Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004312

Physical Location & Seq

Genomic Coordinates Reverse (-)

10713240 .. 10716158

Gene Structure 2919 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0124600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1992 bp

ATGGCGGACATAGTGAAGCAAATCCTGGCGAGGCCGATCCAGCTGGCGGACCAAGTGACCAAGGCGGCAGACGAGGCCAGCTCGTCCAAGCAGGACTGCGCGGAGCTGAAATCGAAGACGGAGAAGCTGGCGGGTCTGCTACGGCAGGCCGCCCGGGCCAGCTCCGACCTCTACGAGCGGCCGACTCGGCGGATCATCGACGAGACTGAGCAGGTGCTCGAGAAGGCTCTGTCTTTAGTCCTGAAATGCCGCGCCAACGGGATAATGAAGCGGGTCTTCACCATAATCCCGGCGGCGCAGTTCCGGAAAATGTCGTCGCAGCTCGAGAATTCGATCGGCGACGTGTCGTGGCTGCTCAGAGTCTCGGCTCCCGCGGATATCCGGGAAGATGGGTACTTGGGCCTGCCGCCAATCGCGGCCAACGAGCCCATTCTCGGCCTCATTTGGGAGCAGATCGCTATTCTCCACACCGGTTCGCTCGAAGACCGATCCGACGCGGCGGCGTCGCTGGTTTCTTTAGCCAAGGATAACGATAGGTATGGAAAGCTGATTATTGAAGAAGGAGGAGTTGGGCCCTTGTTAAAATTGATCAAAGAGGGAAAGGTTGAAGGCCAAGAGAACGCTGCTGAGGCTCTCGGGTTACTGGGCCGGGACCCCGAAAGCGTGGAGCACATGATCATTGCCGGAGTGTGCTCGGTGTTTTCCAAGATTCTGAAAGAAGGGCCGATGAAAGTTCAGGCGATGGTGGCGAAGGCGGTCGCGGAGCTAGCAGGGCATTACCCGAAATGCCAGGATCTGTTTGCGCAGCACAACATTATTCGATTGCTTGTGAGTCATCTTGCTTTCGAGACAGTCCAGGAGCATAGTAAGTACAGTGTGACTTTTAACAAGGCCACATCGATTCATGCTCTTGTTGTGGCTACTAATAATTCTAATGCAAATAATATTCCGACGAAGGCGATTGAGGATGAGGAGAAGCAGAGTTATATGCAGATTCCTCATCCTTTGGGGAATCGGCAGCCGAGTCAGCTGCACACTGTGGTTACTACTACTATGGCAATGCAGGGAGGAGGAGGAGGGACTAAGGCTCCTCTACAACCGGTTAATGGCGCTAATGGGGCGACCCAAATCAATCATACCAAGAGCAATAGCAGCAGCAATTTATCCCATCATAATTCAGGAACAAGCGTTAAGGGAAGGGAATCGGAGGACCCTGCAACCAAGGCCAGTATGAAAGCGATGGCAGCACGAGCACTTGGGCACCTAGCCAAGGGGAATTCCACCATTTGTCGTAGCATTACGGAATCAAGAGCGCTCTTGTGTTTTGCAGTGCTATTGGAAAAGGGCCTTGAAGATGTGCAGAAGTATTCTGCCATGGCGTTGATGGAGATAACAGGAGTGGCAGAGAAAGATGCCGAGTTGAGAAGATCAGCATTCAAGCCTAATTCCCCTGCCTGCAAGTCTGTCATTGATCAATTGCTAAAGATCATTGACAAGGCAGATTCGGACTCAGACCTCCTGATCCCCTGCATCAAAGCAGTTGGGAATTTGGCCAGGACATTTCGGGCAACGGAGACAAGGATCATTGGCCCATTGGTGCGCCTTCTGGATGAACGAGAAGCCGAGGTTACCAGGGAAGCCTCCATTGCCCTCACAAAGTTCGCCTGTACAGATAACTATCTTCACCTCGACCACTGCAAGGCAATAATAGATGCTGGAGGCGCCAAGCACTTAATCCAGCTCGTGTATTTTGGGGAACAAATGGTGCAGATTTCGGCTCTGGTTCTCATGTGCTACATTGCACTCCATGTACCGGACAGCGAAGAACTTGCCCAGGCTGAGGTGCTCACTGTGCTTGAATGGGCATCCAAGCAATCTTACATGACCCAAGATGAGACTCTTGACACATTGTTACAAGAGGCTAAGAGTAGATTGGATCTTTACCAGTCCAGGGGCTCAAGGGGATACCATGGATTCAATCACAAAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009889 GO:0009909 GO:0009911 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAP

