Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0004312

Physical Location & Seq

Genomic Coordinates Forward (+)

16687774 .. 16696495

Gene Structure 8722 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG175100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGGCCGCGAGGGAAGGTAAGCCCGCCTTTATTTGTATCTCTTCGTCTGAAGAAGAAGACGACGACGGACCAGAGAGCGACGACTATGATTACGACGAGAACCACGAGGACGACGACGATGATCAAATGGAGGAAGAGGTCGATGACGAGTCTCTCTCCAACAAAGTCATACGTTTCCTCAAAGAAGGGAGTGATTTAGATTCTTTGAATCTCAAAGAATGCAAAGCCTATTTGCGAAAGCACGGTCTTAGAATTTCAGGAACCAAATTGATTTGTATACAAAGAATTCAAGAGCACCATAGATTAAAAGATGGAAATGGTGAAGCATTGTATCCCAGATCATCCTTTGTGATTAACTGTACAGGTGACGTCTGTAAGGGAGATGTCGTCCTCTTCACTCAGAAAGTTCATCAGAAGTTTGATAAGATGGCAAGGCATGGAAGGGTTCTTGGGAAGAGAGTTGTTGCCGGTAGGGTTGTCAAAGAAAGCTATGGTGCGGCTAAACAACAGCATACTTTTACGGTTGAAGTGTTATGGAGTAGGGGAATAAAGGAGCTGTGTCCACTATTTCCTCTGCTTGTGAAGGGTCGCAATCTCTACAAAATGAAAACTTTTAGACAGCGTTGGAGTAATGAAGCTGAAAGATCCACAGTGCTAGCTGAGAAGCACAGACGAGGTGGAGCAGCAAGACTTGTGAGAGCGATGAAAAAATCAAAGAAATCGACTGCCAATGGAGGTATGAAGTGTCACAACCAATCCCAATTTTCTAAACCAAACAACAAGCGAAAGACTACAGAATCAGAAAGGGGGAAGCACGAAAGATCTGCAAGAGCAGCATCTTCAGAACAGATGAGTTTCCAACAAAATGCAAGGAGTAAAACCTCTCAACGTTCTAGTAAGCGCCATAAAGCAGTTCACCCTAATATAGATAGAGTTCCAACTCCCCAGTCACAGTCTAATCCTCGAATTTGTCATCCATCTCAAATAGAATCTCAACACAGGAATGCTCCTTTCCCATATGCTAGTCATCCCATAGGCTCCACTTCAACCGTGTTGAGATATCCTACAGCAACTGATGCTACTACCAGCTTCACTGACAGAAATTATAGCCACTATGGCTACATAGATCCTGTCTATAATCGGGAGTTGAACAACTGGAATCAATTATCAGGATCGGATGCTGGCAGGCCATTTCATCTCTATATGTCAGCGGCTGGGAACTATGGACATAGGGGGTATAGAGATCTTTCTTTTCTAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009889 GO:0009909 GO:0009911 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAP

Protein Analysis

420

Amino Acids

47.78

Weight (kDa)

9.34

Isoelectric Point (pI)

