Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0004312

Physical Location & Seq

Genomic Coordinates Forward (+)

14913108 .. 14916254

Gene Structure 3147 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G013760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGGCCGCGAGGGAAGGTAAGCCCGCCTTTATTTGTATCTCTTCGTCTGAAGAAGAAGACGACGACGGACCAGAGAGCGACGACTATGATTACGACGATGATCAAATGGAGGAAGAGGTCGATGACGAGTCTCTCTCCAACAAAGTCATACGTTTCCTCAAAGAGGGGAGTGATTTAGATTCTTTGAATCTCAAAGAATGCAAAGCCTATTTGCGAAAGCACGGTCTTAGAATTTCAGGAACCAAATTGATTTGTATACAAAGAATTCAAGAGCACCAGAGATTAAAAGATGGAAATGGTGAAGCATTGTATCCCAGATCATCTTTTGCAATTAACTGTACAGGTGACGTCTGTAAGGGAGATGTCGTCCTCTTCACTCAGAAAGTTCATCAGAAGTTTGATAAGATGACAAGGCATGGAAGGGTTCTTGGGAAGAGAGTTGTTGCCGGCAGGGTTGTCAAAGAAAGCTATGGTGCGGCTAAACAACAGCATACTTTTACGGTTGAAGTGTTATGGAGTAGGGGAATAAGGGAGCTGTGTCCACTATTTCCTCTGCTTGTGAAGGGTCGCAATCTCTACAAAATGAAAACTTTTAGACAGCGTTGGAGTAATGAAGCTGAAAGATCCACAGTGCTAGCTGAGAAGCACAGACGAGGTGGAGCAGCAAGACTTGTGAGAGCGATGAAAAAATTAAAGAAATCGACTGCCAATGGAGGTATGAAGTGTCACAACCAATCCCAATTTTCTAAACCAAACAACAAGCGAAAGACTACAGAATCAGAAAGGGGGAAGCACGCAAGATCTGCAAGAGCAGCACCTTCAGAACAGATGAGTTTCCAACAAAATGCAAGGAGTAAAACCTCTCAACGTTCTAGTAAGCGCCATAAAGCAGTTCACCCTAATATAGATAGAGTTCCAACTCTCCAGTCACAGTCTAATCCTCGAATTTGTCATCCATCTCAAATAGAATCTCAACACAGGGATGCTCCTTTCCCATATGCTAGTCATCCCATAGGCTCCACTTCAACCGTGTTGAGATATCCTACAGCAACTGATGCTACTACCCGCTTCACTGACAGAAATTATAGCCACTATGGCTACATAGATCCTGTCTATAATCGGGAGTTGAACAACCGGAATCAATTATCAGGATCGGATGCTGGCAGGCCATTTCATCTCTATATGTCAGCAGCTGGGAACTATGGACATAGGGGGTATAGAGATCTTTCTTTTCTAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009889 GO:0009909 GO:0009911 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAP

Protein Analysis

413

Amino Acids

46.98

Weight (kDa)

9.65

Isoelectric Point (pI)