Protein Analysis

663

Amino Acids

72.11

Weight (kDa)

6.57

Isoelectric Point (pI)

40.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7792	PF25055	6 - 122	4.7e-54	Domain of unknown function (DUF7792)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66840 AT5G66840
fragaria_vesca	FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670
malus_domestica	MD02G1168400.v1.1
prunus_persica	Prupe.7G136600_v2.0.a1 Prupe.7G136600_v2.0.a1 Prupe.7G136600_v2.0.a1
pyrus_communis	pycom02g13550 pycom15g24350 pycom15g24360
rosa_chinensis	RchiOBHm_Chr2g0104981
rosa_laevigata	RLG00000017385
rosa_multiflora	Rmu_sc0000641.1_g000032
rosa_roxburghii	Rroxscaffold_2G00138610
rosa_rugosa	Rorug02G0124300 Rorug02G0124400 Rorug02G0124500 Rorug02G0124600 Rorug02G0124700 Rorug02G0124800
rosa_samantha	Rh2AG175100 Rh2CG179700 Rh2DG181500
rosa_wichuraiana	Rw2G013760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	202
Acc16I	TGCGCA	1 cut(s)	804
Acc36I	ACCTGC	1 cut(s)	202
AccB1I	GGYRCC	2 cut(s)	1260, 1721
AccBSI	CCGCTC	1 cut(s)	178
AccII	CGCG	6 cut(s)	101, 252, 374, 416, 497, 761
AccIII	TCCGGA	1 cut(s)	303
AclWI	GGATC	7 cut(s)	31, 200, 483, 801, 1516, 1589, 1944
AcoI	YGGCCR	3 cut(s)	179, 417, 1551
AcsI	RAATTY	3 cut(s)	328, 1276, 1546
AcyI	GRCGYC	2 cut(s)	503, 1722
AdeI	CACNNNGTG	1 cut(s)	1039
AfaI	GTAC	4 cut(s)	395, 872, 1669, 1812
AfeI	AGCGCT	1 cut(s)	1314
AfiI	CCNNNNNNNGG	9 cut(s)	46, 434, 445, 1106, 1270, 1699, 1813, 1840, 1951
AflIII	ACRYGT	1 cut(s)	342
AgeI	ACCGGT	2 cut(s)	470, 1099
AgsI	TTSAA	6 cut(s)	557, 608, 1352, 1438, 1859, 1978
AjiI	CACGTC	1 cut(s)	343
AjnI	CCWGG	7 cut(s)	24, 789, 855, 1553, 1631, 1833, 1949
AjuI	GAANNNNNNNTTGG	2 cut(s)	552, 584
Alw21I	GWGCWC	5 cut(s)	219, 672, 695, 1255, 1848
Alw26I	GTCTC	5 cut(s)	197, 367, 842, 1568, 1889
AlwI	GGATC	7 cut(s)	31, 200, 483, 801, 1516, 1589, 1944
AlwNI	CAGNNNCTG	1 cut(s)	796
Ama87I	CYCGRG	4 cut(s)	153, 218, 323, 635
Aor13HI	TCCGGA	1 cut(s)	303
