Rmu_sc0000641.1_g000032

zinc finger CCCH domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000641.1
Physical Location & Seq
Reverse (-)
126550 .. 130383
3834 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000641.1_g000032.1.cds

Sequence Viewer

Length: 1512 bp
atggccggtggcgagaagaggacgacgatgacgtcgacggaggtgatactcagtgaaggcgcagatccggcaccatcgatcgtcgccgatgttggtggatcagagatggccggaggcgagaagaggacgacgttgacgtcgacggaggtgatactcggtgaaagcgcaaatccggcaccatcgatagtcgccgatgttggtggatcagaggtcgcaattcagagtgagtttcatgatgacaatgcgtcaccgatggcctctatcatctccttggcctcattgaggagattgggttgtgtatcctcctatgctttcttttgcgaagaagacgacgacggaccagagagcgacgactatgattacgacgaggacgacgacgatgatcaaatggaggaagaggtcgatgacgagtctctctccaacaaagtcatacgtttcctcaaagaagggagtgatttagattctttgaatctcaaagaatgcaaagcctatttgcgaaagcacggtcttagaatttcaggaaccaaattgatttgtatacaaagaattcaagagcaccagagattaaaagatggaaatggtgaagcattgtatcccagatcatcttttgtaattaactgtacaggggacgtctgtaagggagatgtagtcctcttcactcagaaagttcatcagaagtttgataagatgacaaggcatggaagggttcttgggaagagagttgttgccggtagggttgtcaaagaaagctatggtgcggctaaacaacagcatacttttacggttgaagtgttatggagtaggggaataaaggagctgtgtccactatttcctctgcttgtgaagggtcgcaatctctacaaaatgaaaacttttagacagcgttggagtaatgaagctgaaagatccacagtgctagctgagaagcacagacgaggtggagcagcaagacttgtgagagcgatgaaaaaatcaaagaaatcgactgccaatggaggtatgaagtgtcactaccaatcccaattctctaaaccaaacaacaagcgaaagactacagaatcagaaagggggaagcacgcaagatctgcaagagcagcaccttcagaacagatgagtttccaacaaaatgcaaggagtaaaacctctcaacgttctagtaagcgccataaagcagttcaccctaatatagatagagttccaactctccagtcacagtctaatcctcgaatttgtcatccatctcaaatagaatctcaacacaggaatgctcctttcccatatgctagtcatcccataggctccacttcaaccgtgttgagatatcctacagcaactgatgctactaccagcttcactgacagaaattatagccactatggctacatagatcctgtctataatcgggagttgaacaaccggaatcaattatcaggatcagatgctggcaggccatttcatctctatatgtcagcagctgggaactatggacatagggggagagggcaaagatga

Protein Analysis

503

Amino Acids

55.99

Weight (kDa)

9.13

Isoelectric Point (pI)