56.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAP	PF02037	58 - 93	7.9e-07	SAP domain
DUF7699	PF24766	118 - 202	4.4e-40	Domain of unknown function (DUF7699)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66840 AT5G66840
fragaria_vesca	FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670
malus_domestica	MD02G1168400.v1.1
prunus_persica	Prupe.7G136600_v2.0.a1 Prupe.7G136600_v2.0.a1 Prupe.7G136600_v2.0.a1
pyrus_communis	pycom02g13550 pycom15g24350 pycom15g24360
rosa_chinensis	RchiOBHm_Chr2g0104981
rosa_laevigata	RLG00000017385
rosa_multiflora	Rmu_sc0000641.1_g000032
rosa_roxburghii	Rroxscaffold_2G00138610
rosa_rugosa	Rorug02G0124300 Rorug02G0124400 Rorug02G0124500 Rorug02G0124600 Rorug02G0124700 Rorug02G0124800
rosa_samantha	Rh2AG175100 Rh2CG179700 Rh2DG181500
rosa_wichuraiana	Rw2G013760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	351
AccI	GTMKAC	1 cut(s)	256
AccII	CGCG	1 cut(s)	8
AciI	CCGC	4 cut(s)	6, 24, 476, 1066
AclI	AACGTT	1 cut(s)	868
AclWI	GGATC	3 cut(s)	618, 1100, 1159
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	3 cut(s)	231, 264, 945
AcuI	CTGAAG	2 cut(s)	69, 804
AcyI	GRCGYC	1 cut(s)	348
AfaI	GTAC	1 cut(s)	340
AfiI	CCNNNNNNNGG	1 cut(s)	163
AgsI	TTSAA	5 cut(s)	187, 269, 506, 1026, 1129
AluBI	AGCT	5 cut(s)	468, 535, 617, 638, 1193
AluI	AGCT	5 cut(s)	468, 535, 617, 638, 1193
Alw21I	GWGCWC	1 cut(s)	276
Alw26I	GTCTC	1 cut(s)	135
AlwI	GGATC	3 cut(s)	618, 1100, 1159
AlwNI	CAGNNNCTG	2 cut(s)	1052, 1193
AoxI	GGCC	2 cut(s)	3, 1166
ApeKI	GCWGC	3 cut(s)	662, 812, 1190
ApoI	RAATTY	3 cut(s)	231, 264, 945
ArsI	GACNNNNNNTTYG	2 cut(s)	208, 240
AspLEI	GCGC	1 cut(s)	882
AspS9I	GGNCC	1 cut(s)	68
AsuHPI	GGTGA	3 cut(s)	311, 356, 887
AsuNHI	GCTAGC	1 cut(s)	634
AvaII	GGWCC	1 cut(s)	68
BbsI	GAAGAC	1 cut(s)	63
Bbv12I	GWGCWC	1 cut(s)	276
BbvI	GCAGC	3 cut(s)	674, 824, 1202
BccI	CCATC	2 cut(s)	284, 964
BciVI	GTATCC	1 cut(s)	321
BclI	TGATCA	1 cut(s)	100
BcoDI	GTCTC	1 cut(s)	135
BfaI	CTAG	3 cut(s)	635, 873, 1002
BfmI	CTRYAG	2 cut(s)	771, 1044
BfoI	RGCGCY	1 cut(s)	883
BfuI	GTATCC	1 cut(s)	321
BglI	GCCNNNNNGGC	1 cut(s)	1095
BglII	AGATCT	2 cut(s)	800, 1222
BisI	GCNGC	5 cut(s)	6, 477, 663, 813, 1191
BlsI	GCNGC	5 cut(s)	7, 478, 664, 814, 1192
Bme18I	GGWCC	1 cut(s)	68
BmgT120I	GGNCC	1 cut(s)	68
BmiI	GGNNCC	2 cut(s)	241, 1018
BmsI	GCATC	3 cut(s)	973, 1045, 1147
BmtI	GCTAGC	1 cut(s)	638
BpiI	GAAGAC	1 cut(s)	63
