Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0004312

Physical Location & Seq

Genomic Coordinates Forward (+)

16008264 .. 16011564

Gene Structure 3301 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG181500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGCCGCGAGGGAAGGTAAGCCCGCCTTTATTTGTATCTCTTCGTCTGAAGAAGAAGACGACGACGGACCAGAGAGCGACGACTATGATTACGACGAGAACCACGAGGACGACGACGATGATCAAATGGAGGAAGAGGTCGATGACGAGTCTCTCTCCAACAAAGTCATACGTTTCCTCAAAGAAGGGAGTGATTTAGATTCTTTGAATCTCAAAGAATGCAAAGCCTATTTGCGAAAGCACGGTCTTAGAATTTCAGGAACCAAATTGATTTGTATACAAAGAATTCAAGAGCACCATAGATTAAAAGATGGAAATGGTGAAGCATTGTATCCCAGATCATCCTTTGTGATTAACTGTACAGGTGACGTCTGTAAGGGAGATGTCGTCCTCTTCACTCAGAAAGTTCATCAGAAGTTTGATAAGATGGCAAGGCATGGAAGGGTTCTTGGGAAGAGAGTTGTTGCCGGTAGGGTTGTCAAAGAAAGCTATGGTGCGGCTAAACAACAGCATACTTTTACGGTTGAAGTGTTATGGAGTAGGGGAATAAAGGAGCTGTGTCCACTATTTCCTCTGCTTGTGAAGGGTCGCAATCTCTACAAAATGAAAACTTTTAGACAGCGTTGGAGTAATGAAGCTGAAAGATCCACAGTGCTAGCTGAGAAGCACAGACGAGGTGGAGCAGCAAGACTTGTGAGAGCGATGAAAAAATCAAAGAAATCGACTGCCAATGGAGGTATTGGGAGGGAAGGAAGCAGTTTTACTGCATGTTACTTCTTTTACAGCATCTATCTTACTCTTGTTTCAGATGCGAGAGATATTATTTTGTGTATTTTGTTCTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009889 GO:0009909 GO:0009911 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAP

Protein Analysis

281

Amino Acids

31.93

Weight (kDa)

8.04

Isoelectric Point (pI)