58.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 31, 136
AatII GACGTC 3 cut(s) 35, 140, 633
AccB1I GGYRCC 2 cut(s) 70, 175
AccI GTMKAC 3 cut(s) 35, 140, 538
AciI CCGC 1 cut(s) 758
AclI AACGTT 1 cut(s) 1150
AclWI GGATC 6 cut(s) 59, 106, 211, 900, 1382, 1441
AcoI YGGCCR 2 cut(s) 3, 108
AcsI RAATTY 3 cut(s) 513, 546, 1227
AcuI CTGAAG 1 cut(s) 1086
AcyI GRCGYC 3 cut(s) 32, 137, 630
AfaI GTAC 1 cut(s) 622
AfiI CCNNNNNNNGG 1 cut(s) 282
AgsI TTSAA 5 cut(s) 469, 551, 788, 1308, 1411
AhdI GACNNNNNGTC 1 cut(s) 244
AluBI AGCT 6 cut(s) 750, 817, 899, 920, 1350, 1475
AluI AGCT 6 cut(s) 750, 817, 899, 920, 1350, 1475
Alw21I GWGCWC 1 cut(s) 558
Alw26I GTCTC 1 cut(s) 417
AlwI GGATC 6 cut(s) 59, 106, 211, 900, 1382, 1441
AlwNI CAGNNNCTG 3 cut(s) 1334, 1442, 1475
AoxI GGCC 5 cut(s) 3, 108, 255, 273, 1448
ApeKI GCWGC 3 cut(s) 944, 1094, 1472
ApoI RAATTY 3 cut(s) 513, 546, 1227
ArsI GACNNNNNNTTYG 2 cut(s) 490, 522
AspLEI GCGC 3 cut(s) 62, 167, 1164
AspS9I GGNCC 1 cut(s) 338
AsuHPI GGTGA 6 cut(s) 55, 160, 170, 240, 593, 1169
AsuNHI GCTAGC 1 cut(s) 916
AvaII GGWCC 1 cut(s) 338
BanI GGYRCC 2 cut(s) 70, 175
BarI GAAGNNNNNNTAC 2 cut(s) 995, 1027
BbsI GAAGAC 1 cut(s) 333
Bbv12I GWGCWC 1 cut(s) 558
BbvI GCAGC 3 cut(s) 956, 1106, 1484
BccI CCATC 6 cut(s) 82, 100, 187, 247, 566, 1246
BciVI GTATCC 2 cut(s) 310, 603
BclI TGATCA 1 cut(s) 382
BcoDI GTCTC 1 cut(s) 417
BfaI CTAG 3 cut(s) 917, 1155, 1284
BfmI CTRYAG 2 cut(s) 1053, 1326
BfoI RGCGCY 1 cut(s) 1165
BfuI GTATCC 2 cut(s) 310, 603
BglI GCCNNNNNGGC 1 cut(s) 1377
BglII AGATCT 1 cut(s) 1082
BisI GCNGC 4 cut(s) 759, 945, 1095, 1473
BlsI GCNGC 4 cut(s) 760, 946, 1096, 1474
Bme18I GGWCC 1 cut(s) 338
BmeRI GACNNNNNGTC 1 cut(s) 244
BmgT120I GGNCC 1 cut(s) 338
BmiI GGNNCC 4 cut(s) 72, 177, 523, 1300
BmsI GCATC 2 cut(s) 1327, 1429
BmtI GCTAGC 1 cut(s) 920
BpiI GAAGAC 1 cut(s) 333
BplI GAGNNNNNCTC 2 cut(s) 401, 433
BpmI CTGGAG 1 cut(s) 1190
Bsa29I ATCGAT 2 cut(s) 77, 182
BsaHI GRCGYC 3 cut(s) 32, 137, 630
BsaJI CCNNGG 1 cut(s) 270
BsaWI WCCGGW 1 cut(s) 1416
BsaXI ACNNNNNCTCC 4 cut(s) 277, 307, 633, 663
Bsc4I CCNNNNNNNGG 1 cut(s) 282
Bse118I RCCGGY 2 cut(s) 5, 728
Bse1I ACTGG 1 cut(s) 1207
BseCI ATCGAT 2 cut(s) 77, 182
BseDI CCNNGG 1 cut(s) 270
BseGI GGATG 2 cut(s) 1234, 1288
BseLI CCNNNNNNNGG 1 cut(s) 282
BseMII CTCAG 3 cut(s) 64, 674, 912
BseNI ACTGG 1 cut(s) 1207
BseRI GAGGAG 1 cut(s) 298
BseXI GCAGC 3 cut(s) 956, 1106, 1484
BseYI CCCAGC 1 cut(s) 1475
Bsh1285I CGRYCG 1 cut(s) 81