BplI	GAGNNNNNCTC	2 cut(s)	119, 151
BpmI	CTGGAG	1 cut(s)	908
BsaHI	GRCGYC	1 cut(s)	348
BsaWI	WCCGGW	1 cut(s)	1134
BsaXI	ACNNNNNCTCC	2 cut(s)	351, 381
Bsc4I	CCNNNNNNNGG	1 cut(s)	163
Bse118I	RCCGGY	1 cut(s)	446
Bse1I	ACTGG	1 cut(s)	925
BseGI	GGATG	4 cut(s)	952, 988, 1006, 1162
BseLI	CCNNNNNNNGG	1 cut(s)	163
BseMII	CTCAG	2 cut(s)	392, 630
BseNI	ACTGG	1 cut(s)	925
BseXI	GCAGC	3 cut(s)	674, 824, 1202
BseYI	CCCAGC	1 cut(s)	1193
Bsh1236I	CGCG	1 cut(s)	8
BshFI	GGCC	2 cut(s)	5, 1168
BsiHKAI	GWGCWC	1 cut(s)	276
BsiSI	CCGG	2 cut(s)	447, 1135
BslI	CCNNNNNNNGG	1 cut(s)	163
BsmAI	GTCTC	1 cut(s)	135
BsmI	GAATGC	1 cut(s)	203
BsnI	GGCC	2 cut(s)	5, 1168
Bsp1286I	GDGCHC	1 cut(s)	276
Bsp1407I	TGTACA	1 cut(s)	338
Bsp143I	GATC	7 cut(s)	100, 317, 623, 800, 1105, 1151, 1222
BspACI	CCGC	4 cut(s)	6, 24, 476, 1066
BspANI	GGCC	2 cut(s)	5, 1168
BspCNI	CTCAG	2 cut(s)	391, 631
BspFNI	CGCG	1 cut(s)	8
BspLI	GGNNCC	2 cut(s)	241, 1018
BspOI	GCTAGC	1 cut(s)	638
BspPI	GGATC	3 cut(s)	618, 1100, 1159
BsrFI	RCCGGY	1 cut(s)	446
BsrGI	TGTACA	1 cut(s)	338
BsrI	ACTGG	1 cut(s)	925
BssAI	RCCGGY	1 cut(s)	446
BssMI	GATC	7 cut(s)	100, 317, 623, 800, 1105, 1151, 1222
BssNAI	GTATAC	1 cut(s)	257
BssNI	GRCGYC	1 cut(s)	348
Bst1107I	GTATAC	1 cut(s)	257
Bst4CI	ACNGT	6 cut(s)	224, 338, 502, 631, 933, 1030
Bst6I	CTCTTC	4 cut(s)	46, 108, 377, 428
BstACI	GRCGYC	1 cut(s)	348
BstAPI	GCANNNNNTGC	2 cut(s)	803, 1055
BstAUI	TGTACA	1 cut(s)	338
BstC8I	GCNNGC	6 cut(s)	24, 448, 636, 795, 1162, 1166
BstDEI	CTNAG	3 cut(s)	227, 378, 639
BstENI	CCTNNNNNAGG	1 cut(s)	161
BstF5I	GGATG	4 cut(s)	952, 988, 1006, 1162
BstFNI	CGCG	1 cut(s)	8
BstH2I	RGCGCY	1 cut(s)	883
BstHHI	GCGC	1 cut(s)	882
BstKTI	GATC	7 cut(s)	103, 320, 626, 803, 1108, 1154, 1225
BstMAI	GTCTC	1 cut(s)	135
BstMBI	GATC	7 cut(s)	100, 317, 623, 800, 1105, 1151, 1222
BstMWI	GCNNNNNNNGC	4 cut(s)	803, 812, 1055, 1095
BstSFI	CTRYAG	2 cut(s)	771, 1044
BstUI	CGCG	1 cut(s)	8
BstV1I	GCAGC	3 cut(s)	674, 824, 1202
BstV2I	GAAGAC	1 cut(s)	63
BstX2I	RGATCY	4 cut(s)	623, 800, 1105, 1222
BstYI	RGATCY	4 cut(s)	623, 800, 1105, 1222
BstZ17I	GTATAC	1 cut(s)	257
BsuI	GTATCC	1 cut(s)	321
BsuRI	GGCC	2 cut(s)	5, 1168
BtgZI	GCGATG	1 cut(s)	695
BtsCI	GGATG	4 cut(s)	952, 988, 1006, 1162
BtsIMutI	CAGTG	2 cut(s)	636, 1071
Cac8I	GCNNGC	6 cut(s)	24, 448, 636, 795, 1162, 1166
CaiI	CAGNNNCTG	2 cut(s)	1052, 1193
CfoI	GCGC	1 cut(s)	882
