zinc finger CCCH domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G66840 AT5G66840 |
| fragaria_vesca | FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 |
| malus_domestica | MD02G1168400.v1.1 |
| prunus_persica | Prupe.7G136600_v2.0.a1 Prupe.7G136600_v2.0.a1 Prupe.7G136600_v2.0.a1 |
| pyrus_communis | pycom02g13550 pycom15g24350 pycom15g24360 |
| rosa_chinensis | RchiOBHm_Chr2g0104981 |
| rosa_laevigata | RLG00000017385 |
| rosa_multiflora | Rmu_sc0000641.1_g000032 |
| rosa_roxburghii | Rroxscaffold_2G00138610 |
| rosa_rugosa | Rorug02G0124300 Rorug02G0124400 Rorug02G0124500 Rorug02G0124600 Rorug02G0124700 Rorug02G0124800 |
| rosa_samantha | Rh2AG175100 Rh2CG179700 Rh2DG181500 |
| rosa_wichuraiana | Rw2G013760 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 31, 136 |
| AatII | GACGTC | 3 cut(s) | 35, 140, 633 |
| AccB1I | GGYRCC | 2 cut(s) | 70, 175 |
| AccI | GTMKAC | 3 cut(s) | 35, 140, 538 |
| AciI | CCGC | 1 cut(s) | 758 |
| AclI | AACGTT | 1 cut(s) | 1150 |
| AclWI | GGATC | 6 cut(s) | 59, 106, 211, 900, 1382, 1441 |
| AcoI | YGGCCR | 2 cut(s) | 3, 108 |
| AcsI | RAATTY | 3 cut(s) | 513, 546, 1227 |
| AcuI | CTGAAG | 1 cut(s) | 1086 |
| AcyI | GRCGYC | 3 cut(s) | 32, 137, 630 |
| AfaI | GTAC | 1 cut(s) | 622 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 282 |
| AgsI | TTSAA | 5 cut(s) | 469, 551, 788, 1308, 1411 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 244 |
| AluBI | AGCT | 6 cut(s) | 750, 817, 899, 920, 1350, 1475 |
| AluI | AGCT | 6 cut(s) | 750, 817, 899, 920, 1350, 1475 |
| Alw21I | GWGCWC | 1 cut(s) | 558 |
| Alw26I | GTCTC | 1 cut(s) | 417 |
| AlwI | GGATC | 6 cut(s) | 59, 106, 211, 900, 1382, 1441 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 1334, 1442, 1475 |
| AoxI | GGCC | 5 cut(s) | 3, 108, 255, 273, 1448 |
| ApeKI | GCWGC | 3 cut(s) | 944, 1094, 1472 |
| ApoI | RAATTY | 3 cut(s) | 513, 546, 1227 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 490, 522 |
| AspLEI | GCGC | 3 cut(s) | 62, 167, 1164 |
| AspS9I | GGNCC | 1 cut(s) | 338 |
| AsuHPI | GGTGA | 6 cut(s) | 55, 160, 170, 240, 593, 1169 |
| AsuNHI | GCTAGC | 1 cut(s) | 916 |
| AvaII | GGWCC | 1 cut(s) | 338 |
| BanI | GGYRCC | 2 cut(s) | 70, 175 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 995, 1027 |
| BbsI | GAAGAC | 1 cut(s) | 333 |
| Bbv12I | GWGCWC | 1 cut(s) | 558 |
| BbvI | GCAGC | 3 cut(s) | 956, 1106, 1484 |
| BccI | CCATC | 6 cut(s) | 82, 100, 187, 247, 566, 1246 |
| BciVI | GTATCC | 2 cut(s) | 310, 603 |
| BclI | TGATCA | 1 cut(s) | 382 |
| BcoDI | GTCTC | 1 cut(s) | 417 |
| BfaI | CTAG | 3 cut(s) | 917, 1155, 1284 |
| BfmI | CTRYAG | 2 cut(s) | 1053, 1326 |
| BfoI | RGCGCY | 1 cut(s) | 1165 |
| BfuI | GTATCC | 2 cut(s) | 310, 603 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1377 |