Aor51HI	AGCGCT	1 cut(s)	1314
ApaI	GGGCCC	1 cut(s)	576
ApeKI	GCWGC	9 cut(s)	319, 352, 623, 805, 1018, 1030, 1152, 1155, 1244
ApoI	RAATTY	3 cut(s)	328, 1276, 1546
AsiGI	ACCGGT	2 cut(s)	470, 1099
AspLEI	GCGC	8 cut(s)	101, 254, 298, 805, 1112, 1315, 1602, 1724
AsuC2I	CCSGG	5 cut(s)	154, 155, 290, 383, 650
AsuHPI	GGTGA	2 cut(s)	271, 1676
AsuNHI	GCTAGC	1 cut(s)	766
AvaI	CYCGRG	4 cut(s)	153, 218, 323, 635
AvaII	GGWCC	3 cut(s)	49, 652, 1210
BaeGI	GKGCMC	2 cut(s)	576, 1263
BalI	TGGCCA	1 cut(s)	1553
BanI	GGYRCC	2 cut(s)	1260, 1721
BanII	GRGCYC	3 cut(s)	429, 576, 1958
BauI	CACGAG	2 cut(s)	1248, 1742
BbsI	GAAGAC	3 cut(s)	122, 268, 489
Bbv12I	GWGCWC	5 cut(s)	219, 672, 695, 1255, 1848
BbvCI	CCTCAGC	2 cut(s)	627, 1839
BbvI	GCAGC	9 cut(s)	331, 339, 610, 817, 1017, 1030, 1164, 1167, 1256
BccI	CCATC	5 cut(s)	383, 736, 1176, 1234, 1378
BceAI	ACGGC	1 cut(s)	158
BcgI	CGANNNNNNTGC	4 cut(s)	1012, 1046, 1811, 1845
BciT130I	CCWGG	7 cut(s)	26, 791, 857, 1555, 1633, 1835, 1951
BciVI	GTATCC	1 cut(s)	1958
BclI	TGATCA	3 cut(s)	588, 675, 1471
BcnI	CCSGG	5 cut(s)	154, 155, 290, 383, 650
BcoDI	GTCTC	5 cut(s)	197, 367, 842, 1568, 1889
BfaI	CTAG	2 cut(s)	767, 1265
BfoI	RGCGCY	3 cut(s)	1113, 1316, 1725
BfuAI	ACCTGC	1 cut(s)	202
BfuI	GTATCC	1 cut(s)	1958
BglI	GCCNNNNNGGC	2 cut(s)	155, 187
Bme18I	GGWCC	3 cut(s)	49, 652, 1210
BmeT110I	CYCGRG	4 cut(s)	153, 218, 323, 635
BmgBI	CACGTC	1 cut(s)	343
BmiI	GGNNCC	8 cut(s)	369, 574, 653, 654, 1089, 1212, 1262, 1723
BmrI	ACTGGG	1 cut(s)	653
BmsI	GCATC	4 cut(s)	1402, 1539, 1702, 1874
BmtI	GCTAGC	1 cut(s)	770
BmuI	ACTGGG	1 cut(s)	653
BpiI	GAAGAC	3 cut(s)	122, 268, 489
BplI	GAGNNNNNCTC	2 cut(s)	65, 97
BpmI	CTGGAG	1 cut(s)	1737
Bpu10I	CCTNAGC	2 cut(s)	627, 1839
BpuEI	CTTGAG	1 cut(s)	1942
BpuMI	CCSGG	5 cut(s)	154, 155, 290, 383, 650
Bsa29I	ATCGAT	1 cut(s)	899
BsaBI	GATNNNNATC	1 cut(s)	1677
BsaHI	GRCGYC	2 cut(s)	503, 1722
BsaWI	WCCGGW	4 cut(s)	303, 470, 1099, 1813
BsaXI	ACNNNNNCTCC	2 cut(s)	1072, 1102
Bsc4I	CCNNNNNNNGG	9 cut(s)	46, 434, 445, 1106, 1270, 1699, 1813, 1840, 1951
Bse118I	RCCGGY	2 cut(s)	470, 1099
Bse1I	ACTGG	3 cut(s)	648, 1227, 1945
Bse3DI	GCAATG	4 cut(s)	678, 1065, 1644, 1797
Bse8I	GATNNNNATC	1 cut(s)	1677
