Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004312

Physical Location & Seq

Genomic Coordinates Forward (+)

10757751 .. 10759123

Gene Structure 1373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0124700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGCTCTCTGCTCCTTCTTCAACCTCCACACTCTTCACCGCTCCGCTCCTCTTCTCCGCCACTCCCTCCCCCAAATCTCCGCCACGTGTCCGCTTCCATCCCGCTCGGGCCTTCGCCTCCGCCGCCTGCGCTTCCGACGAGACCTCCACGGCGTCGTATCTCGCCCCTCCTCCTACGACGACTACCGCCTCCCTCTACGAGATCCTCGGCATCCCCGCCGCCGCCTCGTGTCACGAGATCAAAACGGCCTACCGGCGGCTCGCGAGGGTCTGCCACCCCGACGTGGCGGCGATGGAGCGGAAGGACTCGTCGGCCGACGAGTTCATGAGGATCCACGACGCCTACTCCACCCTCTCCGACCCAGAAAAGCGAGCCGAGTACGACCGGAAGATGTTCCGGAGGAGCAGGCCGTTGTCGGCGGATTATTCTAGATACTATTCTGGCCGGAATTGGGAGACTGATCAGTGCTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009889 GO:0009909 GO:0009911 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAP

Protein Analysis

157

Amino Acids

17.49

Weight (kDa)

8.72

Isoelectric Point (pI)

