Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0004312

Physical Location & Seq

Genomic Coordinates Forward (+)

10048587 .. 10051081

Gene Structure 2495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g13550.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1362 bp

ATGGCAGGGAGGGCAGGCAAGCGCGCTTTTATTTGTATCTCTTCGTCTTCCGAAGAAGAAGACGACGACGGAACGGAAGACGGCGACTTTGGAGAAGAAGAAGATGACGACGATGAAGACGGTGACGGTGACGACGGCGGTTATGATGATGAGGAGGAGGAGGACGACGACAGCGATGTGAAAATTGAGGAGGGCGATGACGAGGCTCTCTGCAACAGCGTAATCCGCTCTCTCCAAGAAGGGAGTGATTTGGTTTCTTTAAATCTCAAAGAGTGCAAGGCGTATTTGCGGATGCACGGCCTCAGAATCTCCGGAACCAAAGCGGTTTGTATTCAGAGAATTGAAGAGCATTGGAGGTTGAAGGATGGAAATGGGGAAGCACTGTATCCGAGATCATCCTTCGTAATTAATTGTACAGGTGATGTCTGTAAGGGAGATGTCGTGCTCTTCACCCAGAAAGTTTATGAGAAGTTTGACAAAGTGACAAGGCATGGAAGGGTTCTAGGGAAGAGAACTGTTGCTGGCTGGGTTGTTAAAGAAAGCTATGGTGCAGCCAAACAGCAACATACTTTTACGGTTGAAGTGCTATGGAGCAGGGGAATAAAGAAGCTGTGTCCACTATTTCCTTTGCTTGTGAAGGGTCGTAATCTCTACAAATTGAGAACATTTAGACAGCGTTGGAGTAATGAAGCTGAAAGATCAAAAGTGCTTGCTGAGAAGCACCGACGAGGTGAAGCAGCAAGGCGTGTTAGAGCGAATAAAAAATCAAGGAAGTGGACTGAAAATGGAGGTGGGAAGCGTCAGAAACAATCGCATTCTACCAGACCAAATCAAATTAGAAAGAACAATGAATCAGAAAAGGGGAAGCATTTTGACAGACTCCAAAGACAGACATCCTGTGGATCTGCAAAGCATAATAGTTTCTCTCAACATCAAGCAGCCCTATCATCAAAACAGATGAGGAGTAAAGCCTCTCAACCTTTTAGGAGGCATCAAAAATCAGCACGCCCAAATATTGATAGAGTCCCCGCTCTTCATTCTCAGTCTGTCCCTCGTATTCCTCACCAATCTCAACTAGAATTTCAACACAGAAGTGCACCTTTCCAGTCTTTGGGTCATGTCATGGGCTCCACTTCAACCATGTTGAGATATCCTGTGACAACTAATTTTGATACATTTATTGTACCTGACTCACAATTTCATAGGCTCAATAACAGCAATTGTAGCCACCATGGTTATATAGATCCTGGACACAATATCACGAATCGGAATAACTTATCTGGCGTGAATGTCGGCAGGCCATTTCATCCGTATATTTCAGGAGCTGAGACATATGGGGAATGGAGGACAGGGCACAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009889 GO:0009909 GO:0009911 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAP

Protein Analysis

454

Amino Acids

51.43

Weight (kDa)

8.9

Isoelectric Point (pI)