BseAI	TCCGGA	1 cut(s)	303
BseBI	CCWGG	7 cut(s)	26, 791, 857, 1555, 1633, 1835, 1951
BseCI	ATCGAT	1 cut(s)	899
BseGI	GGATG	4 cut(s)	973, 1000, 1615, 1865
BseJI	GATNNNNATC	1 cut(s)	1677
BseLI	CCNNNNNNNGG	9 cut(s)	46, 434, 445, 1106, 1270, 1699, 1813, 1840, 1951
BseMI	GCAATG	4 cut(s)	678, 1065, 1644, 1797
BseMII	CTCAG	5 cut(s)	198, 370, 618, 1524, 1830
BseNI	ACTGG	3 cut(s)	648, 1227, 1945
BseRI	GAGGAG	6 cut(s)	579, 986, 1080, 1083, 1086, 1089
BseSI	GKGCMC	2 cut(s)	576, 1263
BseX3I	CGGCCG	1 cut(s)	179
BseXI	GCAGC	9 cut(s)	331, 339, 610, 817, 1017, 1030, 1164, 1167, 1256
BsgI	GTGCAG	3 cut(s)	1016, 1379, 1787
Bsh1236I	CGCG	6 cut(s)	101, 252, 374, 416, 497, 761
Bsh1285I	CGRYCG	3 cut(s)	182, 336, 759
BshNI	GGYRCC	2 cut(s)	1260, 1721
BshTI	ACCGGT	2 cut(s)	470, 1099
BshVI	ATCGAT	1 cut(s)	899
BsiEI	CGRYCG	3 cut(s)	182, 336, 759
BsiHKAI	GWGCWC	5 cut(s)	219, 672, 695, 1255, 1848
BsiHKCI	CYCGRG	4 cut(s)	153, 218, 323, 635
BsiSI	CCGG	9 cut(s)	154, 290, 304, 382, 471, 649, 684, 1100, 1814
BslFI	GGGAC	2 cut(s)	665, 1093
BslI	CCNNNNNNNGG	9 cut(s)	46, 434, 445, 1106, 1270, 1699, 1813, 1840, 1951
BsmAI	GTCTC	5 cut(s)	197, 367, 842, 1568, 1889
BsmFI	GGGAC	2 cut(s)	665, 1093
BsmI	GAATGC	1 cut(s)	1433
BsoBI	CYCGRG	4 cut(s)	153, 218, 323, 635
Bsp120I	GGGCCC	1 cut(s)	572
Bsp1286I	GDGCHC	9 cut(s)	219, 429, 576, 672, 695, 1255, 1263, 1848, 1958
Bsp13I	TCCGGA	1 cut(s)	303
Bsp1407I	TGTACA	1 cut(s)	1667
Bsp19I	CCATGG	2 cut(s)	1374, 1969
BspCNI	CTCAG	5 cut(s)	199, 369, 619, 1523, 1831
BspDI	ATCGAT	1 cut(s)	899
BspEI	TCCGGA	1 cut(s)	303
BspFNI	CGCG	6 cut(s)	101, 252, 374, 416, 497, 761
BspLI	GGNNCC	8 cut(s)	369, 574, 653, 654, 1089, 1212, 1262, 1723
BspMI	ACCTGC	1 cut(s)	202
BspOI	GCTAGC	1 cut(s)	770
BspPI	GGATC	7 cut(s)	31, 200, 483, 801, 1516, 1589, 1944
BspT107I	GGYRCC	2 cut(s)	1260, 1721
BsrBI	CCGCTC	1 cut(s)	178
BsrDI	GCAATG	4 cut(s)	678, 1065, 1644, 1797
BsrFI	RCCGGY	2 cut(s)	470, 1099
BsrGI	TGTACA	1 cut(s)	1667
BsrI	ACTGG	3 cut(s)	648, 1227, 1945
BssAI	RCCGGY	2 cut(s)	470, 1099
BssNI	GRCGYC	2 cut(s)	503, 1722
BssSI	CACGAG	2 cut(s)	1248, 1742
BssT1I	CCWWGG	6 cut(s)	60, 522, 1221, 1269, 1374, 1969
Bst2BI	CACGAG	2 cut(s)	1248, 1742