60.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	65 - 128	1.1e-20	DnaJ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66840 AT5G66840
fragaria_vesca	FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670
malus_domestica	MD02G1168400.v1.1
prunus_persica	Prupe.7G136600_v2.0.a1 Prupe.7G136600_v2.0.a1 Prupe.7G136600_v2.0.a1
pyrus_communis	pycom02g13550 pycom15g24350 pycom15g24360
rosa_chinensis	RchiOBHm_Chr2g0104981
rosa_laevigata	RLG00000017385
rosa_multiflora	Rmu_sc0000641.1_g000032
rosa_roxburghii	Rroxscaffold_2G00138610
rosa_rugosa	Rorug02G0124300 Rorug02G0124400 Rorug02G0124500 Rorug02G0124600 Rorug02G0124700 Rorug02G0124800
rosa_samantha	Rh2AG175100 Rh2CG179700 Rh2DG181500
rosa_wichuraiana	Rw2G013760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	4 cut(s)	41, 46, 104, 298
AccII	CGCG	1 cut(s)	263
AccIII	TCCGGA	1 cut(s)	396
AclWI	GGATC	3 cut(s)	196, 325, 338
AcoI	YGGCCR	2 cut(s)	312, 442
AcvI	CACGTG	1 cut(s)	86
AcyI	GRCGYC	2 cut(s)	152, 339
AfaI	GTAC	1 cut(s)	380
AfiI	CCNNNNNNNGG	3 cut(s)	255, 283, 451
AflIII	ACRYGT	1 cut(s)	85
AgsI	TTSAA	1 cut(s)	21
AjiI	CACGTC	1 cut(s)	283
Alw26I	GTCTC	2 cut(s)	134, 449
AlwI	GGATC	3 cut(s)	196, 325, 338
Ama87I	CYCGRG	1 cut(s)	105
Aor13HI	TCCGGA	1 cut(s)	396
AoxI	GGCC	5 cut(s)	108, 246, 312, 407, 442
Asp700I	GAANNNNTTC	1 cut(s)	392
AspLEI	GCGC	1 cut(s)	131
AspS9I	GGNCC	1 cut(s)	108
AsuHPI	GGTGA	1 cut(s)	28
AvaI	CYCGRG	1 cut(s)	105
BamHI	GGATCC	1 cut(s)	330
BauI	CACGAG	2 cut(s)	226, 233
BbrPI	CACGTG	1 cut(s)	86
BccI	CCATC	2 cut(s)	105, 286
BceAI	ACGGC	3 cut(s)	165, 261, 394
BclI	TGATCA	1 cut(s)	460
BcoDI	GTCTC	2 cut(s)	134, 449
BfaI	CTAG	1 cut(s)	429
BisI	GCNGC	5 cut(s)	123, 219, 222, 257, 288
BlsI	GCNGC	5 cut(s)	124, 220, 223, 258, 289
BmeT110I	CYCGRG	1 cut(s)	105
BmgBI	CACGTC	1 cut(s)	283
BmgT120I	GGNCC	1 cut(s)	108
BmiI	GGNNCC	1 cut(s)	332
BmsI	GCATC	1 cut(s)	219
BsaAI	YACGTR	1 cut(s)	86
BsaHI	GRCGYC	2 cut(s)	152, 339
BsaI	GGTCTC	1 cut(s)	134
BsaJI	CCNNGG	2 cut(s)	147, 205
BsaWI	WCCGGW	2 cut(s)	384, 396
BsaXI	ACNNNNNCTCC	4 cut(s)	128, 158, 329, 359
Bsc4I	CCNNNNNNNGG	3 cut(s)	255, 283, 451
Bse118I	RCCGGY	1 cut(s)	252
BseAI	TCCGGA	1 cut(s)	396
BseDI	CCNNGG	2 cut(s)	147, 205
BseGI	GGATG	2 cut(s)	97, 210
BseLI	CCNNNNNNNGG	3 cut(s)	255, 283, 451
BseRI	GAGGAG	3 cut(s)	38, 159, 415
BseX3I	CGGCCG	1 cut(s)	312
Bsh1236I	CGCG	1 cut(s)	263
Bsh1285I	CGRYCG	2 cut(s)	315, 385
BshFI	GGCC	5 cut(s)	110, 248, 314, 409, 444
BsiEI	CGRYCG	2 cut(s)	315, 385
BsiHKCI	CYCGRG	1 cut(s)	105
BsiSI	CCGG	4 cut(s)	253, 385, 397, 445