56.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAP	PF02037	65 - 99	2.2e-06	SAP domain
DUF7699	PF24766	125 - 209	2.8e-40	Domain of unknown function (DUF7699)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66840 AT5G66840
fragaria_vesca	FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670
malus_domestica	MD02G1168400.v1.1
prunus_persica	Prupe.7G136600_v2.0.a1 Prupe.7G136600_v2.0.a1 Prupe.7G136600_v2.0.a1
pyrus_communis	pycom02g13550 pycom15g24350 pycom15g24360
rosa_chinensis	RchiOBHm_Chr2g0104981
rosa_laevigata	RLG00000017385
rosa_multiflora	Rmu_sc0000641.1_g000032
rosa_roxburghii	Rroxscaffold_2G00138610
rosa_rugosa	Rorug02G0124300 Rorug02G0124400 Rorug02G0124500 Rorug02G0124600 Rorug02G0124700 Rorug02G0124800
rosa_samantha	Rh2AG175100 Rh2CG179700 Rh2DG181500
rosa_wichuraiana	Rw2G013760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	372
AccI	GTMKAC	1 cut(s)	277
AccII	CGCG	1 cut(s)	8
AciI	CCGC	4 cut(s)	6, 24, 497, 1211
AclI	AACGTT	1 cut(s)	889
AclWI	GGATC	3 cut(s)	639, 1121, 1180
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	3 cut(s)	252, 285, 966
AcuI	CTGAAG	2 cut(s)	69, 825
AcyI	GRCGYC	1 cut(s)	369
AfaI	GTAC	1 cut(s)	361
AgsI	TTSAA	5 cut(s)	208, 290, 527, 1047, 1150
AluBI	AGCT	5 cut(s)	489, 556, 638, 659, 1089
AluI	AGCT	5 cut(s)	489, 556, 638, 659, 1089
Alw21I	GWGCWC	1 cut(s)	297
Alw26I	GTCTC	1 cut(s)	156
AlwI	GGATC	3 cut(s)	639, 1121, 1180
AlwNI	CAGNNNCTG	2 cut(s)	1073, 1214
AoxI	GGCC	2 cut(s)	3, 1187
ApeKI	GCWGC	2 cut(s)	683, 833
ApoI	RAATTY	3 cut(s)	252, 285, 966
ArsI	GACNNNNNNTTYG	2 cut(s)	229, 261
AspLEI	GCGC	1 cut(s)	903
AspS9I	GGNCC	1 cut(s)	68
AsuHPI	GGTGA	3 cut(s)	332, 377, 908
AsuNHI	GCTAGC	1 cut(s)	655
AvaII	GGWCC	1 cut(s)	68
BauI	CACGAG	1 cut(s)	104
BbsI	GAAGAC	1 cut(s)	63
Bbv12I	GWGCWC	1 cut(s)	297
BbvI	GCAGC	2 cut(s)	695, 845
BccI	CCATC	3 cut(s)	305, 421, 985
BcgI	CGANNNNNNTGC	2 cut(s)	806, 840
BciVI	GTATCC	1 cut(s)	342
BclI	TGATCA	1 cut(s)	121
BcoDI	GTCTC	1 cut(s)	156
BfaI	CTAG	3 cut(s)	656, 894, 1023
BfmI	CTRYAG	2 cut(s)	792, 1065
BfoI	RGCGCY	1 cut(s)	904
BfuI	GTATCC	1 cut(s)	342
BglI	GCCNNNNNGGC	1 cut(s)	1116
BglII	AGATCT	2 cut(s)	821, 1243
BisI	GCNGC	5 cut(s)	6, 498, 684, 834, 1212
BlsI	GCNGC	5 cut(s)	7, 499, 685, 835, 1213
Bme18I	GGWCC	1 cut(s)	68
BmgT120I	GGNCC	1 cut(s)	68
BmiI	GGNNCC	2 cut(s)	262, 1039
BmrI	ACTGGG	1 cut(s)	940
