNNCTCC	2 cut(s)	369, 399
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
Bse118I	RCCGGY	1 cut(s)	464
Bse1I	ACTGG	2 cut(s)	943, 1075
BseGI	GGATG	3 cut(s)	338, 1024, 1207
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseMII	CTCAG	2 cut(s)	410, 648
BseNI	ACTGG	2 cut(s)	943, 1075
BseRI	GAGGAG	1 cut(s)	1027
BseXI	GCAGC	4 cut(s)	506, 692, 842, 1247
BseYI	CCCAGC	2 cut(s)	1109, 1238
BsgI	GTGCAG	1 cut(s)	513
Bsh1236I	CGCG	2 cut(s)	8, 815
BshFI	GGCC	2 cut(s)	5, 1213
BsiHKAI	GWGCWC	1 cut(s)	294
BsiHKCI	CYCGRG	1 cut(s)	446
BsiSI	CCGG	2 cut(s)	465, 1180
BslI	CCNNNNNNNGG	1 cut(s)	127
BsmAI	GTCTC	1 cut(s)	153
BsmI	GAATGC	2 cut(s)	221, 1006
BsnI	GGCC	2 cut(s)	5, 1213
BsoBI	CYCGRG	1 cut(s)	446
Bsp1286I	GDGCHC	1 cut(s)	294
Bsp1407I	TGTACA	1 cut(s)	356
Bsp143I	GATC	5 cut(s)	335, 641, 818, 1150, 1196
BspACI	CCGC	3 cut(s)	6, 24, 560
BspANI	GGCC	2 cut(s)	5, 1213
BspCNI	CTCAG	2 cut(s)	409, 649
BspFNI	CGCG	2 cut(s)	8, 815
BspLI	GGNNCC	2 cut(s)	259, 1036
BspMI	ACCTGC	1 cut(s)	1102
BspOI	GCTAGC	1 cut(s)	656
BspPI	GGATC	3 cut(s)	636, 1145, 1204
BsrFI	RCCGGY	1 cut(s)	464
BsrGI	TGTACA	1 cut(s)	356
BsrI	ACTGG	2 cut(s)	943, 1075
BssAI	RCCGGY	1 cut(s)	464
BssMI	GATC	5 cut(s)	335, 641, 818, 1150, 1196
BssNAI	GTATAC	1 cut(s)	275
BssNI	GRCGYC	1 cut(s)	366
Bst1107I	GTATAC	1 cut(s)	275
Bst4CI	ACNGT	6 cut(s)	242, 356, 520, 649, 951, 1104
Bst6I	CTCTTC	5 cut(s)	46, 126, 395, 446, 1045
BstACI	GRCGYC	1 cut(s)	366
BstAPI	GCANNNNNTGC	1 cut(s)	1073
BstAUI	TGTACA	1 cut(s)	356
BstC8I	GCNNGC	5 cut(s)	24, 654, 813, 1207, 1211
BstDEI	CTNAG	3 cut(s)	245, 396, 657
BstF5I	GGATG	3 cut(s)	338, 1024, 1207
BstFNI	CGCG	2 cut(s)	8, 815
BstH2I	RGCGCY	1 cut(s)	901
BstHHI	GCGC	1 cut(s)	900
BstKTI	GATC	5 cut(s)	338, 644, 821, 1153, 1199
BstMAI	GTCTC	1 cut(s)	153
BstMBI	GATC	5 cut(s)	335, 641, 818, 1150, 1196
BstMWI	GCNNNNNNNGC	5 cut(s)	559, 821, 830, 1073, 1140
BstSFI	CTRYAG	2 cut(s)	789, 1062
BstUI	CGCG	2 cut(s)	8, 815
BstV1I	GCAGC	4 cut(s)	506, 692, 842, 1247
BstV2I	GAAGAC	1 cut(s)	60
BstX2I	RGATCY	3 cut(s)	641, 818, 1150
BstYI	RGATCY	3 cut(s)	641, 818, 1150
BstZ17I	GTATAC	1 cut(s)	275
BsuI	GTATCC	1 cut(s)	339
BsuRI	GGCC	2 cut(s)	5, 1213
BtgZI	GCGATG	1 cut(s)	713
BtsCI	GGATG	3 cut(s)	338, 1024, 1207
BtsIMutI	CAGTG	2 cut(s)	654, 1116
BveI	ACCTGC	1 cut(s)	1102
Cac8I	GCNNGC	5 cut(s)	24, 654, 813, 1207, 1211
CaiI	CAGNNNCTG	2 cut(s)	1070, 1238
CfoI	GCGC	1 cut(s)	900