57.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66840 AT5G66840
fragaria_vesca	FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670
malus_domestica	MD02G1168400.v1.1
prunus_persica	Prupe.7G136600_v2.0.a1 Prupe.7G136600_v2.0.a1 Prupe.7G136600_v2.0.a1
pyrus_communis	pycom02g13550 pycom15g24350 pycom15g24360
rosa_chinensis	RchiOBHm_Chr2g0104981
rosa_laevigata	RLG00000017385
rosa_multiflora	Rmu_sc0000641.1_g000032
rosa_roxburghii	Rroxscaffold_2G00138610
rosa_rugosa	Rorug02G0124300 Rorug02G0124400 Rorug02G0124500 Rorug02G0124600 Rorug02G0124700 Rorug02G0124800
rosa_samantha	Rh2AG175100 Rh2CG179700 Rh2DG181500
rosa_wichuraiana	Rw2G013760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1111
AccBSI	CCGCTC	2 cut(s)	228, 1031
AccII	CGCG	1 cut(s)	24
AccIII	TCCGGA	1 cut(s)	311
AciI	CCGC	5 cut(s)	138, 226, 289, 323, 1029
AclWI	GGATC	2 cut(s)	910, 1238
AcsI	RAATTY	1 cut(s)	1079
AfaI	GTAC	2 cut(s)	415, 1185
AfiI	CCNNNNNNNGG	1 cut(s)	1111
AgsI	TTSAA	5 cut(s)	344, 361, 581, 1085, 1137
AjnI	CCWGG	1 cut(s)	1246
AleI	CACNNNNGTG	1 cut(s)	1092
AluBI	AGCT	4 cut(s)	543, 610, 692, 1325
AluI	AGCT	4 cut(s)	543, 610, 692, 1325
Alw21I	GWGCWC	2 cut(s)	447, 1099
Alw26I	GTCTC	1 cut(s)	1322
Alw44I	GTGCAC	1 cut(s)	1095
AlwI	GGATC	2 cut(s)	910, 1238
AlwNI	CAGNNNCTG	1 cut(s)	1325
Aor13HI	TCCGGA	1 cut(s)	311
AoxI	GGCC	2 cut(s)	298, 1298
ApaLI	GTGCAC	1 cut(s)	1095
ApeKI	GCWGC	3 cut(s)	551, 737, 938
ApoI	RAATTY	1 cut(s)	1079
ArsI	GACNNNNNNTTYG	2 cut(s)	71, 103
AseI	ATTAAT	1 cut(s)	408
AspLEI	GCGC	2 cut(s)	24, 26
AsuHPI	GGTGA	6 cut(s)	134, 140, 431, 442, 743, 1055
BaeGI	GKGCMC	2 cut(s)	1099, 1356
BanII	GRGCYC	1 cut(s)	1130
BbsI	GAAGAC	4 cut(s)	39, 66, 84, 123
Bbv12I	GWGCWC	2 cut(s)	447, 1099
BbvI	GCAGC	3 cut(s)	563, 749, 950
BccI	CCATC	1 cut(s)	359
BceAI	ACGGC	3 cut(s)	97, 151, 313
BciT130I	CCWGG	1 cut(s)	1248
BciVI	GTATCC	1 cut(s)	396
BcoDI	GTCTC	1 cut(s)	1322
BfaI	CTAG	2 cut(s)	503, 1076
BfuI	GTATCC	1 cut(s)	396
BisI	GCNGC	3 cut(s)	552, 738, 939
BlsI	GCNGC	3 cut(s)	553, 739, 940
Bme1390I	CCNGG	1 cut(s)	1248
BmiI	GGNNCC	2 cut(s)	316, 1129
BmrFI	CCNGG	1 cut(s)	1248
BmsI	GCATC	2 cut(s)	282, 1000
BpiI	GAAGAC	4 cut(s)	39, 66, 84, 123
BsaJI	CCNNGG	1 cut(s)	1231
BsaWI	WCCGGW	1 cut(s)	311
BsaXI	ACNNNNNCTCC	2 cut(s)	426, 456
Bsc4I	CCNNNNNNNGG	1 cut(s)	1111
Bse1I	ACTGG	1 cut(s)	1105
BseAI	TCCGGA	1 cut(s)	311
BseBI	CCWGG	1 cut(s)	1248
BseDI	CCNNGG	1 cut(s)	1231