| BglII | AGATCT | 1 cut(s) | 1082 |
| BisI | GCNGC | 4 cut(s) | 759, 945, 1095, 1473 |
| BlsI | GCNGC | 4 cut(s) | 760, 946, 1096, 1474 |
| Bme18I | GGWCC | 1 cut(s) | 338 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 244 |
| BmgT120I | GGNCC | 1 cut(s) | 338 |
| BmiI | GGNNCC | 4 cut(s) | 72, 177, 523, 1300 |
| BmsI | GCATC | 2 cut(s) | 1327, 1429 |
| BmtI | GCTAGC | 1 cut(s) | 920 |
| BpiI | GAAGAC | 1 cut(s) | 333 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 401, 433 |
| BpmI | CTGGAG | 1 cut(s) | 1190 |
| Bsa29I | ATCGAT | 2 cut(s) | 77, 182 |
| BsaHI | GRCGYC | 3 cut(s) | 32, 137, 630 |
| BsaJI | CCNNGG | 1 cut(s) | 270 |
| BsaWI | WCCGGW | 1 cut(s) | 1416 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 277, 307, 633, 663 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 282 |
| Bse118I | RCCGGY | 2 cut(s) | 5, 728 |
| Bse1I | ACTGG | 1 cut(s) | 1207 |
| BseCI | ATCGAT | 2 cut(s) | 77, 182 |
| BseDI | CCNNGG | 1 cut(s) | 270 |
| BseGI | GGATG | 2 cut(s) | 1234, 1288 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 282 |
| BseMII | CTCAG | 3 cut(s) | 64, 674, 912 |
| BseNI | ACTGG | 1 cut(s) | 1207 |
| BseRI | GAGGAG | 1 cut(s) | 298 |
| BseXI | GCAGC | 3 cut(s) | 956, 1106, 1484 |
| BseYI | CCCAGC | 1 cut(s) | 1475 |
| Bsh1285I | CGRYCG | 1 cut(s) | 81 |
| BshFI | GGCC | 5 cut(s) | 5, 110, 257, 275, 1450 |
| BshNI | GGYRCC | 2 cut(s) | 70, 175 |
| BshVI | ATCGAT | 2 cut(s) | 77, 182 |
| BsiEI | CGRYCG | 1 cut(s) | 81 |
| BsiHKAI | GWGCWC | 1 cut(s) | 558 |
| BsiSI | CCGG | 6 cut(s) | 6, 68, 111, 173, 729, 1417 |
| BslFI | GGGAC | 1 cut(s) | 641 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 282 |
| BsmAI | GTCTC | 1 cut(s) | 417 |
| BsmFI | GGGAC | 1 cut(s) | 641 |
| BsmI | GAATGC | 2 cut(s) | 485, 1270 |
| BsnI | GGCC | 5 cut(s) | 5, 110, 257, 275, 1450 |
| Bsp1286I | GDGCHC | 1 cut(s) | 558 |
| Bsp1407I | TGTACA | 1 cut(s) | 620 |
| BspACI | CCGC | 1 cut(s) | 758 |
| BspANI | GGCC | 5 cut(s) | 5, 110, 257, 275, 1450 |
| BspCNI | CTCAG | 3 cut(s) | 63, 673, 913 |
| BspDI | ATCGAT | 2 cut(s) | 77, 182 |
| BspHI | TCATGA | 1 cut(s) | 232 |
| BspLI | GGNNCC | 4 cut(s) | 72, 177, 523, 1300 |
| BspOI | GCTAGC | 1 cut(s) | 920 |
| BspPI | GGATC | 6 cut(s) | 59, 106, 211, 900, 1382, 1441 |
| BspT107I | GGYRCC | 2 cut(s) | 70, 175 |
| BsrFI | RCCGGY | 2 cut(s) | 5, 728 |
| BsrGI | TGTACA | 1 cut(s) | 620 |
| BsrI | ACTGG | 1 cut(s) | 1207 |
| BssAI | RCCGGY | 2 cut(s) | 5, 728 |
| BssECI | CCNNGG | 1 cut(s) | 270 |
| BssNAI | GTATAC | 1 cut(s) | 539 |
| BssNI | GRCGYC | 3 cut(s) | 32, 137, 630 |
| BssT1I | CCWWGG | 1 cut(s) | 270 |
| Bst1107I | GTATAC | 1 cut(s) | 539 |
| Bst4CI | ACNGT | 6 cut(s) | 506, 620, 784, 913, 1215, 1312 |