Cfr10I	RCCGGY	1 cut(s)	464
Cfr13I	GGNCC	1 cut(s)	65
Csp6I	GTAC	1 cut(s)	357
CviAII	CATG	2 cut(s)	434, 1048
CviQI	GTAC	1 cut(s)	357
DdeI	CTNAG	3 cut(s)	245, 396, 657
DpnI	GATC	5 cut(s)	337, 643, 820, 1152, 1198
DpnII	GATC	5 cut(s)	335, 641, 818, 1150, 1196
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	5 cut(s)	46, 126, 395, 446, 1045
EarI	CTCTTC	5 cut(s)	46, 126, 395, 446, 1045
Eco32I	GATATC	1 cut(s)	1058
Eco47I	GGWCC	1 cut(s)	65
Eco57I	CTGAAG	2 cut(s)	69, 822
Eco88I	CYCGRG	1 cut(s)	446
EcoRI	GAATTC	1 cut(s)	282
EcoRV	GATATC	1 cut(s)	1058
FaeI	CATG	2 cut(s)	437, 1051
FalI	AAGNNNNNCTT	2 cut(s)	11, 43
FatI	CATG	2 cut(s)	433, 1047
FauI	CCCGC	1 cut(s)	31
FauNDI	CATATG	1 cut(s)	1015
FblI	GTMKAC	1 cut(s)	274
Fnu4HI	GCNGC	5 cut(s)	6, 495, 681, 831, 1236
FokI	GGATG	3 cut(s)	325, 1011, 1214
Fsp4HI	GCNGC	5 cut(s)	6, 495, 681, 831, 1236
FspBI	CTAG	4 cut(s)	498, 653, 891, 1020
GlaI	GCGC	1 cut(s)	899
GluI	GCNGC	5 cut(s)	6, 495, 681, 831, 1236
GsaI	CCCAGC	2 cut(s)	1113, 1242
GsuI	CTGGAG	1 cut(s)	926
HaeII	RGCGCY	1 cut(s)	901
HaeIII	GGCC	2 cut(s)	5, 1213
HapII	CCGG	2 cut(s)	465, 1180
HhaI	GCGC	1 cut(s)	900
Hin1I	GRCGYC	1 cut(s)	366
Hin1II	CATG	2 cut(s)	437, 1051
Hin6I	GCGC	1 cut(s)	898
HinP1I	GCGC	1 cut(s)	898
HinfI	GANTC	6 cut(s)	146, 197, 205, 794, 986, 1183
HpaII	CCGG	2 cut(s)	465, 1180
HphI	GGTGA	4 cut(s)	329, 374, 905, 962
Hpy166II	GTNNAC	2 cut(s)	275, 913
Hpy188I	TCNGA	6 cut(s)	49, 399, 411, 799, 841, 1201
Hpy188III	TCNNGA	5 cut(s)	101, 255, 287, 448, 1194
Hpy8I	GTNNAC	2 cut(s)	275, 913
Hpy99I	CGWCG	6 cut(s)	62, 65, 80, 107, 110, 113
HpyAV	CCTTC	5 cut(s)	8, 176, 432, 574, 846
HpyCH4III	ACNGT	6 cut(s)	242, 356, 520, 649, 951, 1104
HpyCH4IV	ACGT	2 cut(s)	366, 886
HpyCH4V	TGCA	5 cut(s)	219, 494, 824, 866, 1097
HpyF10VI	GCNNNNNNNGC	5 cut(s)	559, 821, 830, 1073, 1140
HpyF3I	CTNAG	3 cut(s)	245, 396, 657
HpySE526I	ACGT	2 cut(s)	366, 886
Hsp92I	GRCGYC	1 cut(s)	366
Hsp92II	CATG	2 cut(s)	437, 1051
HspAI	GCGC	1 cut(s)	898
Kzo9I	GATC	5 cut(s)	335, 641, 818, 1150, 1196
LmnI	GCTCC	4 cut(s)	550, 677, 1009, 1040
Lsp1109I	GCAGC	4 cut(s)	506, 692, 842, 1247
LweI	GCATC	2 cut(s)	1106, 1192
MaeI	CTAG	4 cut(s)	498, 653, 891, 1020
MaeII	ACGT	2 cut(s)	366, 886
MaeIII	GTNAC	4 cut(s)	362, 743, 945, 968
MalI	GATC	5 cut(s)	337, 643, 820, 1152, 1198
MboI	GATC	5 cut(s)	335, 641, 818, 1150, 1196
MboII	GAAGA	7 cut(s)	33, 62, 65, 143, 382, 463, 1032