BslI	CCNNNNNNNGG	3 cut(s)	255, 283, 451
BsmAI	GTCTC	2 cut(s)	134, 449
BsnI	GGCC	5 cut(s)	110, 248, 314, 409, 444
Bso31I	GGTCTC	1 cut(s)	134
BsoBI	CYCGRG	1 cut(s)	105
Bsp13I	TCCGGA	1 cut(s)	396
Bsp143I	GATC	4 cut(s)	201, 237, 330, 460
Bsp68I	TCGCGA	1 cut(s)	263
BspANI	GGCC	5 cut(s)	110, 248, 314, 409, 444
BspEI	TCCGGA	1 cut(s)	396
BspFNI	CGCG	1 cut(s)	263
BspHI	TCATGA	1 cut(s)	324
BspLI	GGNNCC	1 cut(s)	332
BspPI	GGATC	3 cut(s)	196, 325, 338
BspTNI	GGTCTC	1 cut(s)	134
BsrBI	CCGCTC	4 cut(s)	41, 46, 104, 298
BsrFI	RCCGGY	1 cut(s)	252
BssAI	RCCGGY	1 cut(s)	252
BssECI	CCNNGG	2 cut(s)	147, 205
BssMI	GATC	4 cut(s)	201, 237, 330, 460
BssNI	GRCGYC	2 cut(s)	152, 339
BssSI	CACGAG	2 cut(s)	226, 233
Bst2BI	CACGAG	2 cut(s)	226, 233
Bst6I	CTCTTC	2 cut(s)	38, 56
BstACI	GRCGYC	2 cut(s)	152, 339
BstBAI	YACGTR	1 cut(s)	86
BstC8I	GCNNGC	4 cut(s)	127, 261, 372, 407
BstDSI	CCRYGG	1 cut(s)	147
BstF5I	GGATG	2 cut(s)	97, 210
BstFNI	CGCG	1 cut(s)	263
BstHHI	GCGC	1 cut(s)	131
BstKTI	GATC	4 cut(s)	204, 240, 333, 463
BstMAI	GTCTC	2 cut(s)	134, 449
BstMBI	GATC	4 cut(s)	201, 237, 330, 460
BstMCI	CGRYCG	2 cut(s)	315, 385
BstMWI	GCNNNNNNNGC	2 cut(s)	122, 128
BstUI	CGCG	1 cut(s)	263
BstX2I	RGATCY	2 cut(s)	201, 330
BstYI	RGATCY	2 cut(s)	201, 330
BstZI	CGGCCG	1 cut(s)	312
BsuRI	GGCC	5 cut(s)	110, 248, 314, 409, 444
BtgI	CCRYGG	1 cut(s)	147
BtgZI	GCGATG	1 cut(s)	305
BtrI	CACGTC	1 cut(s)	283
BtsCI	GGATG	2 cut(s)	97, 210
BtsIMutI	CAGTG	1 cut(s)	470
BtuMI	TCGCGA	1 cut(s)	263
Cac8I	GCNNGC	4 cut(s)	127, 261, 372, 407
CciI	TCATGA	1 cut(s)	324
CfoI	GCGC	1 cut(s)	131
Cfr10I	RCCGGY	1 cut(s)	252
Cfr13I	GGNCC	1 cut(s)	108
CseI	GACGC	2 cut(s)	141, 347
Csp6I	GTAC	1 cut(s)	379
CviAII	CATG	1 cut(s)	325
CviJI	RGCY	7 cut(s)	110, 248, 259, 314, 374, 409, 444
CviKI_1	RGCY	7 cut(s)	110, 248, 259, 314, 374, 409, 444
CviQI	GTAC	1 cut(s)	379
DpnI	GATC	4 cut(s)	203, 239, 332, 462
DpnII	GATC	4 cut(s)	201, 237, 330, 460
EaeI	YGGCCR	2 cut(s)	312, 442
EagI	CGGCCG	1 cut(s)	312
Eam1104I	CTCTTC	2 cut(s)	38, 56
EarI	CTCTTC	2 cut(s)	38, 56
EciI	GGCGGA	4 cut(s)	46, 69, 109, 434
EclXI	CGGCCG	1 cut(s)	312
Eco31I	GGTCTC	1 cut(s)	134
Eco52I	CGGCCG	1 cut(s)	312
Eco72I	CACGTG	1 cut(s)	86
Eco88I	CYCGRG	1 cut(s)	105
FaeI	CATG	1 cut(s)	328
FaiI	YATR	1 cut(s)	326
FatI	CATG	1 cut(s)	324
FauI	CCCGC	2 cut(s)	109, 223
FbaI	TGATCA	1 cut(s)	460
Fnu4HI	GCNGC	5 cut(s)	123, 219, 222, 257, 288
FokI	GGATG	2 cut(s)	84, 197
Fsp4HI	GCNGC	5 cut(s)	123, 219, 222, 257, 288
FspBI	CTAG	1 cut(s)	429
GlaI	GCGC	1 cut(s)	130
GluI	GCNGC	5 cut(s)	123, 219, 222, 257, 288
HaeIII	GGCC	5 cut(s)	110, 248, 314, 409, 444