BseGI	GGATG	5 cut(s)	297, 370, 395, 893, 1306
BseLI	CCNNNNNNNGG	1 cut(s)	1111
BseMII	CTCAG	4 cut(s)	316, 705, 1055, 1317
BseNI	ACTGG	1 cut(s)	1105
BsePI	GCGCGC	1 cut(s)	22
BseRI	GAGGAG	5 cut(s)	167, 170, 173, 203, 976
BseSI	GKGCMC	2 cut(s)	1099, 1356
BseXI	GCAGC	3 cut(s)	563, 749, 950
BseYI	CCCAGC	1 cut(s)	525
BsgI	GTGCAG	1 cut(s)	570
Bsh1236I	CGCG	1 cut(s)	24
BshFI	GGCC	2 cut(s)	300, 1300
BsiHKAI	GWGCWC	2 cut(s)	447, 1099
BsiSI	CCGG	1 cut(s)	312
BslFI	GGGAC	2 cut(s)	1010, 1034
BslI	CCNNNNNNNGG	1 cut(s)	1111
BsmAI	GTCTC	1 cut(s)	1322
BsmFI	GGGAC	2 cut(s)	1010, 1034
BsmI	GAATGC	1 cut(s)	814
BsnI	GGCC	2 cut(s)	300, 1300
Bsp1286I	GDGCHC	4 cut(s)	447, 1099, 1130, 1356
Bsp13I	TCCGGA	1 cut(s)	311
Bsp1407I	TGTACA	1 cut(s)	413
Bsp143I	GATC	4 cut(s)	392, 698, 902, 1243
Bsp19I	CCATGG	1 cut(s)	1231
BspACI	CCGC	5 cut(s)	138, 226, 289, 323, 1029
BspANI	GGCC	2 cut(s)	300, 1300
BspCNI	CTCAG	4 cut(s)	315, 706, 1054, 1318
BspEI	TCCGGA	1 cut(s)	311
BspFNI	CGCG	1 cut(s)	24
BspLI	GGNNCC	2 cut(s)	316, 1129
BspPI	GGATC	2 cut(s)	910, 1238
BspQI	GCTCTTC	3 cut(s)	339, 452, 1038
BsrBI	CCGCTC	2 cut(s)	228, 1031
BsrGI	TGTACA	1 cut(s)	413
BsrI	ACTGG	1 cut(s)	1105
BssECI	CCNNGG	1 cut(s)	1231
BssHII	GCGCGC	1 cut(s)	22
BssMI	GATC	4 cut(s)	392, 698, 902, 1243
BssT1I	CCWWGG	1 cut(s)	1231
Bst2UI	CCWGG	1 cut(s)	1248
Bst4CI	ACNGT	5 cut(s)	122, 128, 384, 517, 577
Bst6I	CTCTTC	5 cut(s)	46, 339, 452, 503, 1038
BstAUI	TGTACA	1 cut(s)	413
BstC8I	GCNNGC	7 cut(s)	16, 20, 24, 523, 711, 1006, 1298
BstDEI	CTNAG	4 cut(s)	302, 714, 1041, 1326
BstDSI	CCRYGG	1 cut(s)	1231
BstF5I	GGATG	5 cut(s)	297, 370, 395, 893, 1306
BstFNI	CGCG	1 cut(s)	24
BstHHI	GCGC	2 cut(s)	24, 26
BstKTI	GATC	4 cut(s)	395, 701, 905, 1246
BstMAI	GTCTC	1 cut(s)	1322
BstMBI	GATC	4 cut(s)	392, 698, 902, 1243
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 225, 1224
BstNI	CCWGG	1 cut(s)	1248
BstSCI	CCNGG	1 cut(s)	1246
BstSLI	GKGCMC	2 cut(s)	1099, 1356
BstUI	CGCG	1 cut(s)	24
BstV1I	GCAGC	3 cut(s)	563, 749, 950
BstV2I	GAAGAC	4 cut(s)	39, 66, 84, 123
BstX2I	RGATCY	2 cut(s)	902, 1243
BstYI	RGATCY	2 cut(s)	902, 1243
BsuI	GTATCC	1 cut(s)	396
BsuRI	GGCC	2 cut(s)	300, 1300
BtgI	CCRYGG	1 cut(s)	1231
BtgZI	GCGATG	2 cut(s)	189, 210
BtsCI	GGATG	5 cut(s)	297, 370, 395, 893, 1306
BtsIMutI	CAGTG	1 cut(s)	380
Cac8I	GCNNGC	7 cut(s)	16, 20, 24, 523, 711, 1006, 1298
CaiI	CAGNNNCTG	1 cut(s)	1325
CfoI	GCGC	2 cut(s)	24, 26