BmsI	GCATC	3 cut(s)	845, 1066, 1168
BmtI	GCTAGC	1 cut(s)	659
BmuI	ACTGGG	1 cut(s)	940
BpiI	GAAGAC	1 cut(s)	63
BplI	GAGNNNNNCTC	2 cut(s)	140, 172
BsaHI	GRCGYC	1 cut(s)	369
BsaXI	ACNNNNNCTCC	2 cut(s)	372, 402
Bse118I	RCCGGY	1 cut(s)	467
Bse1I	ACTGG	2 cut(s)	946, 1160
BseGI	GGATG	4 cut(s)	341, 973, 1027, 1183
BseMII	CTCAG	2 cut(s)	413, 651
BseNI	ACTGG	2 cut(s)	946, 1160
BseXI	GCAGC	2 cut(s)	695, 845
BseYI	CCCAGC	1 cut(s)	1214
Bsh1236I	CGCG	1 cut(s)	8
BshFI	GGCC	2 cut(s)	5, 1189
BsiHKAI	GWGCWC	1 cut(s)	297
BsiSI	CCGG	1 cut(s)	468
BsmAI	GTCTC	1 cut(s)	156
BsmI	GAATGC	2 cut(s)	224, 1009
BsnI	GGCC	2 cut(s)	5, 1189
Bsp1286I	GDGCHC	1 cut(s)	297
Bsp1407I	TGTACA	1 cut(s)	359
Bsp143I	GATC	7 cut(s)	121, 338, 644, 821, 1126, 1172, 1243
BspACI	CCGC	4 cut(s)	6, 24, 497, 1211
BspANI	GGCC	2 cut(s)	5, 1189
BspCNI	CTCAG	2 cut(s)	412, 652
BspFNI	CGCG	1 cut(s)	8
BspLI	GGNNCC	2 cut(s)	262, 1039
BspOI	GCTAGC	1 cut(s)	659
BspPI	GGATC	3 cut(s)	639, 1121, 1180
BsrFI	RCCGGY	1 cut(s)	467
BsrGI	TGTACA	1 cut(s)	359
BsrI	ACTGG	2 cut(s)	946, 1160
BssAI	RCCGGY	1 cut(s)	467
BssMI	GATC	7 cut(s)	121, 338, 644, 821, 1126, 1172, 1243
BssNAI	GTATAC	1 cut(s)	278
BssNI	GRCGYC	1 cut(s)	369
BssSI	CACGAG	1 cut(s)	104
Bst1107I	GTATAC	1 cut(s)	278
Bst2BI	CACGAG	1 cut(s)	104
Bst4CI	ACNGT	6 cut(s)	245, 359, 523, 652, 954, 1051
Bst6I	CTCTTC	4 cut(s)	46, 129, 398, 449
BstACI	GRCGYC	1 cut(s)	369
BstAPI	GCANNNNNTGC	1 cut(s)	1076
BstAUI	TGTACA	1 cut(s)	359
BstC8I	GCNNGC	4 cut(s)	24, 657, 1183, 1187
BstDEI	CTNAG	3 cut(s)	248, 399, 660
BstF5I	GGATG	4 cut(s)	341, 973, 1027, 1183
BstFNI	CGCG	1 cut(s)	8
BstH2I	RGCGCY	1 cut(s)	904
BstHHI	GCGC	1 cut(s)	903
BstKTI	GATC	7 cut(s)	124, 341, 647, 824, 1129, 1175, 1246
BstMAI	GTCTC	1 cut(s)	156
BstMBI	GATC	7 cut(s)	121, 338, 644, 821, 1126, 1172, 1243
BstMWI	GCNNNNNNNGC	3 cut(s)	833, 1076, 1116
BstSFI	CTRYAG	2 cut(s)	792, 1065
BstUI	CGCG	1 cut(s)	8
BstV1I	GCAGC	2 cut(s)	695, 845
BstV2I	GAAGAC	1 cut(s)	63
BstX2I	RGATCY	4 cut(s)	644, 821, 1126, 1243
BstYI	RGATCY	4 cut(s)	644, 821, 1126, 1243
BstZ17I	GTATAC	1 cut(s)	278
BsuI	GTATCC	1 cut(s)	342
BsuRI	GGCC	2 cut(s)	5, 1189
BtgZI	GCGATG	1 cut(s)	716
BtsCI	GGATG	4 cut(s)	341, 973, 1027, 1183
BtsIMutI	CAGTG	2 cut(s)	657, 1092
Cac8I	GCNNGC	4 cut(s)	24, 657, 1183, 1187
CaiI	CAGNNNCTG	2 cut(s)	1073, 1214
CfoI	GCGC	1 cut(s)	903
