Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0004312

Physical Location & Seq

Genomic Coordinates Forward (+)

16491075 .. 16495133

Gene Structure 4059 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG179700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGACAAGGCATGGAAAGGTTCTTGGGAAGAGAGTTGTTGCCGGTAGGGTTGTTAAAGAAAGCTATGGTGCGGCTAAACAACAGCATACTTTTACGGTTGAAGTGTTATGGAGTAGGGGAATACAGGAGCTGTGTCCACTATTTCCTCTGCTTGTGAAGGGTCGCAATCTCTACAAAATGAAAACTTTTAGACAGCGTTGGAGTAATGAAGCTGAAAGATCCACAGTGCTAGCTGAGAAGCACAGACGAGGTGGAGCAGCAAGACTTGTGAGAGCGATGAAAAAATCAAAGAAATCGACTGCCAATGGAGGTATGAAGTGTCACAACCAATCCCAATTTTCTAAACCAAACAACAAGCGAAAGACTACAGAATCAGAAAGGGGGAAGCACGCAAGATCTGCAAGAGCAGCACCTTCAGAACAGATGAGTTTCCAACAAAATGCAAGGAGTAAAACCTCTCAACGTTCTAGTAAGCGCCATAAAGCAGATCACCCTAATATAGATAGAGTTCCAACTCTCCGGTCACAGTCTAATCCTCGAATTTGTCATCCATCTCAAATAGAATCTCAACACAGGAATGCTCCTTTCCCATATGCTAGTCATCCCATAGGCTCCACTTCAACCGTGTTGAGATATCCTACAACAACTGATGCTACTACCAGCTTCACTGACAGAAATTATAGCCACTATGGCTACATAGATCCTGTCTATAATCGGGAGTTGAACAACCGGAATCAATTATCAGGATCGGATGCTGGCAGGCCATTTCATCTCTATATGTCAGCAGCTGGGAACTATGGACATAGGGGGTATAGAGATCTTTCTTTTCTAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009889 GO:0009909 GO:0009911 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAP

Protein Analysis

278

Amino Acids

31.6

Weight (kDa)

10.76

Isoelectric Point (pI)

