Prupe.7G136600_v2.0.a1

zinc finger CCCH domain-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
Physical Location & Seq
Reverse (-)
15378919 .. 15383051
4133 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G136600.3

Sequence Viewer

Length: 1488 bp
ATGGCCGGCAGGGAAGGTACGCGCGCTTTTATTTGCATCTCTTCGTCTTCTGAAGAAGAAGAAGACGACGACAGCGACCAAGTAGAAGACAGCGGCACAGAAGAAGAAGAAGATGATGGCGACGATGAAGACGACGAAGGTGACGACTATGATGATGAGCAAATTGAGGAGGCCGATGACGAGGCTCTCTCCAACAAAGTGATCCGCTCTCTCAAAGAAGGGAGTGATTTGGATTCTTTAAATCTCAAAGAGTGCAAAGCATATTTGCGGAGGAACGGCCTTAGAATATCTGGAACCAAATCTGTTTGTATACAAAGAATCGAAGAGCACCAGAGATTGAAAGATGGAAATGGTGAAGCACTTTACCCTAAATCATCCTTTGTAGTTAATTGTACAGGTGATGTCTGCAAGGGAGATGTCGTGCTCTTCACCCAGAAAGTTTATGAGAAATTTGATAAAGTGACAAGGCACGGAAGGATTCTAGGGAAGAGAACTGTTGCTGGCAGGGTTGTCAAAGAAAGCTATGGTGCAGCCAAACAACAACATACTTTTACGGTTGAAGTGCTGTGGAGCAGGGGAATAAAGAAGCTGTGCCCTCTATTTCCTTTGCTTGTGAAGGGTCGTAATCTCTATAGATTGAGAACCTTTAGACAGCGCTGGAGTAATGAAGCTGAAAGATCAAAAGTGCTTGCTGAGAAGCACAGACGAGGTGAAGCAGCAAGACGTGTCAGAGCAATGAAAAAATCGAAGAAATCAGCTGCAAATGGAGGTGTGAAACGTCAGAAGCAATCACATTTTACCAGACCAAATCAAATTAGGAAAAACAATGAATCAGAAAAGGGAAAGCATTTGGATAGACTCCAAAAAAGGACATCCCATGGATCTTTCTGTCAACATCGAGCAGCCCTACCATCAAAACAGCTGACTTTGCAACCAAGTGCAATGAGTAAAGCCTCTCAATGTTTTAGTAGGCATCAGAATCCAGCTTGCTTTAATATTGATAGAGTTCCAGCTCTTCATTCACAGGCTGTCCCTCAAATACCTCTCCAATCTCAACTAGAATTTCAACACAGGAGTGCACCTTTCCAGTCTTTTAGTCATGCCATGAACTCGAATTCAACCATGTTGAGATATCCTGTAACAACTAATGTTGATACACTTATTGCACCTGCCTCACAATTTCAGAGGTTCCGTAACAGCAGTTATAGCCACAATGGTTATGTACTTCCTGGCCACAATCTTGAAAATTGGGATCATTTACCAGGTGTGAATTTTGGCAGGCGATTTCATCCCTATAGTTCAGGAGCTGACACAAATGGACAGATGAGGATGGGACTTACAGAGTTGTATGTGTCTTGCTCTCATTTCATTTATGTCATATCCCTAGACGTCCCTTGTCCCCACTCCCTACAGCTACTAGTTGGGCAGGGAGGGAACCTTGGTTGCATCATCCAAGTAACTTTAATCGCTTGCGGGTCCGTTGAATGA

Protein Analysis

496

Amino Acids

55.75

Weight (kDa)

8.67

Isoelectric Point (pI)