Cfr10I	RCCGGY	1 cut(s)	467
Cfr13I	GGNCC	1 cut(s)	68
Csp6I	GTAC	1 cut(s)	360
CviAII	CATG	1 cut(s)	437
CviQI	GTAC	1 cut(s)	360
DdeI	CTNAG	3 cut(s)	248, 399, 660
DpnI	GATC	7 cut(s)	123, 340, 646, 823, 1128, 1174, 1245
DpnII	GATC	7 cut(s)	121, 338, 644, 821, 1126, 1172, 1243
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	4 cut(s)	46, 129, 398, 449
EarI	CTCTTC	4 cut(s)	46, 129, 398, 449
Eco32I	GATATC	1 cut(s)	1061
Eco47I	GGWCC	1 cut(s)	68
Eco57I	CTGAAG	2 cut(s)	69, 825
EcoRI	GAATTC	1 cut(s)	285
EcoRV	GATATC	1 cut(s)	1061
FaeI	CATG	1 cut(s)	440
FalI	AAGNNNNNCTT	2 cut(s)	11, 43
FatI	CATG	1 cut(s)	436
FauI	CCCGC	1 cut(s)	31
FauNDI	CATATG	1 cut(s)	1018
FbaI	TGATCA	1 cut(s)	121
FblI	GTMKAC	1 cut(s)	277
Fnu4HI	GCNGC	5 cut(s)	6, 498, 684, 834, 1212
FokI	GGATG	4 cut(s)	328, 960, 1014, 1190
Fsp4HI	GCNGC	5 cut(s)	6, 498, 684, 834, 1212
FspBI	CTAG	3 cut(s)	656, 894, 1023
GlaI	GCGC	1 cut(s)	902
GluI	GCNGC	5 cut(s)	6, 498, 684, 834, 1212
GsaI	CCCAGC	1 cut(s)	1218
HaeII	RGCGCY	1 cut(s)	904
HaeIII	GGCC	2 cut(s)	5, 1189
HapII	CCGG	1 cut(s)	468
HhaI	GCGC	1 cut(s)	903
Hin1I	GRCGYC	1 cut(s)	369
Hin1II	CATG	1 cut(s)	440
Hin6I	GCGC	1 cut(s)	901
HinP1I	GCGC	1 cut(s)	901
HinfI	GANTC	6 cut(s)	149, 200, 208, 797, 989, 1159
HpaII	CCGG	1 cut(s)	468
HphI	GGTGA	3 cut(s)	332, 377, 908
Hpy166II	GTNNAC	3 cut(s)	278, 563, 916
Hpy188I	TCNGA	6 cut(s)	49, 402, 414, 802, 844, 1177
Hpy188III	TCNNGA	4 cut(s)	258, 290, 1142, 1170
Hpy8I	GTNNAC	3 cut(s)	278, 563, 916
Hpy99I	CGWCG	6 cut(s)	65, 68, 83, 98, 116, 119
HpyAV	CCTTC	4 cut(s)	8, 179, 435, 577
HpyCH4III	ACNGT	6 cut(s)	245, 359, 523, 652, 954, 1051
HpyCH4IV	ACGT	3 cut(s)	172, 369, 889
HpyCH4V	TGCA	3 cut(s)	222, 827, 869
HpyF10VI	GCNNNNNNNGC	3 cut(s)	833, 1076, 1116
HpyF3I	CTNAG	3 cut(s)	248, 399, 660
HpySE526I	ACGT	3 cut(s)	172, 369, 889
Hsp92I	GRCGYC	1 cut(s)	369
Hsp92II	CATG	1 cut(s)	440
HspAI	GCGC	1 cut(s)	901
Ksp22I	TGATCA	1 cut(s)	121
Kzo9I	GATC	7 cut(s)	121, 338, 644, 821, 1126, 1172, 1243
LmnI	GCTCC	4 cut(s)	553, 680, 1012, 1043
Lsp1109I	GCAGC	2 cut(s)	695, 845
LweI	GCATC	3 cut(s)	845, 1066, 1168
MaeI	CTAG	3 cut(s)	656, 894, 1023
MaeII	ACGT	3 cut(s)	172, 369, 889
MaeIII	GTNAC	3 cut(s)	365, 746, 948
MalI	GATC	7 cut(s)	123, 340, 646, 823, 1128, 1174, 1245
MboI	GATC	7 cut(s)	121, 338, 644, 821, 1126, 1172, 1243
MboII	GAAGA	8 cut(s)	33, 62, 65, 68, 146, 385, 466, 831