Cfr10I	RCCGGY	1 cut(s)	446
Cfr13I	GGNCC	1 cut(s)	68
Csp6I	GTAC	1 cut(s)	339
CviAII	CATG	1 cut(s)	416
CviQI	GTAC	1 cut(s)	339
DdeI	CTNAG	3 cut(s)	227, 378, 639
DpnI	GATC	7 cut(s)	102, 319, 625, 802, 1107, 1153, 1224
DpnII	GATC	7 cut(s)	100, 317, 623, 800, 1105, 1151, 1222
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	4 cut(s)	46, 108, 377, 428
EarI	CTCTTC	4 cut(s)	46, 108, 377, 428
Eco32I	GATATC	1 cut(s)	1040
Eco47I	GGWCC	1 cut(s)	68
Eco57I	CTGAAG	2 cut(s)	69, 804
EcoNI	CCTNNNNNAGG	1 cut(s)	161
EcoRI	GAATTC	1 cut(s)	264
EcoRV	GATATC	1 cut(s)	1040
FaeI	CATG	1 cut(s)	419
FalI	AAGNNNNNCTT	2 cut(s)	11, 43
FatI	CATG	1 cut(s)	415
FauI	CCCGC	2 cut(s)	31, 1073
FauNDI	CATATG	1 cut(s)	997
FbaI	TGATCA	1 cut(s)	100
FblI	GTMKAC	1 cut(s)	256
Fnu4HI	GCNGC	5 cut(s)	6, 477, 663, 813, 1191
FokI	GGATG	4 cut(s)	939, 993, 995, 1169
Fsp4HI	GCNGC	5 cut(s)	6, 477, 663, 813, 1191
FspBI	CTAG	3 cut(s)	635, 873, 1002
GlaI	GCGC	1 cut(s)	881
GluI	GCNGC	5 cut(s)	6, 477, 663, 813, 1191
GsaI	CCCAGC	1 cut(s)	1197
GsuI	CTGGAG	1 cut(s)	908
HaeII	RGCGCY	1 cut(s)	883
HaeIII	GGCC	2 cut(s)	5, 1168
HapII	CCGG	2 cut(s)	447, 1135
HhaI	GCGC	1 cut(s)	882
Hin1I	GRCGYC	1 cut(s)	348
Hin1II	CATG	1 cut(s)	419
Hin6I	GCGC	1 cut(s)	880
HinP1I	GCGC	1 cut(s)	880
HinfI	GANTC	6 cut(s)	128, 179, 187, 776, 968, 1138
HpaII	CCGG	2 cut(s)	447, 1135
HphI	GGTGA	3 cut(s)	311, 356, 887
Hpy166II	GTNNAC	3 cut(s)	257, 542, 895
Hpy188I	TCNGA	6 cut(s)	49, 381, 393, 781, 823, 1156
Hpy188III	TCNNGA	4 cut(s)	237, 269, 1121, 1149
Hpy8I	GTNNAC	3 cut(s)	257, 542, 895
Hpy99I	CGWCG	4 cut(s)	65, 68, 83, 98
HpyAV	CCTTC	4 cut(s)	8, 414, 556, 828
HpyCH4III	ACNGT	6 cut(s)	224, 338, 502, 631, 933, 1030
HpyCH4IV	ACGT	3 cut(s)	151, 348, 868
HpyCH4V	TGCA	4 cut(s)	201, 329, 806, 848
HpyF10VI	GCNNNNNNNGC	4 cut(s)	803, 812, 1055, 1095
HpyF3I	CTNAG	3 cut(s)	227, 378, 639
HpySE526I	ACGT	3 cut(s)	151, 348, 868
Hsp92I	GRCGYC	1 cut(s)	348
Hsp92II	CATG	1 cut(s)	419
HspAI	GCGC	1 cut(s)	880
KroI	GCCGGC	1 cut(s)	446
KroNI	GCCGGC	1 cut(s)	448
Ksp22I	TGATCA	1 cut(s)	100
Kzo9I	GATC	7 cut(s)	100, 317, 623, 800, 1105, 1151, 1222
LmnI	GCTCC	4 cut(s)	532, 659, 991, 1022
Lsp1109I	GCAGC	3 cut(s)	674, 824, 1202
LweI	GCATC	3 cut(s)	973, 1045, 1147
MaeI	CTAG	3 cut(s)	635, 873, 1002
MaeII	ACGT	3 cut(s)	151, 348, 868
MaeIII	GTNAC	3 cut(s)	344, 725, 927
MalI	GATC	7 cut(s)	102, 319, 625, 802, 1107, 1153, 1224