53.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1177
AatII GACGTC 1 cut(s) 1392
Acc36I ACCTGC 1 cut(s) 1177
AccBSI CCGCTC 1 cut(s) 207
AccI GTMKAC 1 cut(s) 310
AccII CGCG 2 cut(s) 22, 24
AciI CCGC 4 cut(s) 93, 205, 268, 1473
AclWI GGATC 3 cut(s) 196, 889, 1260
AcoI YGGCCR 2 cut(s) 3, 1231
AcsI RAATTY 4 cut(s) 449, 1061, 1114, 1270
AcuI CTGAAG 1 cut(s) 72
AcyI GRCGYC 1 cut(s) 1389
AfaI GTAC 3 cut(s) 19, 394, 1224
AfeI AGCGCT 1 cut(s) 656
AflIII ACRYGT 1 cut(s) 724
AgsI TTSAA 6 cut(s) 340, 560, 1067, 1119, 1244, 1484
AhlI ACTAGT 1 cut(s) 1417
AjiI CACGTC 1 cut(s) 725
AjnI CCWGG 2 cut(s) 1228, 1261
AleI CACNNNNGTG 1 cut(s) 1074
AluBI AGCT 9 cut(s) 522, 589, 671, 758, 922, 986, 1013, 1307, 1414
AluI AGCT 9 cut(s) 522, 589, 671, 758, 922, 986, 1013, 1307, 1414
Alw21I GWGCWC 3 cut(s) 330, 426, 1081
Alw44I GTGCAC 1 cut(s) 1077
AlwI GGATC 3 cut(s) 196, 889, 1260
AlwNI CAGNNNCTG 1 cut(s) 1307
Aor51HI AGCGCT 1 cut(s) 656
AoxI GGCC 4 cut(s) 3, 171, 277, 1231
ApaLI GTGCAC 1 cut(s) 1077
ApeKI GCWGC 4 cut(s) 530, 716, 758, 902
ApoI RAATTY 4 cut(s) 449, 1061, 1114, 1270
AspLEI GCGC 3 cut(s) 24, 26, 657
AspS9I GGNCC 1 cut(s) 1476
AsuHPI GGTGA 5 cut(s) 152, 365, 410, 421, 722
AvaII GGWCC 1 cut(s) 1476
BaeGI GKGCMC 2 cut(s) 596, 1081
BalI TGGCCA 1 cut(s) 1233
BbsI GAAGAC 4 cut(s) 39, 69, 93, 135
Bbv12I GWGCWC 3 cut(s) 330, 426, 1081
BbvI GCAGC 4 cut(s) 542, 728, 745, 914
BccI CCATC 4 cut(s) 110, 338, 919, 1324
BceAI ACGGC 1 cut(s) 292
BciT130I CCWGG 2 cut(s) 1230, 1263
BcuI ACTAGT 1 cut(s) 1417
BfaI CTAG 4 cut(s) 482, 1058, 1385, 1418
BfmI CTRYAG 3 cut(s) 631, 1294, 1409
BfoI RGCGCY 1 cut(s) 658
BfuAI ACCTGC 1 cut(s) 1177
BisI GCNGC 5 cut(s) 94, 531, 717, 759, 903
BlsI GCNGC 5 cut(s) 95, 532, 718, 760, 904
Bme1390I CCNGG 2 cut(s) 1230, 1263
Bme18I GGWCC 1 cut(s) 1476
BmgBI CACGTC 1 cut(s) 725
BmgT120I GGNCC 1 cut(s) 1476
BmiI GGNNCC 4 cut(s) 295, 1190, 1436, 1477
BmrFI CCNGG 2 cut(s) 1230, 1263
BmsI GCATC 3 cut(s) 45, 982, 1455
BpiI GAAGAC 4 cut(s) 39, 69, 93, 135
BplI GAGNNNNNCTC 2 cut(s) 173, 205
BpmI CTGGAG 1 cut(s) 679
BsaHI GRCGYC 1 cut(s) 1389