| Bst6I | CTCTTC | 5 cut(s) | 11, 116, 390, 659, 710 |
| BstACI | GRCGYC | 3 cut(s) | 32, 137, 630 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1085, 1337 |
| BstAUI | TGTACA | 1 cut(s) | 620 |
| BstC8I | GCNNGC | 4 cut(s) | 918, 1077, 1444, 1448 |
| BstDEI | CTNAG | 4 cut(s) | 50, 509, 660, 921 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 280 |
| BstF5I | GGATG | 2 cut(s) | 1234, 1288 |
| BstH2I | RGCGCY | 1 cut(s) | 1165 |
| BstHHI | GCGC | 3 cut(s) | 62, 167, 1164 |
| BstMAI | GTCTC | 1 cut(s) | 417 |
| BstMCI | CGRYCG | 1 cut(s) | 81 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 68, 173, 1085, 1094, 1337, 1377 |
| BstSFI | CTRYAG | 2 cut(s) | 1053, 1326 |
| BstV1I | GCAGC | 3 cut(s) | 956, 1106, 1484 |
| BstV2I | GAAGAC | 1 cut(s) | 333 |
| BstX2I | RGATCY | 4 cut(s) | 64, 905, 1082, 1387 |
| BstYI | RGATCY | 4 cut(s) | 64, 905, 1082, 1387 |
| BstZ17I | GTATAC | 1 cut(s) | 539 |
| Bsu15I | ATCGAT | 2 cut(s) | 77, 182 |
| BsuI | GTATCC | 2 cut(s) | 310, 603 |
| BsuRI | GGCC | 5 cut(s) | 5, 110, 257, 275, 1450 |
| BsuTUI | ATCGAT | 2 cut(s) | 77, 182 |
| BtgZI | GCGATG | 1 cut(s) | 977 |
| BtsCI | GGATG | 2 cut(s) | 1234, 1288 |
| BtsIMutI | CAGTG | 3 cut(s) | 58, 918, 1353 |
| Cac8I | GCNNGC | 4 cut(s) | 918, 1077, 1444, 1448 |
| CaiI | CAGNNNCTG | 3 cut(s) | 1334, 1442, 1475 |
| CciI | TCATGA | 1 cut(s) | 232 |
| CfoI | GCGC | 3 cut(s) | 62, 167, 1164 |
| Cfr10I | RCCGGY | 2 cut(s) | 5, 728 |
| Cfr13I | GGNCC | 1 cut(s) | 338 |
| ClaI | ATCGAT | 2 cut(s) | 77, 182 |
| CseI | GACGC | 1 cut(s) | 234 |
| Csp6I | GTAC | 1 cut(s) | 621 |
| CviAII | CATG | 2 cut(s) | 233, 698 |
| CviQI | GTAC | 1 cut(s) | 621 |
| DdeI | CTNAG | 4 cut(s) | 50, 509, 660, 921 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 31, 136 |
| DriI | GACNNNNNGTC | 1 cut(s) | 244 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 31, 136 |
| EaeI | YGGCCR | 2 cut(s) | 3, 108 |
| Eam1104I | CTCTTC | 5 cut(s) | 11, 116, 390, 659, 710 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 244 |
| EarI | CTCTTC | 5 cut(s) | 11, 116, 390, 659, 710 |
| Eco130I | CCWWGG | 1 cut(s) | 270 |
| Eco32I | GATATC | 1 cut(s) | 1322 |
| Eco47I | GGWCC | 1 cut(s) | 338 |
| Eco57I | CTGAAG | 1 cut(s) | 1086 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 280 |
| EcoRI | GAATTC | 1 cut(s) | 546 |
| EcoRV | GATATC | 1 cut(s) | 1322 |
| EcoT14I | CCWWGG | 1 cut(s) | 270 |
| ErhI | CCWWGG | 1 cut(s) | 270 |
| FaeI | CATG | 2 cut(s) | 236, 701 |
| FaqI | GGGAC | 1 cut(s) | 641 |
| FatI | CATG | 2 cut(s) | 232, 697 |
| FauNDI | CATATG | 1 cut(s) | 1279 |
| FbaI | TGATCA | 1 cut(s) | 382 |
| FblI | GTMKAC | 3 cut(s) | 35, 140, 538 |
| Fnu4HI | GCNGC | 4 cut(s) | 759, 945, 1095, 1473 |