CseI	GACGC	1 cut(s)	788
Csp6I	GTAC	2 cut(s)	414, 1184
CviAII	CATG	5 cut(s)	491, 1118, 1123, 1141, 1232
CviQI	GTAC	2 cut(s)	414, 1184
DdeI	CTNAG	4 cut(s)	302, 714, 1041, 1326
DpnI	GATC	4 cut(s)	394, 700, 904, 1245
DpnII	GATC	4 cut(s)	392, 698, 902, 1243
DraI	TTTAAA	1 cut(s)	261
Eam1104I	CTCTTC	5 cut(s)	46, 339, 452, 503, 1038
EarI	CTCTTC	5 cut(s)	46, 339, 452, 503, 1038
Eco130I	CCWWGG	1 cut(s)	1231
Eco24I	GRGCYC	1 cut(s)	1130
Eco32I	GATATC	1 cut(s)	1151
EcoRII	CCWGG	1 cut(s)	1246
EcoRV	GATATC	1 cut(s)	1151
EcoT14I	CCWWGG	1 cut(s)	1231
EcoT38I	GRGCYC	1 cut(s)	1130
ErhI	CCWWGG	1 cut(s)	1231
FaeI	CATG	5 cut(s)	494, 1121, 1126, 1144, 1235
FalI	AAGNNNNNCTT	2 cut(s)	1084, 1116
FaqI	GGGAC	2 cut(s)	1010, 1034
FatI	CATG	5 cut(s)	490, 1117, 1122, 1140, 1231
FauI	CCCGC	1 cut(s)	1036
FauNDI	CATATG	1 cut(s)	1333
Fnu4HI	GCNGC	3 cut(s)	552, 738, 939
FokI	GGATG	5 cut(s)	304, 377, 382, 880, 1293
FriOI	GRGCYC	1 cut(s)	1130
Fsp4HI	GCNGC	3 cut(s)	552, 738, 939
FspBI	CTAG	2 cut(s)	503, 1076
GlaI	GCGC	2 cut(s)	23, 25
GluI	GCNGC	3 cut(s)	552, 738, 939
GsaI	CCCAGC	1 cut(s)	529
HaeIII	GGCC	2 cut(s)	300, 1300
HapII	CCGG	1 cut(s)	312
HgaI	GACGC	1 cut(s)	788
HhaI	GCGC	2 cut(s)	24, 26
Hin1II	CATG	5 cut(s)	494, 1121, 1126, 1144, 1235
Hin6I	GCGC	2 cut(s)	22, 24
HinP1I	GCGC	2 cut(s)	22, 24
HinfI	GANTC	6 cut(s)	306, 851, 879, 1023, 1190, 1264
HpaII	CCGG	1 cut(s)	312
HphI	GGTGA	6 cut(s)	134, 140, 431, 442, 743, 1055
Hpy166II	GTNNAC	3 cut(s)	617, 777, 1097
Hpy188I	TCNGA	7 cut(s)	52, 305, 336, 390, 804, 856, 1269
Hpy188III	TCNNGA	3 cut(s)	312, 1261, 1320
Hpy8I	GTNNAC	3 cut(s)	617, 777, 1097
Hpy99I	CGWCG	6 cut(s)	68, 71, 113, 137, 170, 729
HpyAV	CCTTC	5 cut(s)	233, 355, 409, 489, 631
HpyCH4III	ACNGT	5 cut(s)	122, 128, 384, 517, 577
HpyCH4V	TGCA	6 cut(s)	213, 276, 295, 551, 908, 1097
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 225, 1224
HpyF3I	CTNAG	4 cut(s)	302, 714, 1041, 1326
Hsp92II	CATG	5 cut(s)	494, 1121, 1126, 1144, 1235
HspAI	GCGC	2 cut(s)	22, 24
Kpn2I	TCCGGA	1 cut(s)	311
Kzo9I	GATC	4 cut(s)	392, 698, 902, 1243
LguI	GCTCTTC	3 cut(s)	339, 452, 1038
LmnI	GCTCC	3 cut(s)	591, 1133, 1322
Lsp1109I	GCAGC	3 cut(s)	563, 749, 950
LweI	GCATC	2 cut(s)	282, 1000
MaeI	CTAG	2 cut(s)	503, 1076
MaeIII	GTNAC	4 cut(s)	122, 128, 481, 1156
MalI	GATC	4 cut(s)	394, 700, 904, 1245
MbiI	CCGCTC	2 cut(s)	228, 1031
MboI	GATC	4 cut(s)	392, 698, 902, 1243
MfeI	CAATTG	1 cut(s)	1219