HapII	CCGG	4 cut(s)	253, 385, 397, 445
HgaI	GACGC	2 cut(s)	141, 347
HhaI	GCGC	1 cut(s)	131
Hin1I	GRCGYC	2 cut(s)	152, 339
Hin1II	CATG	1 cut(s)	328
Hin6I	GCGC	1 cut(s)	129
HinP1I	GCGC	1 cut(s)	129
HinfI	GANTC	1 cut(s)	305
HpaII	CCGG	4 cut(s)	253, 385, 397, 445
HphI	GGTGA	1 cut(s)	28
Hpy188I	TCNGA	2 cut(s)	136, 358
Hpy188III	TCNNGA	5 cut(s)	233, 262, 325, 397, 429
Hpy99I	CGWCG	7 cut(s)	140, 157, 181, 284, 313, 320, 341
HpyAV	CCTTC	3 cut(s)	24, 121, 295
HpyCH4IV	ACGT	2 cut(s)	85, 282
HpyF10VI	GCNNNNNNNGC	2 cut(s)	122, 128
HpySE526I	ACGT	2 cut(s)	85, 282
Hsp92I	GRCGYC	2 cut(s)	152, 339
Hsp92II	CATG	1 cut(s)	328
HspAI	GCGC	1 cut(s)	129
Kpn2I	TCCGGA	1 cut(s)	396
Ksp22I	TGATCA	1 cut(s)	460
Kzo9I	GATC	4 cut(s)	201, 237, 330, 460
LmnI	GCTCC	5 cut(s)	16, 46, 51, 295, 402
LpnPI	CCDG	9 cut(s)	139, 266, 375, 391, 398, 410, 426, 454, 458
LweI	GCATC	1 cut(s)	219
MaeI	CTAG	1 cut(s)	429
MaeII	ACGT	2 cut(s)	85, 282
MaeIII	GTNAC	1 cut(s)	230
MalI	GATC	4 cut(s)	203, 239, 332, 462
MbiI	CCGCTC	4 cut(s)	41, 46, 104, 298
MboI	GATC	4 cut(s)	201, 237, 330, 460
MboII	GAAGA	4 cut(s)	9, 25, 43, 400
MflI	RGATCY	2 cut(s)	201, 330
MluCI	AATT	1 cut(s)	448
MlyI	GAGTC	1 cut(s)	299
MmeI	TCCRAC	2 cut(s)	159, 381
MroI	TCCGGA	1 cut(s)	396
MroXI	GAANNNNTTC	1 cut(s)	392
MspI	CCGG	4 cut(s)	253, 385, 397, 445
MvnI	CGCG	1 cut(s)	263
MwoI	GCNNNNNNNGC	2 cut(s)	122, 128
NdeII	GATC	4 cut(s)	201, 237, 330, 460
NlaIII	CATG	1 cut(s)	328
NlaIV	GGNNCC	1 cut(s)	332
NmeAIII	GCCGAG	2 cut(s)	186, 400
NmuCI	GTSAC	1 cut(s)	230
NruI	TCGCGA	1 cut(s)	263
PagI	TCATGA	1 cut(s)	324
PdmI	GAANNNNTTC	1 cut(s)	392
PkrI	GCNGC	5 cut(s)	124, 220, 223, 258, 289
PleI	GAGTC	1 cut(s)	299
PmaCI	CACGTG	1 cut(s)	86
PmlI	CACGTG	1 cut(s)	86
PpsI	GAGTC	1 cut(s)	299
Ppu21I	YACGTR	1 cut(s)	86
PspCI	CACGTG	1 cut(s)	86
PspN4I	GGNNCC	1 cut(s)	332
PspPI	GGNCC	1 cut(s)	108
PsuI	RGATCY	2 cut(s)	201, 330
RruI	TCGCGA	1 cut(s)	263
RsaI	GTAC	1 cut(s)	380
RsaNI	GTAC	1 cut(s)	379
SatI	GCNGC	5 cut(s)	123, 219, 222, 257, 288
Sau3AI	GATC	4 cut(s)	201, 237, 330, 460
Sau96I	GGNCC	1 cut(s)	108
SchI	GAGTC	1 cut(s)	299
SetI	ASST	4 cut(s)	26, 88, 146, 285
SfaNI	GCATC	1 cut(s)	219
Sse9I	AATT	1 cut(s)	448
SspMI	CTAG	1 cut(s)	429
TaiI	ACGT	2 cut(s)	88, 285
TasI	AATT	1 cut(s)	448
TauI	GCSGC	5 cut(s)	125, 221, 224, 259, 290
TscAI	CASTG	1 cut(s)	470
TseFI	GTSAC	1 cut(s)	230
Tsp45I	GTSAC	1 cut(s)	230
TspDTI	ATGAA	1 cut(s)	313
TspRI	CASTG	1 cut(s)	470
XbaI	TCTAGA	1 cut(s)	428
XmnI	GAANNNNTTC	1 cut(s)	392
XspI	CTAG	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.