Bst2UI	CCWGG	7 cut(s)	26, 791, 857, 1555, 1633, 1835, 1951
Bst4CI	ACNGT	4 cut(s)	853, 875, 1039, 1852
BstACI	GRCGYC	2 cut(s)	503, 1722
BstAUI	TGTACA	1 cut(s)	1667
BstC8I	GCNNGC	8 cut(s)	45, 79, 129, 147, 160, 404, 768, 1456
BstDEI	CTNAG	7 cut(s)	207, 356, 627, 1083, 1510, 1839, 1923
BstDSI	CCRYGG	3 cut(s)	372, 1374, 1969
BstEII	GGTNACC	1 cut(s)	1627
BstENI	CCTNNNNNAGG	1 cut(s)	1268
BstF5I	GGATG	4 cut(s)	973, 1000, 1615, 1865
BstFNI	CGCG	6 cut(s)	101, 252, 374, 416, 497, 761
BstH2I	RGCGCY	3 cut(s)	1113, 1316, 1725
BstHHI	GCGC	8 cut(s)	101, 254, 298, 805, 1112, 1315, 1602, 1724
BstMAI	GTCTC	5 cut(s)	197, 367, 842, 1568, 1889
BstMCI	CGRYCG	3 cut(s)	182, 336, 759
BstNI	CCWGG	7 cut(s)	26, 791, 857, 1555, 1633, 1835, 1951
BstPI	GGTNACC	1 cut(s)	1627
BstSLI	GKGCMC	2 cut(s)	576, 1263
BstUI	CGCG	6 cut(s)	101, 252, 374, 416, 497, 761
BstV1I	GCAGC	9 cut(s)	331, 339, 610, 817, 1017, 1030, 1164, 1167, 1256
BstV2I	GAAGAC	3 cut(s)	122, 268, 489
BstX2I	RGATCY	2 cut(s)	793, 1936
BstYI	RGATCY	2 cut(s)	793, 1936
BstZI	CGGCCG	1 cut(s)	179
Bsu15I	ATCGAT	1 cut(s)	899
BsuI	GTATCC	1 cut(s)	1958
BsuTUI	ATCGAT	1 cut(s)	899
BtgI	CCRYGG	3 cut(s)	372, 1374, 1969
BtgZI	GCGATG	2 cut(s)	755, 1253
BtrI	CACGTC	1 cut(s)	343
BtsCI	GGATG	4 cut(s)	973, 1000, 1615, 1865
BtsI	GCAGTG	2 cut(s)	1335, 1693
BtsIMutI	CAGTG	5 cut(s)	880, 1035, 1335, 1693, 1848
BveI	ACCTGC	1 cut(s)	202
Cac8I	GCNNGC	8 cut(s)	45, 79, 129, 147, 160, 404, 768, 1456
CaiI	CAGNNNCTG	1 cut(s)	796
CfoI	GCGC	8 cut(s)	101, 254, 298, 805, 1112, 1315, 1602, 1724
Cfr10I	RCCGGY	2 cut(s)	470, 1099
Cfr42I	CCGCGG	1 cut(s)	375
Cfr9I	CCCGGG	1 cut(s)	153
ClaI	ATCGAT	1 cut(s)	899
CseI	GACGC	2 cut(s)	492, 503
Csp6I	GTAC	4 cut(s)	394, 871, 1668, 1811
CspAI	ACCGGT	2 cut(s)	470, 1099
CviAII	CATG	7 cut(s)	673, 905, 1375, 1789, 1808, 1882, 1970
CviQI	GTAC	4 cut(s)	394, 871, 1668, 1811
DdeI	CTNAG	7 cut(s)	207, 356, 627, 1083, 1510, 1839, 1923
DinI	GGCGCC	1 cut(s)	1723
DraIII	CACNNNGTG	1 cut(s)	1039
EaeI	YGGCCR	3 cut(s)	179, 417, 1551
EagI	CGGCCG	1 cut(s)	179
EciI	GGCGGA	3 cut(s)	20, 62, 205
EclXI	CGGCCG	1 cut(s)	179
Eco130I	CCWWGG	6 cut(s)	60, 522, 1221, 1269, 1374, 1969
Eco24I	GRGCYC	3 cut(s)	429, 576, 1958
Eco32I	GATATC	1 cut(s)	379