BsaJI CCNNGG 2 cut(s) 877, 1438
BsaXI ACNNNNNCTCC 2 cut(s) 405, 435
Bse118I RCCGGY 1 cut(s) 5
Bse1I ACTGG 1 cut(s) 1087
Bse3DI GCAATG 2 cut(s) 741, 948
BseBI CCWGG 2 cut(s) 1230, 1263
BseDI CCNNGG 2 cut(s) 877, 1438
BseGI GGATG 5 cut(s) 374, 872, 1288, 1335, 1449
BseMI GCAATG 2 cut(s) 741, 948
BseMII CTCAG 1 cut(s) 684
BseNI ACTGG 1 cut(s) 1087
BsePI GCGCGC 1 cut(s) 22
BseRI GAGGAG 1 cut(s) 182
BseSI GKGCMC 2 cut(s) 596, 1081
BseXI GCAGC 4 cut(s) 542, 728, 745, 914
BsgI GTGCAG 1 cut(s) 549
Bsh1236I CGCG 2 cut(s) 22, 24
BshFI GGCC 4 cut(s) 5, 173, 279, 1233
BsiHKAI GWGCWC 3 cut(s) 330, 426, 1081
BsiSI CCGG 1 cut(s) 6
BslFI GGGAC 4 cut(s) 1016, 1347, 1376, 1383
BsmFI GGGAC 4 cut(s) 1016, 1347, 1376, 1383
BsnI GGCC 4 cut(s) 5, 173, 279, 1233
Bsp1286I GDGCHC 4 cut(s) 330, 426, 596, 1081
Bsp1407I TGTACA 1 cut(s) 392
Bsp143I GATC 4 cut(s) 201, 677, 881, 1252
Bsp19I CCATGG 1 cut(s) 877
BspACI CCGC 4 cut(s) 93, 205, 268, 1473
BspANI GGCC 4 cut(s) 5, 173, 279, 1233
BspCNI CTCAG 1 cut(s) 685
BspFNI CGCG 2 cut(s) 22, 24
BspLI GGNNCC 4 cut(s) 295, 1190, 1436, 1477
BspMI ACCTGC 1 cut(s) 1177
BspPI GGATC 3 cut(s) 196, 889, 1260
BspQI GCTCTTC 3 cut(s) 318, 431, 1020
BsrBI CCGCTC 1 cut(s) 207
BsrDI GCAATG 2 cut(s) 741, 948
BsrFI RCCGGY 1 cut(s) 5
BsrGI TGTACA 1 cut(s) 392
BsrI ACTGG 1 cut(s) 1087
BssAI RCCGGY 1 cut(s) 5
BssECI CCNNGG 2 cut(s) 877, 1438
BssHII GCGCGC 1 cut(s) 22
BssMI GATC 4 cut(s) 201, 677, 881, 1252
BssNAI GTATAC 1 cut(s) 311
BssNI GRCGYC 1 cut(s) 1389
BssT1I CCWWGG 2 cut(s) 877, 1438
Bst1107I GTATAC 1 cut(s) 311
Bst2UI CCWGG 2 cut(s) 1230, 1263
Bst4CI ACNGT 2 cut(s) 496, 556
Bst6I CTCTTC 5 cut(s) 46, 318, 431, 482, 1020
BstACI GRCGYC 1 cut(s) 1389
BstAUI TGTACA 1 cut(s) 392
BstC8I GCNNGC 7 cut(s) 7, 24, 502, 690, 988, 1280, 1471
BstDEI CTNAG 2 cut(s) 281, 693
BstDSI CCRYGG 1 cut(s) 877
BstF5I GGATG 5 cut(s) 374, 872, 1288, 1335, 1449
BstFNI CGCG 2 cut(s) 22, 24
BstH2I RGCGCY 1 cut(s) 658
BstHHI GCGC 3 cut(s) 24, 26, 657
BstKTI GATC 4 cut(s) 204, 680, 884, 1255
BstMBI GATC 4 cut(s) 201, 677, 881, 1252
BstMWI GCNNNNNNNGC 2 cut(s) 928, 1206