| FokI | GGATG | 2 cut(s) | 1221, 1275 |
| Fsp4HI | GCNGC | 4 cut(s) | 759, 945, 1095, 1473 |
| FspBI | CTAG | 3 cut(s) | 917, 1155, 1284 |
| GlaI | GCGC | 3 cut(s) | 61, 166, 1163 |
| GluI | GCNGC | 4 cut(s) | 759, 945, 1095, 1473 |
| GsaI | CCCAGC | 1 cut(s) | 1479 |
| GsuI | CTGGAG | 1 cut(s) | 1190 |
| HaeII | RGCGCY | 1 cut(s) | 1165 |
| HaeIII | GGCC | 5 cut(s) | 5, 110, 257, 275, 1450 |
| HapII | CCGG | 6 cut(s) | 6, 68, 111, 173, 729, 1417 |
| HgaI | GACGC | 1 cut(s) | 234 |
| HhaI | GCGC | 3 cut(s) | 62, 167, 1164 |
| Hin1I | GRCGYC | 3 cut(s) | 32, 137, 630 |
| Hin1II | CATG | 2 cut(s) | 236, 701 |
| Hin6I | GCGC | 3 cut(s) | 60, 165, 1162 |
| HinP1I | GCGC | 3 cut(s) | 60, 165, 1162 |
| HincII | GTYRAC | 3 cut(s) | 36, 135, 141 |
| HindII | GTYRAC | 3 cut(s) | 36, 135, 141 |
| HinfI | GANTC | 6 cut(s) | 410, 461, 469, 1058, 1250, 1420 |
| HpaII | CCGG | 6 cut(s) | 6, 68, 111, 173, 729, 1417 |
| HphI | GGTGA | 6 cut(s) | 55, 160, 170, 240, 593, 1169 |
| Hpy166II | GTNNAC | 6 cut(s) | 36, 135, 141, 539, 824, 1177 |
| Hpy188I | TCNGA | 8 cut(s) | 103, 208, 222, 663, 675, 1063, 1105, 1438 |
| Hpy188III | TCNNGA | 5 cut(s) | 233, 519, 551, 1403, 1431 |
| Hpy8I | GTNNAC | 6 cut(s) | 36, 135, 141, 539, 824, 1177 |
| HpyAV | CCTTC | 5 cut(s) | 50, 440, 696, 838, 1110 |
| HpyCH4III | ACNGT | 6 cut(s) | 506, 620, 784, 913, 1215, 1312 |
| HpyCH4IV | ACGT | 6 cut(s) | 32, 131, 137, 433, 630, 1150 |
| HpyCH4V | TGCA | 3 cut(s) | 483, 1088, 1130 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 68, 173, 1085, 1094, 1337, 1377 |
| HpyF3I | CTNAG | 4 cut(s) | 50, 509, 660, 921 |
| HpySE526I | ACGT | 6 cut(s) | 32, 131, 137, 433, 630, 1150 |
| Hsp92I | GRCGYC | 3 cut(s) | 32, 137, 630 |
| Hsp92II | CATG | 2 cut(s) | 236, 701 |
| HspAI | GCGC | 3 cut(s) | 60, 165, 1162 |
| Ksp22I | TGATCA | 1 cut(s) | 382 |
| LmnI | GCTCC | 4 cut(s) | 814, 941, 1273, 1304 |
| Lsp1109I | GCAGC | 3 cut(s) | 956, 1106, 1484 |
| LweI | GCATC | 2 cut(s) | 1327, 1429 |
| MaeI | CTAG | 3 cut(s) | 917, 1155, 1284 |
| MaeII | ACGT | 6 cut(s) | 32, 131, 137, 433, 630, 1150 |
| MaeIII | GTNAC | 3 cut(s) | 246, 1007, 1209 |
| MboII | GAAGA | 7 cut(s) | 28, 133, 335, 338, 407, 646, 727 |
| MflI | RGATCY | 4 cut(s) | 64, 905, 1082, 1387 |
| MhlI | GDGCHC | 1 cut(s) | 558 |
| MluCI | AATT | 9 cut(s) | 216, 513, 527, 546, 612, 1022, 1227, 1363, 1424 |
| MlyI | GAGTC | 1 cut(s) | 419 |
| MmeI | TCCRAC | 4 cut(s) | 444, 866, 1144, 1223 |
| MseI | TTAA | 2 cut(s) | 566, 615 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1263 |
| MspA1I | CMGCKG | 1 cut(s) | 1475 |
| MspI | CCGG | 6 cut(s) | 6, 68, 111, 173, 729, 1417 |
| Mva1269I | GAATGC | 2 cut(s) | 485, 1270 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 68, 173, 1085, 1094, 1337, 1377 |