MflI	RGATCY	2 cut(s)	902, 1243
MhlI	GDGCHC	4 cut(s)	447, 1099, 1130, 1356
MlyI	GAGTC	3 cut(s)	873, 1032, 1184
MmeI	TCCRAC	1 cut(s)	659
MroI	TCCGGA	1 cut(s)	311
MseI	TTAA	3 cut(s)	260, 408, 534
MslI	CAYNNNNRTG	1 cut(s)	1092
MspI	CCGG	1 cut(s)	312
MspR9I	CCNGG	1 cut(s)	1248
MunI	CAATTG	1 cut(s)	1219
Mva1269I	GAATGC	1 cut(s)	814
MvaI	CCWGG	1 cut(s)	1248
MvnI	CGCG	1 cut(s)	24
MwoI	GCNNNNNNNGC	3 cut(s)	11, 225, 1224
NcoI	CCATGG	1 cut(s)	1231
NdeI	CATATG	1 cut(s)	1333
NdeII	GATC	4 cut(s)	392, 698, 902, 1243
NlaIII	CATG	5 cut(s)	494, 1121, 1126, 1144, 1235
NlaIV	GGNNCC	2 cut(s)	316, 1129
NmuCI	GTSAC	4 cut(s)	122, 128, 481, 1156
OliI	CACNNNNGTG	1 cut(s)	1092
PauI	GCGCGC	1 cut(s)	22
PciSI	GCTCTTC	3 cut(s)	339, 452, 1038
PcsI	WCGNNNNNNNCGW	1 cut(s)	171
PctI	GAATGC	1 cut(s)	814
PfeI	GAWTC	3 cut(s)	306, 851, 1264
PflMI	CCANNNNNTGG	1 cut(s)	1111
PfoI	TCCNGGA	1 cut(s)	1246
PkrI	GCNGC	3 cut(s)	553, 739, 940
PleI	GAGTC	3 cut(s)	873, 1031, 1184
PpsI	GAGTC	3 cut(s)	873, 1031, 1184
PshBI	ATTAAT	1 cut(s)	408
Psp6I	CCWGG	1 cut(s)	1246
PspFI	CCCAGC	1 cut(s)	525
PspGI	CCWGG	1 cut(s)	1246
PspN4I	GGNNCC	2 cut(s)	316, 1129
PstNI	CAGNNNCTG	1 cut(s)	1325
PsuI	RGATCY	2 cut(s)	902, 1243
PteI	GCGCGC	1 cut(s)	22
RsaI	GTAC	2 cut(s)	415, 1185
RsaNI	GTAC	2 cut(s)	414, 1184
RseI	CAYNNNNRTG	1 cut(s)	1092
SapI	GCTCTTC	3 cut(s)	339, 452, 1038
SaqAI	TTAA	3 cut(s)	260, 408, 534
SatI	GCNGC	3 cut(s)	552, 738, 939
Sau3AI	GATC	4 cut(s)	392, 698, 902, 1243
SchI	GAGTC	3 cut(s)	873, 1032, 1184
ScrFI	CCNGG	1 cut(s)	1248
SduI	GDGCHC	4 cut(s)	447, 1099, 1130, 1356
SfaNI	GCATC	2 cut(s)	282, 1000
SmiMI	CAYNNNNRTG	1 cut(s)	1092
SsiI	CCGC	5 cut(s)	138, 226, 289, 323, 1029
SspI	AATATT	1 cut(s)	1015
SspMI	CTAG	2 cut(s)	503, 1076
StyD4I	CCNGG	1 cut(s)	1246
StyI	CCWWGG	1 cut(s)	1231
TaaI	ACNGT	5 cut(s)	122, 128, 384, 517, 577
TatI	WGTACW	1 cut(s)	413
TfiI	GAWTC	3 cut(s)	306, 851, 1264
Tru1I	TTAA	3 cut(s)	260, 408, 534
Tru9I	TTAA	3 cut(s)	260, 408, 534
TscAI	CASTG	1 cut(s)	387
TseFI	GTSAC	4 cut(s)	122, 128, 481, 1156
TseI	GCWGC	3 cut(s)	551, 737, 938
Tsp45I	GTSAC	4 cut(s)	122, 128, 481, 1156
TspDTI	ATGAA	6 cut(s)	129, 702, 864, 1025, 1190, 1295
TspGWI	ACGGA	3 cut(s)	84, 89, 1299
TspRI	CASTG	1 cut(s)	387
Van91I	CCANNNNNTGG	1 cut(s)	1111
VneI	GTGCAC	1 cut(s)	1095
VspI	ATTAAT	1 cut(s)	408
XapI	RAATTY	1 cut(s)	1079
XspI	CTAG	2 cut(s)	503, 1076

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.