MflI	RGATCY	3 cut(s)	641, 818, 1150
MhlI	GDGCHC	1 cut(s)	294
MluCI	AATT	8 cut(s)	249, 263, 282, 758, 963, 1126, 1162, 1187
MlyI	GAGTC	1 cut(s)	155
MmeI	TCCRAC	3 cut(s)	180, 602, 959
MseI	TTAA	2 cut(s)	302, 351
MslI	CAYNNNNRTG	1 cut(s)	999
MspA1I	CMGCKG	1 cut(s)	1238
MspI	CCGG	2 cut(s)	465, 1180
Mva1269I	GAATGC	2 cut(s)	221, 1006
MvnI	CGCG	2 cut(s)	8, 815
MwoI	GCNNNNNNNGC	5 cut(s)	559, 821, 830, 1073, 1140
NdeI	CATATG	1 cut(s)	1015
NdeII	GATC	5 cut(s)	335, 641, 818, 1150, 1196
NheI	GCTAGC	1 cut(s)	652
NlaIII	CATG	2 cut(s)	437, 1051
NlaIV	GGNNCC	2 cut(s)	259, 1036
NmuCI	GTSAC	4 cut(s)	362, 743, 945, 968
PcsI	WCGNNNNNNNCGW	2 cut(s)	108, 114
PctI	GAATGC	2 cut(s)	221, 1006
PfeI	GAWTC	5 cut(s)	197, 205, 794, 986, 1183
PkrI	GCNGC	5 cut(s)	7, 496, 682, 832, 1237
PleI	GAGTC	1 cut(s)	154
PpsI	GAGTC	1 cut(s)	154
Psp1406I	AACGTT	1 cut(s)	886
PspFI	CCCAGC	2 cut(s)	1109, 1238
PspN4I	GGNNCC	2 cut(s)	259, 1036
PspPI	GGNCC	1 cut(s)	65
PstNI	CAGNNNCTG	2 cut(s)	1070, 1238
PsuI	RGATCY	3 cut(s)	641, 818, 1150
PvuII	CAGCTG	1 cut(s)	1238
RsaI	GTAC	1 cut(s)	358
RsaNI	GTAC	1 cut(s)	357
RseI	CAYNNNNRTG	1 cut(s)	999
SaqAI	TTAA	2 cut(s)	302, 351
SatI	GCNGC	5 cut(s)	6, 495, 681, 831, 1236
Sau3AI	GATC	5 cut(s)	335, 641, 818, 1150, 1196
Sau96I	GGNCC	1 cut(s)	65
SchI	GAGTC	1 cut(s)	155
SduI	GDGCHC	1 cut(s)	294
SfaNI	GCATC	2 cut(s)	1106, 1192
SfcI	CTRYAG	2 cut(s)	789, 1062
SinI	GGWCC	1 cut(s)	65
SmiMI	CAYNNNNRTG	1 cut(s)	999
Sse9I	AATT	8 cut(s)	249, 263, 282, 758, 963, 1126, 1162, 1187
SsiI	CCGC	3 cut(s)	6, 24, 560
SspMI	CTAG	4 cut(s)	498, 653, 891, 1020
TaaI	ACNGT	6 cut(s)	242, 356, 520, 649, 951, 1104
TaiI	ACGT	2 cut(s)	369, 889
TaqI	TCGA	3 cut(s)	138, 719, 961
TasI	AATT	8 cut(s)	249, 263, 282, 758, 963, 1126, 1162, 1187
TatI	WGTACW	1 cut(s)	356
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	5 cut(s)	197, 205, 794, 986, 1183
Tru1I	TTAA	2 cut(s)	302, 351
Tru9I	TTAA	2 cut(s)	302, 351
TscAI	CASTG	2 cut(s)	654, 1123
TseFI	GTSAC	4 cut(s)	362, 743, 945, 968
TseI	GCWGC	4 cut(s)	494, 680, 830, 1235
Tsp45I	GTSAC	4 cut(s)	362, 743, 945, 968
TspDTI	ATGAA	7 cut(s)	195, 395, 617, 645, 716, 752, 1208
TspGWI	ACGGA	1 cut(s)	78
TspRI	CASTG	2 cut(s)	654, 1123
VpaK11BI	GGWCC	1 cut(s)	65
XapI	RAATTY	3 cut(s)	249, 282, 963
XmiI	GTMKAC	1 cut(s)	274
XspI	CTAG	4 cut(s)	498, 653, 891, 1020
ZraI	GACGTC	1 cut(s)	367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.