63.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7699	PF24766	3 - 67	2.5e-31	Domain of unknown function (DUF7699)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66840 AT5G66840
fragaria_vesca	FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670 FvH4_1g15670
malus_domestica	MD02G1168400.v1.1
prunus_persica	Prupe.7G136600_v2.0.a1 Prupe.7G136600_v2.0.a1 Prupe.7G136600_v2.0.a1
pyrus_communis	pycom02g13550 pycom15g24350 pycom15g24360
rosa_chinensis	RchiOBHm_Chr2g0104981
rosa_laevigata	RLG00000017385
rosa_multiflora	Rmu_sc0000641.1_g000032
rosa_roxburghii	Rroxscaffold_2G00138610
rosa_rugosa	Rorug02G0124300 Rorug02G0124400 Rorug02G0124500 Rorug02G0124600 Rorug02G0124700 Rorug02G0124800
rosa_samantha	Rh2AG175100 Rh2CG179700 Rh2DG181500
rosa_wichuraiana	Rw2G013760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	71
AclI	AACGTT	1 cut(s)	463
AclWI	GGATC	3 cut(s)	213, 695, 754
AcsI	RAATTY	1 cut(s)	540
AcuI	CTGAAG	1 cut(s)	399
AgsI	TTSAA	3 cut(s)	101, 621, 724
AluBI	AGCT	6 cut(s)	63, 130, 212, 233, 663, 788
AluI	AGCT	6 cut(s)	63, 130, 212, 233, 663, 788
AlwI	GGATC	3 cut(s)	213, 695, 754
AlwNI	CAGNNNCTG	2 cut(s)	130, 788
AoxI	GGCC	1 cut(s)	761
ApeKI	GCWGC	3 cut(s)	257, 407, 785
ApoI	RAATTY	1 cut(s)	540
AspLEI	GCGC	1 cut(s)	477
AsuHPI	GGTGA	1 cut(s)	482
AsuNHI	GCTAGC	1 cut(s)	229
BbvI	GCAGC	3 cut(s)	269, 419, 797
BccI	CCATC	1 cut(s)	559
BfaI	CTAG	3 cut(s)	230, 468, 597
BfmI	CTRYAG	1 cut(s)	366
BfoI	RGCGCY	1 cut(s)	478
BglI	GCCNNNNNGGC	1 cut(s)	690
BglII	AGATCT	2 cut(s)	395, 817
BisI	GCNGC	4 cut(s)	72, 258, 408, 786
BlsI	GCNGC	4 cut(s)	73, 259, 409, 787
BmiI	GGNNCC	1 cut(s)	613
BmsI	GCATC	2 cut(s)	640, 742
BmtI	GCTAGC	1 cut(s)	233
BsaWI	WCCGGW	2 cut(s)	519, 729
Bse118I	RCCGGY	1 cut(s)	41
BseGI	GGATG	3 cut(s)	547, 601, 757
BseMII	CTCAG	1 cut(s)	225
BseXI	GCAGC	3 cut(s)	269, 419, 797
BseYI	CCCAGC	1 cut(s)	788
BshFI	GGCC	1 cut(s)	763
BsiSI	CCGG	3 cut(s)	42, 520, 730
BsmI	GAATGC	1 cut(s)	583
BsnI	GGCC	1 cut(s)	763
Bsp143I	GATC	6 cut(s)	218, 395, 487, 700, 746, 817
BspACI	CCGC	1 cut(s)	71
BspANI	GGCC	1 cut(s)	763
BspCNI	CTCAG	1 cut(s)	226
BspLI	GGNNCC	1 cut(s)	613
BspOI	GCTAGC	1 cut(s)	233
BspPI	GGATC	3 cut(s)	213, 695, 754
BsrFI	RCCGGY	1 cut(s)	41
BssAI	RCCGGY	1 cut(s)	41
BssMI	GATC	6 cut(s)	218, 395, 487, 700, 746, 817
Bst4CI	ACNGT	4 cut(s)	97, 226, 528, 625
Bst6I	CTCTTC	1 cut(s)	23
BstAPI	GCANNNNNTGC	1 cut(s)	398
BstC8I	GCNNGC	4 cut(s)	231, 390, 757, 761
BstDEI	CTNAG	1 cut(s)	234
BstF5I	GGATG	3 cut(s)	547, 601, 757
BstH2I	RGCGCY	1 cut(s)	478
BstHHI	GCGC	1 cut(s)	477
BstKTI	GATC	6 cut(s)	221, 398, 490, 703, 749, 820
BstMBI	GATC	6 cut(s)	218, 395, 487, 700, 746, 817
BstMWI	GCNNNNNNNGC	3 cut(s)	398, 407, 690
BstSFI	CTRYAG	1 cut(s)	366
BstV1I	GCAGC	3 cut(s)	269, 419, 797
BstX2I	RGATCY	4 cut(s)	218, 395, 700, 817
BstYI	RGATCY	4 cut(s)	218, 395, 700, 817
BsuRI	GGCC	1 cut(s)	763
BtgZI	GCGATG	1 cut(s)	290
BtsCI	GGATG	3 cut(s)	547, 601, 757
BtsIMutI	CAGTG	2 cut(s)	231, 666
Cac8I	GCNNGC	4 cut(s)	231, 390, 757, 761
CaiI	CAGNNNCTG	2 cut(s)	130, 788
CfoI	GCGC	1 cut(s)	477
Cfr10I	RCCGGY	1 cut(s)	41
CviAII	CATG	1 cut(s)	11
DdeI	CTNAG	1 cut(s)	234
DpnI	GATC	6 cut(s)	220, 397, 489, 702, 748, 819
DpnII	GATC	6 cut(s)	218, 395, 487, 700, 746, 817
