Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004312

Physical Location & Seq

Genomic Coordinates Forward (+)

15973784 .. 15977494

Gene Structure 3711 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017385

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGACAAGGCATGGAAGGGTTCTCGGGAAGAGAGTTGTTGCCGGTAGGGTTGTCAAAGAAAGCTATGGTGCGGCTAAACAACAGCATACTTTTACGGTTGAAGTGTTATGGAGTAGGGGAATGAAGGAGCTGTGTCCACTATTTCCTCTGCTTGTGAAGGGTCGCAATCTCTACAAAATGAAACTTTTAAGCAGGTATAATGAAGCTGAAAGATCCACAGTGCTAGCTGAGAAGCACAGACGAGGTGGAGCAGCAAGACTTGTGAGAGCGATGAAAAAATCAAAGAAATCGACTGCCAATGGAGCTACACCAAGTGCCTACCAACTTGAGGCTCTGGACCGTCGGGAGCAACATGCTCGTTGTGCATATGAACTTTTTGATAAGGAAGGCAACAGGGCTATTGTCATTGAGAAACTAGCTTTGGAACTTGGTCTTGGCCCTTCTGCCTCTGTTCATGCGGTTCTTCATGATTGGATTAGGCACACCGACGGGAAGCTGAGTTTACTTGGATTTGTGAAATTGTTGCATGGAGTATCTAGCCGGGTTGTTGCAAAAGCTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009889 GO:0009909 GO:0009911 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAP

Protein Analysis

188

Amino Acids

20.88

Weight (kDa)

10.39

Isoelectric Point (pI)