44.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAP	PF02037	65 - 99	1.3e-06	SAP domain
DUF7699	PF24766	125 - 209	1.3e-40	Domain of unknown function (DUF7699)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66840 AT5G66840
fragaria_vesca	FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670
malus_domestica	MD02G1168400.v1.1
prunus_persica	Prupe.7G136600_v2.0.a1 Prupe.7G136600_v2.0.a1 Prupe.7G136600_v2.0.a1
pyrus_communis	pycom02g13550 pycom15g24350 pycom15g24360
rosa_chinensis	RchiOBHm_Chr2g0104981
rosa_laevigata	RLG00000017385
rosa_multiflora	Rmu_sc0000641.1_g000032
rosa_roxburghii	Rroxscaffold_2G00138610
rosa_rugosa	Rorug02G0124300 Rorug02G0124400 Rorug02G0124500 Rorug02G0124600 Rorug02G0124700 Rorug02G0124800
rosa_samantha	Rh2AG175100 Rh2CG179700 Rh2DG181500
rosa_wichuraiana	Rw2G013760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	372
AccI	GTMKAC	1 cut(s)	277
AccII	CGCG	1 cut(s)	8
AciI	CCGC	3 cut(s)	6, 24, 497
AclWI	GGATC	1 cut(s)	639
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	252, 285
AcuI	CTGAAG	1 cut(s)	69
AcyI	GRCGYC	1 cut(s)	369
AfaI	GTAC	1 cut(s)	361
AgsI	TTSAA	3 cut(s)	208, 290, 527
AluBI	AGCT	4 cut(s)	489, 556, 638, 659
AluI	AGCT	4 cut(s)	489, 556, 638, 659
Alw21I	GWGCWC	1 cut(s)	297
Alw26I	GTCTC	1 cut(s)	156
AlwI	GGATC	1 cut(s)	639
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	683
ApoI	RAATTY	2 cut(s)	252, 285
ArsI	GACNNNNNNTTYG	2 cut(s)	229, 261
AspS9I	GGNCC	1 cut(s)	68
AsuHPI	GGTGA	2 cut(s)	332, 377
AsuNHI	GCTAGC	1 cut(s)	655
AvaII	GGWCC	1 cut(s)	68
BarI	GAAGNNNNNNTAC	2 cut(s)	745, 777
BauI	CACGAG	1 cut(s)	104
BbsI	GAAGAC	1 cut(s)	63
Bbv12I	GWGCWC	1 cut(s)	297
BbvI	GCAGC	1 cut(s)	695
BccI	CCATC	2 cut(s)	305, 421
BciVI	GTATCC	1 cut(s)	342
BclI	TGATCA	1 cut(s)	121
BcoDI	GTCTC	1 cut(s)	156
BfaI	CTAG	2 cut(s)	656, 844
BfuI	GTATCC	1 cut(s)	342
BisI	GCNGC	3 cut(s)	6, 498, 684
BlsI	GCNGC	3 cut(s)	7, 499, 685
Bme18I	GGWCC	1 cut(s)	68
BmgT120I	GGNCC	1 cut(s)	68
BmiI	GGNNCC	1 cut(s)	262
BmsI	GCATC	2 cut(s)	795, 799
BmtI	GCTAGC	1 cut(s)	659
BpiI	GAAGAC	1 cut(s)	63
BplI	GAGNNNNNCTC	2 cut(s)	140, 172
BsaHI	GRCGYC	1 cut(s)	369
BsaXI	ACNNNNNCTCC	2 cut(s)	372, 402
Bse118I	RCCGGY	1 cut(s)	467
BseGI	GGATG	1 cut(s)	341
BseMII	CTCAG	2 cut(s)	413, 651
BseXI	GCAGC	1 cut(s)	695
Bsh1236I	CGCG	1 cut(s)	8
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	297
BsiSI	CCGG	1 cut(s)	468
BsmAI	GTCTC	1 cut(s)	156
BsmI	GAATGC	1 cut(s)	224
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	297