| NdeI | CATATG | 1 cut(s) | 1279 |
| NheI | GCTAGC | 1 cut(s) | 916 |
| NlaIII | CATG | 2 cut(s) | 236, 701 |
| NlaIV | GGNNCC | 4 cut(s) | 72, 177, 523, 1300 |
| NmuCI | GTSAC | 3 cut(s) | 246, 1007, 1209 |
| PagI | TCATGA | 1 cut(s) | 232 |
| PcsI | WCGNNNNNNNCGW | 6 cut(s) | 29, 32, 134, 137, 369, 372 |
| PctI | GAATGC | 2 cut(s) | 485, 1270 |
| PfeI | GAWTC | 5 cut(s) | 461, 469, 1058, 1250, 1420 |
| PkrI | GCNGC | 4 cut(s) | 760, 946, 1096, 1474 |
| Ple19I | CGATCG | 1 cut(s) | 81 |
| PleI | GAGTC | 1 cut(s) | 418 |
| PpsI | GAGTC | 1 cut(s) | 418 |
| Psp1406I | AACGTT | 1 cut(s) | 1150 |
| PspFI | CCCAGC | 1 cut(s) | 1475 |
| PspN4I | GGNNCC | 4 cut(s) | 72, 177, 523, 1300 |
| PspPI | GGNCC | 1 cut(s) | 338 |
| PstNI | CAGNNNCTG | 3 cut(s) | 1334, 1442, 1475 |
| PsuI | RGATCY | 4 cut(s) | 64, 905, 1082, 1387 |
| PvuI | CGATCG | 1 cut(s) | 81 |
| PvuII | CAGCTG | 1 cut(s) | 1475 |
| RsaI | GTAC | 1 cut(s) | 622 |
| RsaNI | GTAC | 1 cut(s) | 621 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1263 |
| SalI | GTCGAC | 2 cut(s) | 34, 139 |
| SaqAI | TTAA | 2 cut(s) | 566, 615 |
| SatI | GCNGC | 4 cut(s) | 759, 945, 1095, 1473 |
| Sau96I | GGNCC | 1 cut(s) | 338 |
| SchI | GAGTC | 1 cut(s) | 419 |
| SduI | GDGCHC | 1 cut(s) | 558 |
| SfaNI | GCATC | 2 cut(s) | 1327, 1429 |
| SfcI | CTRYAG | 2 cut(s) | 1053, 1326 |
| SgrDI | CGTCGACG | 2 cut(s) | 34, 139 |
| SinI | GGWCC | 1 cut(s) | 338 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1263 |
| Sse9I | AATT | 9 cut(s) | 216, 513, 527, 546, 612, 1022, 1227, 1363, 1424 |
| SsiI | CCGC | 1 cut(s) | 758 |
| SspMI | CTAG | 3 cut(s) | 917, 1155, 1284 |
| StyI | CCWWGG | 1 cut(s) | 270 |
| TaaI | ACNGT | 6 cut(s) | 506, 620, 784, 913, 1215, 1312 |
| TaiI | ACGT | 6 cut(s) | 35, 134, 140, 436, 633, 1153 |
| TaqI | TCGA | 7 cut(s) | 35, 77, 140, 182, 402, 983, 1225 |
| TasI | AATT | 9 cut(s) | 216, 513, 527, 546, 612, 1022, 1227, 1363, 1424 |
| TatI | WGTACW | 1 cut(s) | 620 |
| TauI | GCSGC | 1 cut(s) | 761 |
| TfiI | GAWTC | 5 cut(s) | 461, 469, 1058, 1250, 1420 |
| Tru1I | TTAA | 2 cut(s) | 566, 615 |
| Tru9I | TTAA | 2 cut(s) | 566, 615 |
| TscAI | CASTG | 3 cut(s) | 58, 918, 1360 |
| TseFI | GTSAC | 3 cut(s) | 246, 1007, 1209 |
| TseI | GCWGC | 3 cut(s) | 944, 1094, 1472 |
| Tsp45I | GTSAC | 3 cut(s) | 246, 1007, 1209 |
| TspDTI | ATGAA | 7 cut(s) | 221, 659, 881, 909, 980, 1016, 1445 |
| TspGWI | ACGGA | 3 cut(s) | 53, 158, 351 |
| TspRI | CASTG | 3 cut(s) | 58, 918, 1360 |
| VpaK11BI | GGWCC | 1 cut(s) | 338 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 280 |
| XapI | RAATTY | 3 cut(s) | 513, 546, 1227 |
| XmiI | GTMKAC | 3 cut(s) | 35, 140, 538 |
| XspI | CTAG | 3 cut(s) | 917, 1155, 1284 |
| ZraI | GACGTC | 3 cut(s) | 33, 138, 631 |