Eco47I	GGWCC	3 cut(s)	49, 652, 1210
Eco47III	AGCGCT	1 cut(s)	1314
Eco52I	CGGCCG	1 cut(s)	179
Eco88I	CYCGRG	4 cut(s)	153, 218, 323, 635
Eco91I	GGTNACC	1 cut(s)	1627
EcoNI	CCTNNNNNAGG	1 cut(s)	1268
EcoO109I	RGGNCCY	4 cut(s)	573, 652, 1210, 1345
EcoO65I	GGTNACC	1 cut(s)	1627
EcoRI	GAATTC	2 cut(s)	328, 1276
EcoRII	CCWGG	7 cut(s)	24, 789, 855, 1553, 1631, 1833, 1949
EcoRV	GATATC	1 cut(s)	379
EcoT14I	CCWWGG	6 cut(s)	60, 522, 1221, 1269, 1374, 1969
EcoT38I	GRGCYC	3 cut(s)	429, 576, 1958
EgeI	GGCGCC	1 cut(s)	1723
EheI	GGCGCC	1 cut(s)	1723
ErhI	CCWWGG	6 cut(s)	60, 522, 1221, 1269, 1374, 1969
FaeI	CATG	7 cut(s)	676, 908, 1378, 1792, 1811, 1885, 1973
FalI	AAGNNNNNCTT	2 cut(s)	260, 292
FaqI	GGGAC	2 cut(s)	665, 1093
FatI	CATG	7 cut(s)	672, 904, 1374, 1788, 1807, 1881, 1969
FauI	CCCGC	3 cut(s)	124, 264, 379
FbaI	TGATCA	3 cut(s)	588, 675, 1471
FokI	GGATG	4 cut(s)	980, 987, 1622, 1852
FriOI	GRGCYC	3 cut(s)	429, 576, 1958
FspBI	CTAG	2 cut(s)	767, 1265
FspI	TGCGCA	1 cut(s)	804
GlaI	GCGC	8 cut(s)	100, 253, 297, 804, 1111, 1314, 1601, 1723
GsuI	CTGGAG	1 cut(s)	1737
HaeII	RGCGCY	3 cut(s)	1113, 1316, 1725
HapII	CCGG	9 cut(s)	154, 290, 304, 382, 471, 649, 684, 1100, 1814
HgaI	GACGC	2 cut(s)	492, 503
HhaI	GCGC	8 cut(s)	101, 254, 298, 805, 1112, 1315, 1602, 1724
Hin1I	GRCGYC	2 cut(s)	503, 1722
Hin1II	CATG	7 cut(s)	676, 908, 1378, 1792, 1811, 1885, 1973
Hin6I	GCGC	8 cut(s)	99, 252, 296, 803, 1110, 1313, 1600, 1722
HinP1I	GCGC	8 cut(s)	99, 252, 296, 803, 1110, 1313, 1600, 1722
HpaII	CCGG	9 cut(s)	154, 290, 304, 382, 471, 649, 684, 1100, 1814
HphI	GGTGA	2 cut(s)	271, 1676
Hpy188I	TCNGA	8 cut(s)	166, 359, 493, 714, 951, 1207, 1507, 1513
Hpy99I	CGWCG	6 cut(s)	203, 319, 344, 497, 508, 955
HpyAV	CCTTC	8 cut(s)	217, 554, 602, 713, 745, 949, 1191, 1613
HpyCH4III	ACNGT	4 cut(s)	853, 875, 1039, 1852
HpyCH4IV	ACGT	1 cut(s)	342
HpyF3I	CTNAG	7 cut(s)	207, 356, 627, 1083, 1510, 1839, 1923
HpySE526I	ACGT	1 cut(s)	342
Hsp92I	GRCGYC	2 cut(s)	503, 1722
Hsp92II	CATG	7 cut(s)	676, 908, 1378, 1792, 1811, 1885, 1973
HspAI	GCGC	8 cut(s)	99, 252, 296, 803, 1110, 1313, 1600, 1722
KasI	GGCGCC	1 cut(s)	1721
KflI	GGGWCCC	1 cut(s)	652
Kpn2I	TCCGGA	1 cut(s)	303
Ksp22I	TGATCA	3 cut(s)	588, 675, 1471