BstNI CCWGG 2 cut(s) 1230, 1263
BstSCI CCNGG 2 cut(s) 1228, 1261
BstSFI CTRYAG 3 cut(s) 631, 1294, 1409
BstSLI GKGCMC 2 cut(s) 596, 1081
BstUI CGCG 2 cut(s) 22, 24
BstV1I GCAGC 4 cut(s) 542, 728, 745, 914
BstV2I GAAGAC 4 cut(s) 39, 69, 93, 135
BstX2I RGATCY 1 cut(s) 881
BstYI RGATCY 1 cut(s) 881
BstZ17I GTATAC 1 cut(s) 311
BsuRI GGCC 4 cut(s) 5, 173, 279, 1233
BtgI CCRYGG 1 cut(s) 877
BtrI CACGTC 1 cut(s) 725
BtsCI GGATG 5 cut(s) 374, 872, 1288, 1335, 1449
BveI ACCTGC 1 cut(s) 1177
Cac8I GCNNGC 7 cut(s) 7, 24, 502, 690, 988, 1280, 1471
CaiI CAGNNNCTG 1 cut(s) 1307
CfoI GCGC 3 cut(s) 24, 26, 657
Cfr10I RCCGGY 1 cut(s) 5
Cfr13I GGNCC 1 cut(s) 1476
CsiI ACCWGGT 1 cut(s) 1261
Csp6I GTAC 3 cut(s) 18, 393, 1223
CviAII CATG 4 cut(s) 878, 1100, 1105, 1123
CviQI GTAC 3 cut(s) 18, 393, 1223
DdeI CTNAG 2 cut(s) 281, 693
DpnI GATC 4 cut(s) 203, 679, 883, 1254
DpnII GATC 4 cut(s) 201, 677, 881, 1252
DraI TTTAAA 1 cut(s) 240
EaeI YGGCCR 2 cut(s) 3, 1231
Eam1104I CTCTTC 5 cut(s) 46, 318, 431, 482, 1020
EarI CTCTTC 5 cut(s) 46, 318, 431, 482, 1020
Eco130I CCWWGG 2 cut(s) 877, 1438
Eco32I GATATC 1 cut(s) 1133
Eco47I GGWCC 1 cut(s) 1476
Eco47III AGCGCT 1 cut(s) 656
Eco57I CTGAAG 1 cut(s) 72
EcoRI GAATTC 1 cut(s) 1114
EcoRII CCWGG 2 cut(s) 1228, 1261
EcoRV GATATC 1 cut(s) 1133
EcoT14I CCWWGG 2 cut(s) 877, 1438
ErhI CCWWGG 2 cut(s) 877, 1438
FaeI CATG 4 cut(s) 881, 1103, 1108, 1126
FaqI GGGAC 4 cut(s) 1016, 1347, 1376, 1383
FatI CATG 4 cut(s) 877, 1099, 1104, 1122
FauI CCCGC 1 cut(s) 1466
FblI GTMKAC 1 cut(s) 310
Fnu4HI GCNGC 5 cut(s) 94, 531, 717, 759, 903
FokI GGATG 5 cut(s) 361, 859, 1275, 1342, 1436
Fsp4HI GCNGC 5 cut(s) 94, 531, 717, 759, 903
FspBI CTAG 4 cut(s) 482, 1058, 1385, 1418
GlaI GCGC 3 cut(s) 23, 25, 656
GluI GCNGC 5 cut(s) 94, 531, 717, 759, 903
GsuI CTGGAG 1 cut(s) 679
HaeII RGCGCY 1 cut(s) 658
HaeIII GGCC 4 cut(s) 5, 173, 279, 1233
HapII CCGG 1 cut(s) 6
HhaI GCGC 3 cut(s) 24, 26, 657
Hin1I GRCGYC 1 cut(s) 1389
Hin1II CATG 4 cut(s) 881, 1103, 1108, 1126
Hin6I GCGC 3 cut(s) 22, 24, 655
HinP1I GCGC 3 cut(s) 22, 24, 655
HincII GTYRAC 1 cut(s) 893