BshFI GGCC 5 cut(s) 5, 110, 257, 275, 1450
BshNI GGYRCC 2 cut(s) 70, 175
BshVI ATCGAT 2 cut(s) 77, 182
BsiEI CGRYCG 1 cut(s) 81
BsiHKAI GWGCWC 1 cut(s) 558
BsiSI CCGG 6 cut(s) 6, 68, 111, 173, 729, 1417
BslFI GGGAC 1 cut(s) 641
BslI CCNNNNNNNGG 1 cut(s) 282
BsmAI GTCTC 1 cut(s) 417
BsmFI GGGAC 1 cut(s) 641
BsmI GAATGC 2 cut(s) 485, 1270
BsnI GGCC 5 cut(s) 5, 110, 257, 275, 1450
Bsp1286I GDGCHC 1 cut(s) 558
Bsp1407I TGTACA 1 cut(s) 620
BspACI CCGC 1 cut(s) 758
BspANI GGCC 5 cut(s) 5, 110, 257, 275, 1450
BspCNI CTCAG 3 cut(s) 63, 673, 913
BspDI ATCGAT 2 cut(s) 77, 182
BspHI TCATGA 1 cut(s) 232
BspLI GGNNCC 4 cut(s) 72, 177, 523, 1300
BspOI GCTAGC 1 cut(s) 920
BspPI GGATC 6 cut(s) 59, 106, 211, 900, 1382, 1441
BspT107I GGYRCC 2 cut(s) 70, 175
BsrFI RCCGGY 2 cut(s) 5, 728
BsrGI TGTACA 1 cut(s) 620
BsrI ACTGG 1 cut(s) 1207
BssAI RCCGGY 2 cut(s) 5, 728
BssECI CCNNGG 1 cut(s) 270
BssNAI GTATAC 1 cut(s) 539
BssNI GRCGYC 3 cut(s) 32, 137, 630
BssT1I CCWWGG 1 cut(s) 270
Bst1107I GTATAC 1 cut(s) 539
Bst4CI ACNGT 6 cut(s) 506, 620, 784, 913, 1215, 1312
Bst6I CTCTTC 5 cut(s) 11, 116, 390, 659, 710
BstACI GRCGYC 3 cut(s) 32, 137, 630
BstAPI GCANNNNNTGC 2 cut(s) 1085, 1337
BstAUI TGTACA 1 cut(s) 620
BstC8I GCNNGC 4 cut(s) 918, 1077, 1444, 1448
BstDEI CTNAG 4 cut(s) 50, 509, 660, 921
BstENI CCTNNNNNAGG 1 cut(s) 280
BstF5I GGATG 2 cut(s) 1234, 1288
BstH2I RGCGCY 1 cut(s) 1165
BstHHI GCGC 3 cut(s) 62, 167, 1164
BstMAI GTCTC 1 cut(s) 417
BstMCI CGRYCG 1 cut(s) 81
BstMWI GCNNNNNNNGC 6 cut(s) 68, 173, 1085, 1094, 1337, 1377
BstSFI CTRYAG 2 cut(s) 1053, 1326
BstV1I GCAGC 3 cut(s) 956, 1106, 1484
BstV2I GAAGAC 1 cut(s) 333
BstX2I RGATCY 4 cut(s) 64, 905, 1082, 1387
BstYI RGATCY 4 cut(s) 64, 905, 1082, 1387
BstZ17I GTATAC 1 cut(s) 539
Bsu15I ATCGAT 2 cut(s) 77, 182
BsuI GTATCC 2 cut(s) 310, 603
BsuRI GGCC 5 cut(s) 5, 110, 257, 275, 1450
BsuTUI ATCGAT 2 cut(s) 77, 182
BtgZI GCGATG 1 cut(s) 977
BtsCI GGATG 2 cut(s) 1234, 1288
BtsIMutI CAGTG 3 cut(s) 58, 918, 1353
Cac8I GCNNGC 4 cut(s) 918, 1077, 1444, 1448
CaiI CAGNNNCTG 3 cut(s) 1334, 1442, 1475
CciI TCATGA 1 cut(s) 232
CfoI GCGC 3 cut(s) 62, 167, 1164
Cfr10I RCCGGY 2 cut(s) 5, 728
Cfr13I GGNCC 1 cut(s) 338
ClaI ATCGAT 2 cut(s) 77, 182
CseI GACGC 1 cut(s) 234
Csp6I GTAC 1 cut(s) 621
CviAII CATG 2 cut(s) 233, 698
CviQI GTAC 1 cut(s) 621
DdeI CTNAG 4 cut(s) 50, 509, 660, 921
DrdI GACNNNNNNGTC 2 cut(s) 31, 136
DriI GACNNNNNGTC 1 cut(s) 244
DseDI GACNNNNNNGTC 2 cut(s) 31, 136
EaeI YGGCCR 2 cut(s) 3, 108