31.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7699	PF24766	3 - 62	4.9e-27	Domain of unknown function (DUF7699)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66840 AT5G66840
fragaria_vesca	FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670
malus_domestica	MD02G1168400.v1.1
prunus_persica	Prupe.7G136600_v2.0.a1 Prupe.7G136600_v2.0.a1 Prupe.7G136600_v2.0.a1
pyrus_communis	pycom02g13550 pycom15g24350 pycom15g24360
rosa_chinensis	RchiOBHm_Chr2g0104981
rosa_laevigata	RLG00000017385
rosa_multiflora	Rmu_sc0000641.1_g000032
rosa_roxburghii	Rroxscaffold_2G00138610
rosa_rugosa	Rorug02G0124300 Rorug02G0124400 Rorug02G0124500 Rorug02G0124600 Rorug02G0124700 Rorug02G0124800
rosa_samantha	Rh2AG175100 Rh2CG179700 Rh2DG181500
rosa_wichuraiana	Rw2G013760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	183
AciI	CCGC	2 cut(s)	71, 458
AclWI	GGATC	1 cut(s)	207
AdeI	CACNNNGTG	1 cut(s)	314
AfiI	CCNNNNNNNGG	1 cut(s)	328
AgsI	TTSAA	1 cut(s)	101
AjuI	GAANNNNNNNTTGG	4 cut(s)	404, 417, 436, 449
AluBI	AGCT	8 cut(s)	63, 130, 206, 227, 305, 419, 496, 557
AluI	AGCT	8 cut(s)	63, 130, 206, 227, 305, 419, 496, 557
AlwI	GGATC	1 cut(s)	207
Ama87I	CYCGRG	1 cut(s)	23
AoxI	GGCC	1 cut(s)	436
ApeKI	GCWGC	1 cut(s)	251
AspS9I	GGNCC	2 cut(s)	337, 437
AsuC2I	CCSGG	1 cut(s)	542
AsuNHI	GCTAGC	1 cut(s)	223
AvaI	CYCGRG	1 cut(s)	23
AvaII	GGWCC	1 cut(s)	337
BbvI	GCAGC	1 cut(s)	263
BcgI	CGANNNNNNTGC	2 cut(s)	338, 372
BcnI	CCSGG	1 cut(s)	542
BfaI	CTAG	3 cut(s)	224, 416, 537
BfuAI	ACCTGC	1 cut(s)	183
BisI	GCNGC	2 cut(s)	72, 252
BlsI	GCNGC	2 cut(s)	73, 253
Bme1390I	CCNGG	1 cut(s)	542
Bme18I	GGWCC	1 cut(s)	337
BmeT110I	CYCGRG	1 cut(s)	23
BmgT120I	GGNCC	2 cut(s)	337, 437
BmrFI	CCNGG	1 cut(s)	542
BmtI	GCTAGC	1 cut(s)	227
BpuEI	CTTGAG	1 cut(s)	347
BpuMI	CCSGG	1 cut(s)	542
Bsc4I	CCNNNNNNNGG	1 cut(s)	328
Bse118I	RCCGGY	1 cut(s)	41
BseLI	CCNNNNNNNGG	1 cut(s)	328
BseMII	CTCAG	2 cut(s)	219, 488
BseXI	GCAGC	1 cut(s)	263
BshFI	GGCC	1 cut(s)	438
BsiHKCI	CYCGRG	1 cut(s)	23
BsiSI	CCGG	2 cut(s)	42, 541
BslI	CCNNNNNNNGG	1 cut(s)	328
BsnI	GGCC	1 cut(s)	438
BsoBI	CYCGRG	1 cut(s)	23
Bsp143I	GATC	1 cut(s)	212
BspACI	CCGC	2 cut(s)	71, 458
BspANI	GGCC	1 cut(s)	438
BspCNI	CTCAG	2 cut(s)	220, 489
BspHI	TCATGA	1 cut(s)	466
BspMI	ACCTGC	1 cut(s)	183
BspOI	GCTAGC	1 cut(s)	227
BspPI	GGATC	1 cut(s)	207
BsrFI	RCCGGY	1 cut(s)	41
BssAI	RCCGGY	1 cut(s)	41
BssMI	GATC	1 cut(s)	212
Bst4CI	ACNGT	3 cut(s)	97, 220, 341
Bst6I	CTCTTC	1 cut(s)	23
BstC8I	GCNNGC	1 cut(s)	225
BstDEI	CTNAG	2 cut(s)	228, 497
BstKTI	GATC	1 cut(s)	215
BstMBI	GATC	1 cut(s)	212
BstMWI	GCNNNNNNNGC	2 cut(s)	302, 362
BstNSI	RCATGY	1 cut(s)	356
BstSCI	CCNGG	1 cut(s)	540
BstV1I	GCAGC	1 cut(s)	263
BstX2I	RGATCY	1 cut(s)	212