Eam1104I	CTCTTC	1 cut(s)	23
EarI	CTCTTC	1 cut(s)	23
Eco32I	GATATC	1 cut(s)	635
Eco57I	CTGAAG	1 cut(s)	399
EcoRV	GATATC	1 cut(s)	635
FaeI	CATG	1 cut(s)	14
FatI	CATG	1 cut(s)	10
FauNDI	CATATG	1 cut(s)	592
Fnu4HI	GCNGC	4 cut(s)	72, 258, 408, 786
FokI	GGATG	3 cut(s)	534, 588, 764
Fsp4HI	GCNGC	4 cut(s)	72, 258, 408, 786
FspBI	CTAG	3 cut(s)	230, 468, 597
GlaI	GCGC	1 cut(s)	476
GluI	GCNGC	4 cut(s)	72, 258, 408, 786
GsaI	CCCAGC	1 cut(s)	792
HaeII	RGCGCY	1 cut(s)	478
HaeIII	GGCC	1 cut(s)	763
HapII	CCGG	3 cut(s)	42, 520, 730
HhaI	GCGC	1 cut(s)	477
Hin1II	CATG	1 cut(s)	14
Hin6I	GCGC	1 cut(s)	475
HinP1I	GCGC	1 cut(s)	475
HinfI	GANTC	3 cut(s)	371, 563, 733
HpaII	CCGG	3 cut(s)	42, 520, 730
HphI	GGTGA	1 cut(s)	482
Hpy166II	GTNNAC	1 cut(s)	137
Hpy188I	TCNGA	3 cut(s)	376, 418, 751
Hpy188III	TCNNGA	2 cut(s)	716, 744
Hpy8I	GTNNAC	1 cut(s)	137
HpyAV	CCTTC	2 cut(s)	151, 423
HpyCH4III	ACNGT	4 cut(s)	97, 226, 528, 625
HpyCH4IV	ACGT	1 cut(s)	463
HpyCH4V	TGCA	2 cut(s)	401, 443
HpyF10VI	GCNNNNNNNGC	3 cut(s)	398, 407, 690
HpyF3I	CTNAG	1 cut(s)	234
HpySE526I	ACGT	1 cut(s)	463
Hsp92II	CATG	1 cut(s)	14
HspAI	GCGC	1 cut(s)	475
Kzo9I	GATC	6 cut(s)	218, 395, 487, 700, 746, 817
LmnI	GCTCC	4 cut(s)	127, 254, 586, 617
Lsp1109I	GCAGC	3 cut(s)	269, 419, 797
LweI	GCATC	2 cut(s)	640, 742
MaeI	CTAG	3 cut(s)	230, 468, 597
MaeII	ACGT	1 cut(s)	463
MaeIII	GTNAC	2 cut(s)	320, 522
MalI	GATC	6 cut(s)	220, 397, 489, 702, 748, 819
MboI	GATC	6 cut(s)	218, 395, 487, 700, 746, 817
MboII	GAAGA	1 cut(s)	40
MflI	RGATCY	4 cut(s)	218, 395, 700, 817
MluCI	AATT	5 cut(s)	335, 540, 676, 737, 831
MmeI	TCCRAC	3 cut(s)	179, 457, 536
MnlI	CCTC	5 cut(s)	156, 242, 302, 466, 546
MseI	TTAA	1 cut(s)	54
MslI	CAYNNNNRTG	1 cut(s)	576
MspA1I	CMGCKG	1 cut(s)	788
MspI	CCGG	3 cut(s)	42, 520, 730
Mva1269I	GAATGC	1 cut(s)	583
MwoI	GCNNNNNNNGC	3 cut(s)	398, 407, 690
NdeI	CATATG	1 cut(s)	592
NdeII	GATC	6 cut(s)	218, 395, 487, 700, 746, 817
NheI	GCTAGC	1 cut(s)	229
NlaIII	CATG	1 cut(s)	14
NlaIV	GGNNCC	1 cut(s)	613
NmuCI	GTSAC	2 cut(s)	320, 522
PctI	GAATGC	1 cut(s)	583
PfeI	GAWTC	3 cut(s)	371, 563, 733
PkrI	GCNGC	4 cut(s)	73, 259, 409, 787
Psp1406I	AACGTT	1 cut(s)	463
PspFI	CCCAGC	1 cut(s)	788
PspN4I	GGNNCC	1 cut(s)	613
PstNI	CAGNNNCTG	2 cut(s)	130, 788
PsuI	RGATCY	4 cut(s)	218, 395, 700, 817
PvuII	CAGCTG	1 cut(s)	788
RseI	CAYNNNNRTG	1 cut(s)	576
SaqAI	TTAA	1 cut(s)	54
SatI	GCNGC	4 cut(s)	72, 258, 408, 786
Sau3AI	GATC	6 cut(s)	218, 395, 487, 700, 746, 817
SfaNI	GCATC	2 cut(s)	640, 742
SfcI	CTRYAG	1 cut(s)	366
SmiMI	CAYNNNNRTG	1 cut(s)	576
Sse9I	AATT	5 cut(s)	335, 540, 676, 737, 831
SsiI	CCGC	1 cut(s)	71
SspMI	CTAG	3 cut(s)	230, 468, 597
TaaI	ACNGT	4 cut(s)	97, 226, 528, 625
TaiI	ACGT	1 cut(s)	466
TaqI	TCGA	2 cut(s)	296, 538
TasI	AATT	5 cut(s)	335, 540, 676, 737, 831
TauI	GCSGC	1 cut(s)	74
TfiI	GAWTC	3 cut(s)	371, 563, 733
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TscAI	CASTG	2 cut(s)	231, 673
TseFI	GTSAC	2 cut(s)	320, 522
TseI	GCWGC	3 cut(s)	257, 407, 785
Tsp45I	GTSAC	2 cut(s)	320, 522
TspDTI	ATGAA	5 cut(s)	194, 222, 293, 329, 758
TspRI	CASTG	2 cut(s)	231, 673
XapI	RAATTY	1 cut(s)	540
XspI	CTAG	3 cut(s)	230, 468, 597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.