Eam1104I CTCTTC 5 cut(s) 11, 116, 390, 659, 710
Eam1105I GACNNNNNGTC 1 cut(s) 244
EarI CTCTTC 5 cut(s) 11, 116, 390, 659, 710
Eco130I CCWWGG 1 cut(s) 270
Eco32I GATATC 1 cut(s) 1322
Eco47I GGWCC 1 cut(s) 338
Eco57I CTGAAG 1 cut(s) 1086
EcoNI CCTNNNNNAGG 1 cut(s) 280
EcoRI GAATTC 1 cut(s) 546
EcoRV GATATC 1 cut(s) 1322
EcoT14I CCWWGG 1 cut(s) 270
ErhI CCWWGG 1 cut(s) 270
FaeI CATG 2 cut(s) 236, 701
FaqI GGGAC 1 cut(s) 641
FatI CATG 2 cut(s) 232, 697
FauNDI CATATG 1 cut(s) 1279
FbaI TGATCA 1 cut(s) 382
FblI GTMKAC 3 cut(s) 35, 140, 538
Fnu4HI GCNGC 4 cut(s) 759, 945, 1095, 1473
FokI GGATG 2 cut(s) 1221, 1275
Fsp4HI GCNGC 4 cut(s) 759, 945, 1095, 1473
FspBI CTAG 3 cut(s) 917, 1155, 1284
GlaI GCGC 3 cut(s) 61, 166, 1163
GluI GCNGC 4 cut(s) 759, 945, 1095, 1473
GsaI CCCAGC 1 cut(s) 1479
GsuI CTGGAG 1 cut(s) 1190
HaeII RGCGCY 1 cut(s) 1165
HaeIII GGCC 5 cut(s) 5, 110, 257, 275, 1450
HapII CCGG 6 cut(s) 6, 68, 111, 173, 729, 1417
HgaI GACGC 1 cut(s) 234
HhaI GCGC 3 cut(s) 62, 167, 1164
Hin1I GRCGYC 3 cut(s) 32, 137, 630
Hin1II CATG 2 cut(s) 236, 701
Hin6I GCGC 3 cut(s) 60, 165, 1162
HinP1I GCGC 3 cut(s) 60, 165, 1162
HincII GTYRAC 3 cut(s) 36, 135, 141
HindII GTYRAC 3 cut(s) 36, 135, 141
HinfI GANTC 6 cut(s) 410, 461, 469, 1058, 1250, 1420
HpaII CCGG 6 cut(s) 6, 68, 111, 173, 729, 1417
HphI GGTGA 6 cut(s) 55, 160, 170, 240, 593, 1169
Hpy166II GTNNAC 6 cut(s) 36, 135, 141, 539, 824, 1177
Hpy188I TCNGA 8 cut(s) 103, 208, 222, 663, 675, 1063, 1105, 1438
Hpy188III TCNNGA 5 cut(s) 233, 519, 551, 1403, 1431
Hpy8I GTNNAC 6 cut(s) 36, 135, 141, 539, 824, 1177
HpyAV CCTTC 5 cut(s) 50, 440, 696, 838, 1110
HpyCH4III ACNGT 6 cut(s) 506, 620, 784, 913, 1215, 1312
HpyCH4IV ACGT 6 cut(s) 32, 131, 137, 433, 630, 1150
HpyCH4V TGCA 3 cut(s) 483, 1088, 1130
HpyF10VI GCNNNNNNNGC 6 cut(s) 68, 173, 1085, 1094, 1337, 1377
HpyF3I CTNAG 4 cut(s) 50, 509, 660, 921
HpySE526I ACGT 6 cut(s) 32, 131, 137, 433, 630, 1150
Hsp92I GRCGYC 3 cut(s) 32, 137, 630
Hsp92II CATG 2 cut(s) 236, 701
HspAI GCGC 3 cut(s) 60, 165, 1162
Ksp22I TGATCA 1 cut(s) 382
LmnI GCTCC 4 cut(s) 814, 941, 1273, 1304
Lsp1109I GCAGC 3 cut(s) 956, 1106, 1484
LweI GCATC 2 cut(s) 1327, 1429
MaeI CTAG 3 cut(s) 917, 1155, 1284
MaeII ACGT 6 cut(s) 32, 131, 137, 433, 630, 1150
MaeIII GTNAC 3 cut(s) 246, 1007, 1209
MboII GAAGA 7 cut(s) 28, 133, 335, 338, 407, 646, 727
MflI RGATCY 4 cut(s) 64, 905, 1082, 1387
MhlI GDGCHC 1 cut(s) 558
MluCI AATT 9 cut(s) 216, 513, 527, 546, 612, 1022, 1227, 1363, 1424