BstYI	RGATCY	1 cut(s)	212
BsuRI	GGCC	1 cut(s)	438
BtgZI	GCGATG	1 cut(s)	284
BtsIMutI	CAGTG	1 cut(s)	225
BveI	ACCTGC	1 cut(s)	183
Cac8I	GCNNGC	1 cut(s)	225
CciI	TCATGA	1 cut(s)	466
Cfr10I	RCCGGY	1 cut(s)	41
Cfr13I	GGNCC	2 cut(s)	337, 437
CviAII	CATG	5 cut(s)	11, 353, 455, 467, 527
DdeI	CTNAG	2 cut(s)	228, 497
DpnI	GATC	1 cut(s)	214
DpnII	GATC	1 cut(s)	212
DraIII	CACNNNGTG	1 cut(s)	314
Eam1104I	CTCTTC	1 cut(s)	23
EarI	CTCTTC	1 cut(s)	23
Eco47I	GGWCC	1 cut(s)	337
Eco88I	CYCGRG	1 cut(s)	23
FaeI	CATG	5 cut(s)	14, 356, 458, 470, 530
FatI	CATG	5 cut(s)	10, 352, 454, 466, 526
FauNDI	CATATG	1 cut(s)	367
Fnu4HI	GCNGC	2 cut(s)	72, 252
Fsp4HI	GCNGC	2 cut(s)	72, 252
FspBI	CTAG	3 cut(s)	224, 416, 537
GluI	GCNGC	2 cut(s)	72, 252
HaeIII	GGCC	1 cut(s)	438
HapII	CCGG	2 cut(s)	42, 541
Hin1II	CATG	5 cut(s)	14, 356, 458, 470, 530
HpaII	CCGG	2 cut(s)	42, 541
Hpy166II	GTNNAC	2 cut(s)	137, 503
Hpy188III	TCNNGA	4 cut(s)	25, 335, 344, 467
Hpy8I	GTNNAC	2 cut(s)	137, 503
Hpy99I	CGWCG	2 cut(s)	345, 491
HpyAV	CCTTC	5 cut(s)	9, 118, 151, 380, 450
HpyCH4III	ACNGT	3 cut(s)	97, 220, 341
HpyCH4V	TGCA	3 cut(s)	365, 526, 551
HpyF10VI	GCNNNNNNNGC	2 cut(s)	302, 362
HpyF3I	CTNAG	2 cut(s)	228, 497
Hsp92II	CATG	5 cut(s)	14, 356, 458, 470, 530
Kzo9I	GATC	1 cut(s)	212
LmnI	GCTCC	4 cut(s)	127, 248, 302, 346
LpnPI	CCDG	5 cut(s)	55, 178, 320, 379, 554
Lsp1109I	GCAGC	1 cut(s)	263
MaeI	CTAG	3 cut(s)	224, 416, 537
MalI	GATC	1 cut(s)	214
MboI	GATC	1 cut(s)	212
MboII	GAAGA	2 cut(s)	40, 455
MflI	RGATCY	1 cut(s)	212
MluCI	AATT	1 cut(s)	518
MnlI	CCTC	4 cut(s)	156, 236, 322, 457
MseI	TTAA	1 cut(s)	188
MspI	CCGG	2 cut(s)	42, 541
MspR9I	CCNGG	1 cut(s)	542
MwoI	GCNNNNNNNGC	2 cut(s)	302, 362
NciI	CCSGG	1 cut(s)	542
NdeI	CATATG	1 cut(s)	367
NdeII	GATC	1 cut(s)	212
NheI	GCTAGC	1 cut(s)	223
NlaIII	CATG	5 cut(s)	14, 356, 458, 470, 530
NspI	RCATGY	1 cut(s)	356
PagI	TCATGA	1 cut(s)	466
PkrI	GCNGC	2 cut(s)	73, 253
PspPI	GGNCC	2 cut(s)	337, 437
PsuI	RGATCY	1 cut(s)	212
SaqAI	TTAA	1 cut(s)	188
SatI	GCNGC	2 cut(s)	72, 252
Sau3AI	GATC	1 cut(s)	212
Sau96I	GGNCC	2 cut(s)	337, 437
ScrFI	CCNGG	1 cut(s)	542
SinI	GGWCC	1 cut(s)	337
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
Sse9I	AATT	1 cut(s)	518
SsiI	CCGC	2 cut(s)	71, 458
SspMI	CTAG	3 cut(s)	224, 416, 537
StyD4I	CCNGG	1 cut(s)	540
TaaI	ACNGT	3 cut(s)	97, 220, 341
TaqI	TCGA	1 cut(s)	290
TasI	AATT	1 cut(s)	518
TauI	GCSGC	1 cut(s)	74
Tru1I	TTAA	1 cut(s)	188
Tru9I	TTAA	1 cut(s)	188
TscAI	CASTG	1 cut(s)	225
TseI	GCWGC	1 cut(s)	251
TspDTI	ATGAA	7 cut(s)	137, 194, 216, 287, 384, 443, 455
TspRI	CASTG	1 cut(s)	225
VpaK11BI	GGWCC	1 cut(s)	337
XceI	RCATGY	1 cut(s)	356
XspI	CTAG	3 cut(s)	224, 416, 537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.