KspI	CCGCGG	1 cut(s)	375
LmnI	GCTCC	8 cut(s)	103, 167, 373, 448, 667, 763, 859, 1093
Lsp1109I	GCAGC	9 cut(s)	331, 339, 610, 817, 1017, 1030, 1164, 1167, 1256
LweI	GCATC	4 cut(s)	1402, 1539, 1702, 1874
MaeI	CTAG	2 cut(s)	767, 1265
MaeII	ACGT	1 cut(s)	342
MaeIII	GTNAC	6 cut(s)	55, 639, 877, 1042, 1627, 1911
MbiI	CCGCTC	1 cut(s)	178
MboII	GAAGA	9 cut(s)	127, 268, 398, 494, 569, 1364, 1437, 1673, 1835
MfeI	CAATTG	1 cut(s)	1475
MflI	RGATCY	2 cut(s)	793, 1936
MhlI	GDGCHC	9 cut(s)	219, 429, 576, 672, 695, 1255, 1263, 1848, 1958
MlsI	TGGCCA	1 cut(s)	1553
MluCI	AATT	9 cut(s)	328, 584, 928, 1159, 1174, 1276, 1444, 1475, 1546
MluNI	TGGCCA	1 cut(s)	1553
Mly113I	GGCGCC	1 cut(s)	1722
MlyI	GAGTC	6 cut(s)	178, 369, 841, 1033, 1502, 1891
MmeI	TCCRAC	3 cut(s)	189, 516, 974
Mox20I	TGGCCA	1 cut(s)	1553
MroI	TCCGGA	1 cut(s)	303
MscI	TGGCCA	1 cut(s)	1553
MseI	TTAA	5 cut(s)	581, 885, 1104, 1191, 1733
Msp20I	TGGCCA	1 cut(s)	1553
MspA1I	CMGCKG	3 cut(s)	43, 374, 1030
MspI	CCGG	9 cut(s)	154, 290, 304, 382, 471, 649, 684, 1100, 1814
MunI	CAATTG	1 cut(s)	1475
Mva1269I	GAATGC	1 cut(s)	1433
MvaI	CCWGG	7 cut(s)	26, 791, 857, 1555, 1633, 1835, 1951
MvnI	CGCG	6 cut(s)	101, 252, 374, 416, 497, 761
NarI	GGCGCC	1 cut(s)	1722
NciI	CCSGG	5 cut(s)	154, 155, 290, 383, 650
NcoI	CCATGG	2 cut(s)	1374, 1969
NheI	GCTAGC	1 cut(s)	766
NlaIII	CATG	7 cut(s)	676, 908, 1378, 1792, 1811, 1885, 1973
NlaIV	GGNNCC	8 cut(s)	369, 574, 653, 654, 1089, 1212, 1262, 1723
NmeAIII	GCCGAG	6 cut(s)	166, 344, 414, 1047, 1441, 1648
NmuCI	GTSAC	2 cut(s)	55, 877
NsbI	TGCGCA	1 cut(s)	804
PaeR7I	CTCGAG	2 cut(s)	218, 323
PaqCI	CACCTGC	1 cut(s)	202
PcsI	WCGNNNNNNNCGW	1 cut(s)	420
PctI	GAATGC	1 cut(s)	1433
PfeI	GAWTC	8 cut(s)	709, 901, 994, 1012, 1202, 1304, 1502, 1974
PfoI	TCCNGGA	2 cut(s)	381, 855
PinAI	ACCGGT	2 cut(s)	470, 1099
Ple19I	CGATCG	1 cut(s)	336
PleI	GAGTC	6 cut(s)	178, 368, 840, 1032, 1502, 1891
PluTI	GGCGCC	1 cut(s)	1725
PpsI	GAGTC	6 cut(s)	178, 368, 840, 1032, 1502, 1891
PpuMI	RGGWCCY	2 cut(s)	652, 1210
Psp5II	RGGWCCY	2 cut(s)	652, 1210
Psp6I	CCWGG	7 cut(s)	24, 789, 855, 1553, 1631, 1833, 1949
PspEI	GGTNACC	1 cut(s)	1627
PspGI	CCWGG	7 cut(s)	24, 789, 855, 1553, 1631, 1833, 1949