Bsp1407I	TGTACA	1 cut(s)	359
Bsp143I	GATC	3 cut(s)	121, 338, 644
BspACI	CCGC	3 cut(s)	6, 24, 497
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	412, 652
BspFNI	CGCG	1 cut(s)	8
BspLI	GGNNCC	1 cut(s)	262
BspOI	GCTAGC	1 cut(s)	659
BspPI	GGATC	1 cut(s)	639
BsrFI	RCCGGY	1 cut(s)	467
BsrGI	TGTACA	1 cut(s)	359
BssAI	RCCGGY	1 cut(s)	467
BssMI	GATC	3 cut(s)	121, 338, 644
BssNAI	GTATAC	1 cut(s)	278
BssNI	GRCGYC	1 cut(s)	369
BssSI	CACGAG	1 cut(s)	104
Bst1107I	GTATAC	1 cut(s)	278
Bst2BI	CACGAG	1 cut(s)	104
Bst4CI	ACNGT	4 cut(s)	245, 359, 523, 652
Bst6I	CTCTTC	4 cut(s)	46, 129, 398, 449
BstACI	GRCGYC	1 cut(s)	369
BstAUI	TGTACA	1 cut(s)	359
BstC8I	GCNNGC	2 cut(s)	24, 657
BstDEI	CTNAG	3 cut(s)	248, 399, 660
BstF5I	GGATG	1 cut(s)	341
BstFNI	CGCG	1 cut(s)	8
BstKTI	GATC	3 cut(s)	124, 341, 647
BstMAI	GTCTC	1 cut(s)	156
BstMBI	GATC	3 cut(s)	121, 338, 644
BstNSI	RCATGY	1 cut(s)	771
BstUI	CGCG	1 cut(s)	8
BstV1I	GCAGC	1 cut(s)	695
BstV2I	GAAGAC	1 cut(s)	63
BstX2I	RGATCY	1 cut(s)	644
BstYI	RGATCY	1 cut(s)	644
BstZ17I	GTATAC	1 cut(s)	278
BsuI	GTATCC	1 cut(s)	342
BsuRI	GGCC	1 cut(s)	5
BtgZI	GCGATG	1 cut(s)	716
BtsCI	GGATG	1 cut(s)	341
BtsIMutI	CAGTG	1 cut(s)	657
Cac8I	GCNNGC	2 cut(s)	24, 657
Cfr10I	RCCGGY	1 cut(s)	467
Cfr13I	GGNCC	1 cut(s)	68
Csp6I	GTAC	1 cut(s)	360
CviAII	CATG	2 cut(s)	437, 768
CviJI	RGCY	8 cut(s)	5, 22, 227, 489, 500, 556, 638, 659
CviKI_1	RGCY	8 cut(s)	5, 22, 227, 489, 500, 556, 638, 659
CviQI	GTAC	1 cut(s)	360
DdeI	CTNAG	3 cut(s)	248, 399, 660
DpnI	GATC	3 cut(s)	123, 340, 646
DpnII	GATC	3 cut(s)	121, 338, 644
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	4 cut(s)	46, 129, 398, 449
EarI	CTCTTC	4 cut(s)	46, 129, 398, 449
Eco47I	GGWCC	1 cut(s)	68
Eco57I	CTGAAG	1 cut(s)	69
EcoRI	GAATTC	1 cut(s)	285
FaeI	CATG	2 cut(s)	440, 771
FaiI	YATR	9 cut(s)	87, 170, 278, 300, 438, 492, 513, 535, 769
FalI	AAGNNNNNCTT	2 cut(s)	11, 43
FatI	CATG	2 cut(s)	436, 767
FauI	CCCGC	1 cut(s)	31
FbaI	TGATCA	1 cut(s)	121
FblI	GTMKAC	1 cut(s)	277
Fnu4HI	GCNGC	3 cut(s)	6, 498, 684
FokI	GGATG	1 cut(s)	328
Fsp4HI	GCNGC	3 cut(s)	6, 498, 684
FspBI	CTAG	2 cut(s)	656, 844
GluI	GCNGC	3 cut(s)	6, 498, 684
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	468
Hin1I	GRCGYC	1 cut(s)	369
Hin1II	CATG	2 cut(s)	440, 771
HinfI	GANTC	3 cut(s)	149, 200, 208
HpaII	CCGG	1 cut(s)	468
HphI	GGTGA	2 cut(s)	332, 377
Hpy166II	GTNNAC	2 cut(s)	278, 563
Hpy188I	TCNGA	4 cut(s)	49, 402, 414, 808
Hpy188III	TCNNGA	2 cut(s)	258, 290