MlyI GAGTC 1 cut(s) 419
MmeI TCCRAC 4 cut(s) 444, 866, 1144, 1223
MseI TTAA 2 cut(s) 566, 615
MslI CAYNNNNRTG 1 cut(s) 1263
MspA1I CMGCKG 1 cut(s) 1475
MspI CCGG 6 cut(s) 6, 68, 111, 173, 729, 1417
Mva1269I GAATGC 2 cut(s) 485, 1270
MwoI GCNNNNNNNGC 6 cut(s) 68, 173, 1085, 1094, 1337, 1377
NdeI CATATG 1 cut(s) 1279
NheI GCTAGC 1 cut(s) 916
NlaIII CATG 2 cut(s) 236, 701
NlaIV GGNNCC 4 cut(s) 72, 177, 523, 1300
NmuCI GTSAC 3 cut(s) 246, 1007, 1209
PagI TCATGA 1 cut(s) 232
PcsI WCGNNNNNNNCGW 6 cut(s) 29, 32, 134, 137, 369, 372
PctI GAATGC 2 cut(s) 485, 1270
PfeI GAWTC 5 cut(s) 461, 469, 1058, 1250, 1420
PkrI GCNGC 4 cut(s) 760, 946, 1096, 1474
Ple19I CGATCG 1 cut(s) 81
PleI GAGTC 1 cut(s) 418
PpsI GAGTC 1 cut(s) 418
Psp1406I AACGTT 1 cut(s) 1150
PspFI CCCAGC 1 cut(s) 1475
PspN4I GGNNCC 4 cut(s) 72, 177, 523, 1300
PspPI GGNCC 1 cut(s) 338
PstNI CAGNNNCTG 3 cut(s) 1334, 1442, 1475
PsuI RGATCY 4 cut(s) 64, 905, 1082, 1387
PvuI CGATCG 1 cut(s) 81
PvuII CAGCTG 1 cut(s) 1475
RsaI GTAC 1 cut(s) 622
RsaNI GTAC 1 cut(s) 621
RseI CAYNNNNRTG 1 cut(s) 1263
SalI GTCGAC 2 cut(s) 34, 139
SaqAI TTAA 2 cut(s) 566, 615
SatI GCNGC 4 cut(s) 759, 945, 1095, 1473
Sau96I GGNCC 1 cut(s) 338
SchI GAGTC 1 cut(s) 419
SduI GDGCHC 1 cut(s) 558
SfaNI GCATC 2 cut(s) 1327, 1429
SfcI CTRYAG 2 cut(s) 1053, 1326
SgrDI CGTCGACG 2 cut(s) 34, 139
SinI GGWCC 1 cut(s) 338
SmiMI CAYNNNNRTG 1 cut(s) 1263
Sse9I AATT 9 cut(s) 216, 513, 527, 546, 612, 1022, 1227, 1363, 1424
SsiI CCGC 1 cut(s) 758
SspMI CTAG 3 cut(s) 917, 1155, 1284
StyI CCWWGG 1 cut(s) 270
TaaI ACNGT 6 cut(s) 506, 620, 784, 913, 1215, 1312
TaiI ACGT 6 cut(s) 35, 134, 140, 436, 633, 1153
TaqI TCGA 7 cut(s) 35, 77, 140, 182, 402, 983, 1225
TasI AATT 9 cut(s) 216, 513, 527, 546, 612, 1022, 1227, 1363, 1424
TatI WGTACW 1 cut(s) 620
TauI GCSGC 1 cut(s) 761
TfiI GAWTC 5 cut(s) 461, 469, 1058, 1250, 1420
Tru1I TTAA 2 cut(s) 566, 615
Tru9I TTAA 2 cut(s) 566, 615
TscAI CASTG 3 cut(s) 58, 918, 1360
TseFI GTSAC 3 cut(s) 246, 1007, 1209
TseI GCWGC 3 cut(s) 944, 1094, 1472
Tsp45I GTSAC 3 cut(s) 246, 1007, 1209
TspDTI ATGAA 7 cut(s) 221, 659, 881, 909, 980, 1016, 1445
TspGWI ACGGA 3 cut(s) 53, 158, 351
TspRI CASTG 3 cut(s) 58, 918, 1360
VpaK11BI GGWCC 1 cut(s) 338
XagI CCTNNNNNAGG 1 cut(s) 280
XapI RAATTY 3 cut(s) 513, 546, 1227
XmiI GTMKAC 3 cut(s) 35, 140, 538
XspI CTAG 3 cut(s) 917, 1155, 1284
ZraI GACGTC 3 cut(s) 33, 138, 631
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.