PspN4I	GGNNCC	8 cut(s)	369, 574, 653, 654, 1089, 1212, 1262, 1723
PspOMI	GGGCCC	1 cut(s)	572
PspPPI	RGGWCCY	2 cut(s)	652, 1210
PstNI	CAGNNNCTG	1 cut(s)	796
PsuI	RGATCY	2 cut(s)	793, 1936
PvuI	CGATCG	1 cut(s)	336
PvuII	CAGCTG	2 cut(s)	43, 1030
RsaI	GTAC	4 cut(s)	395, 872, 1669, 1812
RsaNI	GTAC	4 cut(s)	394, 871, 1668, 1811
SacII	CCGCGG	1 cut(s)	375
SaqAI	TTAA	5 cut(s)	581, 885, 1104, 1191, 1733
SchI	GAGTC	6 cut(s)	178, 369, 841, 1033, 1502, 1891
SduI	GDGCHC	9 cut(s)	219, 429, 576, 672, 695, 1255, 1263, 1848, 1958
SfaNI	GCATC	4 cut(s)	1402, 1539, 1702, 1874
SfiI	GGCCNNNNNGGCC	1 cut(s)	155
SfoI	GGCGCC	1 cut(s)	1723
Sfr274I	CTCGAG	2 cut(s)	218, 323
Sfr303I	CCGCGG	1 cut(s)	375
SgrBI	CCGCGG	1 cut(s)	375
SinI	GGWCC	3 cut(s)	49, 652, 1210
SlaI	CTCGAG	2 cut(s)	218, 323
SmaI	CCCGGG	1 cut(s)	155
SmlI	CTYRAG	3 cut(s)	218, 323, 1957
SmoI	CTYRAG	3 cut(s)	218, 323, 1957
SrfI	GCCCGGGC	1 cut(s)	155
Sse9I	AATT	9 cut(s)	328, 584, 928, 1159, 1174, 1276, 1444, 1475, 1546
SspDI	GGCGCC	1 cut(s)	1721
SspI	AATATT	1 cut(s)	946
SspMI	CTAG	2 cut(s)	767, 1265
StyI	CCWWGG	6 cut(s)	60, 522, 1221, 1269, 1374, 1969
TaaI	ACNGT	4 cut(s)	853, 875, 1039, 1852
TaiI	ACGT	1 cut(s)	345
TaqII	GACCGA	1 cut(s)	501
TasI	AATT	9 cut(s)	328, 584, 928, 1159, 1174, 1276, 1444, 1475, 1546
TatI	WGTACW	2 cut(s)	870, 1667
TauI	GCSGC	9 cut(s)	68, 152, 181, 252, 296, 409, 419, 500, 503
TfiI	GAWTC	8 cut(s)	709, 901, 994, 1012, 1202, 1304, 1502, 1974
Tru1I	TTAA	5 cut(s)	581, 885, 1104, 1191, 1733
Tru9I	TTAA	5 cut(s)	581, 885, 1104, 1191, 1733
TscAI	CASTG	5 cut(s)	880, 1042, 1335, 1700, 1855
TseFI	GTSAC	2 cut(s)	55, 877
TseI	GCWGC	9 cut(s)	319, 352, 623, 805, 1018, 1030, 1152, 1155, 1244
Tsp45I	GTSAC	2 cut(s)	55, 877
TspDTI	ATGAA	5 cut(s)	281, 743, 893, 1247, 1626
TspGWI	ACGGA	3 cut(s)	134, 1316, 1586
TspMI	CCCGGG	1 cut(s)	153
TspRI	CASTG	5 cut(s)	880, 1042, 1335, 1700, 1855
VpaK11BI	GGWCC	3 cut(s)	49, 652, 1210
XagI	CCTNNNNNAGG	1 cut(s)	1268
XapI	RAATTY	3 cut(s)	328, 1276, 1546
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1381
XhoI	CTCGAG	2 cut(s)	218, 323
XmaI	CCCGGG	1 cut(s)	153
XspI	CTAG	2 cut(s)	767, 1265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.