HindII GTYRAC 1 cut(s) 893
HinfI GANTC 6 cut(s) 233, 318, 478, 830, 858, 979
HpaII CCGG 1 cut(s) 6
HphI GGTGA 5 cut(s) 152, 365, 410, 421, 722
Hpy166II GTNNAC 3 cut(s) 311, 893, 1079
Hpy188I TCNGA 6 cut(s) 52, 731, 783, 835, 978, 1185
Hpy188III TCNNGA 3 cut(s) 291, 1241, 1302
Hpy8I GTNNAC 3 cut(s) 311, 893, 1079
Hpy99I CGWCG 3 cut(s) 71, 125, 137
HpyAV CCTTC 5 cut(s) 8, 131, 212, 468, 610
HpyCH4III ACNGT 2 cut(s) 496, 556
HpyCH4IV ACGT 3 cut(s) 724, 778, 1389
HpyF10VI GCNNNNNNNGC 2 cut(s) 928, 1206
HpyF3I CTNAG 2 cut(s) 281, 693
HpySE526I ACGT 3 cut(s) 724, 778, 1389
Hsp92I GRCGYC 1 cut(s) 1389
Hsp92II CATG 4 cut(s) 881, 1103, 1108, 1126
HspAI GCGC 3 cut(s) 22, 24, 655
KroI GCCGGC 1 cut(s) 5
KroNI GCCGGC 1 cut(s) 7
Kzo9I GATC 4 cut(s) 201, 677, 881, 1252
LguI GCTCTTC 3 cut(s) 318, 431, 1020
LmnI GCTCC 2 cut(s) 570, 1304
Lsp1109I GCAGC 4 cut(s) 542, 728, 745, 914
LweI GCATC 3 cut(s) 45, 982, 1455
MabI ACCWGGT 1 cut(s) 1261
MaeI CTAG 4 cut(s) 482, 1058, 1385, 1418
MaeII ACGT 3 cut(s) 724, 778, 1389
MaeIII GTNAC 5 cut(s) 140, 460, 1138, 1193, 1456
MalI GATC 4 cut(s) 203, 679, 883, 1254
MbiI CCGCTC 1 cut(s) 207
MboI GATC 4 cut(s) 201, 677, 881, 1252
MflI RGATCY 1 cut(s) 881
MhlI GDGCHC 4 cut(s) 330, 426, 596, 1081
MlsI TGGCCA 1 cut(s) 1233
MluCI AATT 9 cut(s) 162, 388, 449, 813, 1061, 1114, 1178, 1246, 1270
MluNI TGGCCA 1 cut(s) 1233
MlyI GAGTC 1 cut(s) 852
MmeI TCCRAC 1 cut(s) 216
Mox20I TGGCCA 1 cut(s) 1233
MroNI GCCGGC 1 cut(s) 5
MscI TGGCCA 1 cut(s) 1233
MseI TTAA 4 cut(s) 239, 387, 993, 1463
MslI CAYNNNNRTG 1 cut(s) 1074
Msp20I TGGCCA 1 cut(s) 1233
MspA1I CMGCKG 3 cut(s) 93, 758, 922
MspI CCGG 1 cut(s) 6
MspR9I CCNGG 2 cut(s) 1230, 1263
MvaI CCWGG 2 cut(s) 1230, 1263
MvnI CGCG 2 cut(s) 22, 24
MwoI GCNNNNNNNGC 2 cut(s) 928, 1206
NaeI GCCGGC 1 cut(s) 7
NcoI CCATGG 1 cut(s) 877
NdeII GATC 4 cut(s) 201, 677, 881, 1252
NgoMIV GCCGGC 1 cut(s) 5
NlaIII CATG 4 cut(s) 881, 1103, 1108, 1126
NlaIV GGNNCC 4 cut(s) 295, 1190, 1436, 1477
NmuCI GTSAC 2 cut(s) 140, 460
OliI CACNNNNGTG 1 cut(s) 1074
PaqCI CACCTGC 1 cut(s) 1177
PauI GCGCGC 1 cut(s) 22