Hpy8I	GTNNAC	2 cut(s)	278, 563
Hpy99I	CGWCG	6 cut(s)	65, 68, 83, 98, 116, 119
HpyAV	CCTTC	5 cut(s)	8, 179, 435, 577, 743
HpyCH4III	ACNGT	4 cut(s)	245, 359, 523, 652
HpyCH4IV	ACGT	2 cut(s)	172, 369
HpyCH4V	TGCA	2 cut(s)	222, 767
HpyF3I	CTNAG	3 cut(s)	248, 399, 660
HpySE526I	ACGT	2 cut(s)	172, 369
Hsp92I	GRCGYC	1 cut(s)	369
Hsp92II	CATG	2 cut(s)	440, 771
Ksp22I	TGATCA	1 cut(s)	121
Kzo9I	GATC	3 cut(s)	121, 338, 644
LmnI	GCTCC	2 cut(s)	553, 680
LpnPI	CCDG	5 cut(s)	84, 243, 348, 349, 481
Lsp1109I	GCAGC	1 cut(s)	695
LweI	GCATC	2 cut(s)	795, 799
MaeI	CTAG	2 cut(s)	656, 844
MaeII	ACGT	2 cut(s)	172, 369
MaeIII	GTNAC	2 cut(s)	365, 770
MalI	GATC	3 cut(s)	123, 340, 646
MboI	GATC	3 cut(s)	121, 338, 644
MboII	GAAGA	7 cut(s)	33, 62, 65, 68, 146, 385, 466
MflI	RGATCY	1 cut(s)	644
MhlI	GDGCHC	1 cut(s)	297
MluCI	AATT	3 cut(s)	252, 266, 285
MlyI	GAGTC	1 cut(s)	158
MmeI	TCCRAC	2 cut(s)	183, 605
MseI	TTAA	2 cut(s)	305, 354
MspI	CCGG	1 cut(s)	468
Mva1269I	GAATGC	1 cut(s)	224
MvnI	CGCG	1 cut(s)	8
NdeII	GATC	3 cut(s)	121, 338, 644
NheI	GCTAGC	1 cut(s)	655
NlaIII	CATG	2 cut(s)	440, 771
NlaIV	GGNNCC	1 cut(s)	262
NmuCI	GTSAC	1 cut(s)	365
NspI	RCATGY	1 cut(s)	771
PcsI	WCGNNNNNNNCGW	2 cut(s)	102, 111
PctI	GAATGC	1 cut(s)	224
PfeI	GAWTC	2 cut(s)	200, 208
PkrI	GCNGC	3 cut(s)	7, 499, 685
PleI	GAGTC	1 cut(s)	157
PpsI	GAGTC	1 cut(s)	157
PspN4I	GGNNCC	1 cut(s)	262
PspPI	GGNCC	1 cut(s)	68
PsuI	RGATCY	1 cut(s)	644
RsaI	GTAC	1 cut(s)	361
RsaNI	GTAC	1 cut(s)	360
SaqAI	TTAA	2 cut(s)	305, 354
SatI	GCNGC	3 cut(s)	6, 498, 684
Sau3AI	GATC	3 cut(s)	121, 338, 644
Sau96I	GGNCC	1 cut(s)	68
SchI	GAGTC	1 cut(s)	158
SduI	GDGCHC	1 cut(s)	297
SfaNI	GCATC	2 cut(s)	795, 799
SinI	GGWCC	1 cut(s)	68
Sse9I	AATT	3 cut(s)	252, 266, 285
SsiI	CCGC	3 cut(s)	6, 24, 497
SspMI	CTAG	2 cut(s)	656, 844
TaaI	ACNGT	4 cut(s)	245, 359, 523, 652
TaiI	ACGT	2 cut(s)	175, 372
TaqI	TCGA	2 cut(s)	141, 722
TasI	AATT	3 cut(s)	252, 266, 285
TatI	WGTACW	1 cut(s)	359
TauI	GCSGC	2 cut(s)	8, 500
TfiI	GAWTC	2 cut(s)	200, 208
Tru1I	TTAA	2 cut(s)	305, 354
Tru9I	TTAA	2 cut(s)	305, 354
TscAI	CASTG	1 cut(s)	657
TseFI	GTSAC	1 cut(s)	365
TseI	GCWGC	1 cut(s)	683
Tsp45I	GTSAC	1 cut(s)	365
TspDTI	ATGAA	4 cut(s)	398, 620, 648, 719
TspGWI	ACGGA	1 cut(s)	81
TspRI	CASTG	1 cut(s)	657
VpaK11BI	GGWCC	1 cut(s)	68
XapI	RAATTY	2 cut(s)	252, 285
XceI	RCATGY	1 cut(s)	771
XmiI	GTMKAC	1 cut(s)	277
XspI	CTAG	2 cut(s)	656, 844
ZraI	GACGTC	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.