MboI	GATC	7 cut(s)	100, 317, 623, 800, 1105, 1151, 1222
MboII	GAAGA	7 cut(s)	33, 62, 65, 68, 125, 364, 445
MflI	RGATCY	4 cut(s)	623, 800, 1105, 1222
MhlI	GDGCHC	1 cut(s)	276
MlyI	GAGTC	1 cut(s)	137
MmeI	TCCRAC	4 cut(s)	162, 584, 862, 941
MroNI	GCCGGC	1 cut(s)	446
MseI	TTAA	3 cut(s)	284, 333, 692
MslI	CAYNNNNRTG	1 cut(s)	981
MspA1I	CMGCKG	1 cut(s)	1193
MspI	CCGG	2 cut(s)	447, 1135
Mva1269I	GAATGC	1 cut(s)	203
MvnI	CGCG	1 cut(s)	8
MwoI	GCNNNNNNNGC	4 cut(s)	803, 812, 1055, 1095
NaeI	GCCGGC	1 cut(s)	448
NdeI	CATATG	1 cut(s)	997
NdeII	GATC	7 cut(s)	100, 317, 623, 800, 1105, 1151, 1222
NgoMIV	GCCGGC	1 cut(s)	446
NheI	GCTAGC	1 cut(s)	634
NlaIII	CATG	1 cut(s)	419
NlaIV	GGNNCC	2 cut(s)	241, 1018
NmuCI	GTSAC	3 cut(s)	344, 725, 927
PctI	GAATGC	1 cut(s)	203
PdiI	GCCGGC	1 cut(s)	448
PfeI	GAWTC	5 cut(s)	179, 187, 776, 968, 1138
PkrI	GCNGC	5 cut(s)	7, 478, 664, 814, 1192
PleI	GAGTC	1 cut(s)	136
PpsI	GAGTC	1 cut(s)	136
Psp1406I	AACGTT	1 cut(s)	868
PspFI	CCCAGC	1 cut(s)	1193
PspN4I	GGNNCC	2 cut(s)	241, 1018
PspPI	GGNCC	1 cut(s)	68
PstNI	CAGNNNCTG	2 cut(s)	1052, 1193
PsuI	RGATCY	4 cut(s)	623, 800, 1105, 1222
PvuII	CAGCTG	1 cut(s)	1193
RsaI	GTAC	1 cut(s)	340
RsaNI	GTAC	1 cut(s)	339
RseI	CAYNNNNRTG	1 cut(s)	981
SaqAI	TTAA	3 cut(s)	284, 333, 692
SatI	GCNGC	5 cut(s)	6, 477, 663, 813, 1191
Sau3AI	GATC	7 cut(s)	100, 317, 623, 800, 1105, 1151, 1222
Sau96I	GGNCC	1 cut(s)	68
SchI	GAGTC	1 cut(s)	137
SduI	GDGCHC	1 cut(s)	276
SfaNI	GCATC	3 cut(s)	973, 1045, 1147
SfcI	CTRYAG	2 cut(s)	771, 1044
SinI	GGWCC	1 cut(s)	68
SmiMI	CAYNNNNRTG	1 cut(s)	981
SsiI	CCGC	4 cut(s)	6, 24, 476, 1066
SspMI	CTAG	3 cut(s)	635, 873, 1002
TaaI	ACNGT	6 cut(s)	224, 338, 502, 631, 933, 1030
TaiI	ACGT	3 cut(s)	154, 351, 871
TaqI	TCGA	3 cut(s)	120, 701, 943
TatI	WGTACW	1 cut(s)	338
TauI	GCSGC	2 cut(s)	8, 479
TfiI	GAWTC	5 cut(s)	179, 187, 776, 968, 1138
Tru1I	TTAA	3 cut(s)	284, 333, 692
Tru9I	TTAA	3 cut(s)	284, 333, 692
TscAI	CASTG	2 cut(s)	636, 1078
TseFI	GTSAC	3 cut(s)	344, 725, 927
TseI	GCWGC	3 cut(s)	662, 812, 1190
Tsp45I	GTSAC	3 cut(s)	344, 725, 927
TspDTI	ATGAA	6 cut(s)	377, 599, 627, 698, 734, 1163
TspGWI	ACGGA	1 cut(s)	81
TspRI	CASTG	2 cut(s)	636, 1078
VpaK11BI	GGWCC	1 cut(s)	68
XagI	CCTNNNNNAGG	1 cut(s)	161
XapI	RAATTY	3 cut(s)	231, 264, 945
XmiI	GTMKAC	1 cut(s)	256
XspI	CTAG	3 cut(s)	635, 873, 1002
ZraI	GACGTC	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.