PciSI GCTCTTC 3 cut(s) 318, 431, 1020
PcsI WCGNNNNNNNCGW 3 cut(s) 72, 129, 141
PdiI GCCGGC 1 cut(s) 7
PfeI GAWTC 5 cut(s) 233, 318, 478, 830, 979
PkrI GCNGC 5 cut(s) 95, 532, 718, 760, 904
PleI GAGTC 1 cut(s) 852
PpsI GAGTC 1 cut(s) 852
Psp6I CCWGG 2 cut(s) 1228, 1261
PspGI CCWGG 2 cut(s) 1228, 1261
PspN4I GGNNCC 4 cut(s) 295, 1190, 1436, 1477
PspPI GGNCC 1 cut(s) 1476
PstNI CAGNNNCTG 1 cut(s) 1307
PsuI RGATCY 1 cut(s) 881
PteI GCGCGC 1 cut(s) 22
PvuII CAGCTG 2 cut(s) 758, 922
RsaI GTAC 3 cut(s) 19, 394, 1224
RsaNI GTAC 3 cut(s) 18, 393, 1223
RseI CAYNNNNRTG 1 cut(s) 1074
SapI GCTCTTC 3 cut(s) 318, 431, 1020
SaqAI TTAA 4 cut(s) 239, 387, 993, 1463
SatI GCNGC 5 cut(s) 94, 531, 717, 759, 903
Sau3AI GATC 4 cut(s) 201, 677, 881, 1252
Sau96I GGNCC 1 cut(s) 1476
SchI GAGTC 1 cut(s) 852
ScrFI CCNGG 2 cut(s) 1230, 1263
SduI GDGCHC 4 cut(s) 330, 426, 596, 1081
SexAI ACCWGGT 1 cut(s) 1261
SfaNI GCATC 3 cut(s) 45, 982, 1455
SfcI CTRYAG 3 cut(s) 631, 1294, 1409
SinI GGWCC 1 cut(s) 1476
SmiMI CAYNNNNRTG 1 cut(s) 1074
SpeI ACTAGT 1 cut(s) 1417
Sse9I AATT 9 cut(s) 162, 388, 449, 813, 1061, 1114, 1178, 1246, 1270
SsiI CCGC 4 cut(s) 93, 205, 268, 1473
SspI AATATT 1 cut(s) 997
SspMI CTAG 4 cut(s) 482, 1058, 1385, 1418
StyD4I CCNGG 2 cut(s) 1228, 1261
StyI CCWWGG 2 cut(s) 877, 1438
TaaI ACNGT 2 cut(s) 496, 556
TaiI ACGT 3 cut(s) 727, 781, 1392
TaqI TCGA 4 cut(s) 321, 746, 898, 1112
TasI AATT 9 cut(s) 162, 388, 449, 813, 1061, 1114, 1178, 1246, 1270
TatI WGTACW 2 cut(s) 392, 1222
TauI GCSGC 1 cut(s) 96
TfiI GAWTC 5 cut(s) 233, 318, 478, 830, 979
Tru1I TTAA 4 cut(s) 239, 387, 993, 1463
Tru9I TTAA 4 cut(s) 239, 387, 993, 1463
TseFI GTSAC 2 cut(s) 140, 460
TseI GCWGC 4 cut(s) 530, 716, 758, 902
Tsp45I GTSAC 2 cut(s) 140, 460
TspDTI ATGAA 8 cut(s) 141, 681, 752, 843, 1007, 1121, 1277, 1357
TspGWI ACGGA 3 cut(s) 486, 1181, 1468
VneI GTGCAC 1 cut(s) 1077
VpaK11BI GGWCC 1 cut(s) 1476
XapI RAATTY 4 cut(s) 449, 1061, 1114, 1270
XmiI GTMKAC 1 cut(s) 310
XspI CTAG 4 cut(s) 482, 1058, 1385, 1418
ZraI GACGTC 1 cut(s) 1390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.