MflI	RGATCY	4 cut(s)	644, 821, 1126, 1243
MhlI	GDGCHC	1 cut(s)	297
MluCI	AATT	8 cut(s)	252, 266, 285, 761, 966, 1102, 1163, 1257
MlyI	GAGTC	1 cut(s)	158
MmeI	TCCRAC	4 cut(s)	183, 605, 883, 962
MseI	TTAA	2 cut(s)	305, 354
MslI	CAYNNNNRTG	1 cut(s)	1002
MspA1I	CMGCKG	1 cut(s)	1211
MspI	CCGG	1 cut(s)	468
Mva1269I	GAATGC	2 cut(s)	224, 1009
MvnI	CGCG	1 cut(s)	8
MwoI	GCNNNNNNNGC	3 cut(s)	833, 1076, 1116
NdeI	CATATG	1 cut(s)	1018
NdeII	GATC	7 cut(s)	121, 338, 644, 821, 1126, 1172, 1243
NheI	GCTAGC	1 cut(s)	655
NlaIII	CATG	1 cut(s)	440
NlaIV	GGNNCC	2 cut(s)	262, 1039
NmuCI	GTSAC	3 cut(s)	365, 746, 948
PcsI	WCGNNNNNNNCGW	2 cut(s)	102, 111
PctI	GAATGC	2 cut(s)	224, 1009
PfeI	GAWTC	5 cut(s)	200, 208, 797, 989, 1159
PkrI	GCNGC	5 cut(s)	7, 499, 685, 835, 1213
PleI	GAGTC	1 cut(s)	157
PpsI	GAGTC	1 cut(s)	157
Psp1406I	AACGTT	1 cut(s)	889
PspFI	CCCAGC	1 cut(s)	1214
PspN4I	GGNNCC	2 cut(s)	262, 1039
PspPI	GGNCC	1 cut(s)	68
PstNI	CAGNNNCTG	2 cut(s)	1073, 1214
PsuI	RGATCY	4 cut(s)	644, 821, 1126, 1243
RsaI	GTAC	1 cut(s)	361
RsaNI	GTAC	1 cut(s)	360
RseI	CAYNNNNRTG	1 cut(s)	1002
SaqAI	TTAA	2 cut(s)	305, 354
SatI	GCNGC	5 cut(s)	6, 498, 684, 834, 1212
Sau3AI	GATC	7 cut(s)	121, 338, 644, 821, 1126, 1172, 1243
Sau96I	GGNCC	1 cut(s)	68
SchI	GAGTC	1 cut(s)	158
SduI	GDGCHC	1 cut(s)	297
SfaNI	GCATC	3 cut(s)	845, 1066, 1168
SfcI	CTRYAG	2 cut(s)	792, 1065
SinI	GGWCC	1 cut(s)	68
SmiMI	CAYNNNNRTG	1 cut(s)	1002
Sse9I	AATT	8 cut(s)	252, 266, 285, 761, 966, 1102, 1163, 1257
SsiI	CCGC	4 cut(s)	6, 24, 497, 1211
SspMI	CTAG	3 cut(s)	656, 894, 1023
TaaI	ACNGT	6 cut(s)	245, 359, 523, 652, 954, 1051
TaiI	ACGT	3 cut(s)	175, 372, 892
TaqI	TCGA	3 cut(s)	141, 722, 964
TasI	AATT	8 cut(s)	252, 266, 285, 761, 966, 1102, 1163, 1257
TatI	WGTACW	1 cut(s)	359
TauI	GCSGC	3 cut(s)	8, 500, 1214
TfiI	GAWTC	5 cut(s)	200, 208, 797, 989, 1159
Tru1I	TTAA	2 cut(s)	305, 354
Tru9I	TTAA	2 cut(s)	305, 354
TscAI	CASTG	2 cut(s)	657, 1099
TseFI	GTSAC	3 cut(s)	365, 746, 948
TseI	GCWGC	2 cut(s)	683, 833
Tsp45I	GTSAC	3 cut(s)	365, 746, 948
TspDTI	ATGAA	6 cut(s)	398, 620, 648, 719, 755, 1184
TspGWI	ACGGA	1 cut(s)	81
TspRI	CASTG	2 cut(s)	657, 1099
VpaK11BI	GGWCC	1 cut(s)	68
XapI	RAATTY	3 cut(s)	252, 285, 966
XmiI	GTMKAC	1 cut(s)	277
XspI	CTAG	3 cut(s)	656, 894, 1023
ZraI	GACGTC	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.