Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004140

Physical Location & Seq

Genomic Coordinates Forward (+)

26765992 .. 26767257

Gene Structure 1266 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G67060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGATTCTGACATAATGAACATGATGATGCATCAGATGGAGAAGCTTCCTGAGTTTTGTAACCCTAATTCCTCTTTCTTCTCTCCCGACCACAACAACACTTACCCTTTTCTCTTTAACTCCACTCATTACCAGTCCGATCACTCAATGACCAACGAACCAGGTTTCCGCTACGGTTCCGGTTTACTCACTAACCCTTCTTCTATCTCTCCCAACACAGCTTACTCTTCCGTTTTTCTTGACAAAAGAAACAACAGTAACAACAACAATAATGGCACGAACATGGCAGCTATGCGAGAGATGATCTTCCGTATCGCCGTGATGCAACCGATCCATATCGATCCCGAGGCGGTTAAGCCACCGAAGAGGAGGAACGTCAGGATCTCTAAAGATCCTCAAAGCGTGGCGGCTAGGCATAGAAGGGAGAGAATAAGCGAGAGGATTCGGATTTTGCAACGGCTTGTTCCTGGTGGGACGAAGATGGATACAGCTTCGATGCTCGATGAAGCAATTCATTATGTGAAGTTTTTAAAGAAACAGGTGCAGTCTCTGGAGGAGCAGGCGGTGGTTACTGGCGGAGGGGGAGGAGGAGGAGGAAGGGTTTTGATCGGTGGAGGTGGAATGACGGCGGCGAGTGGTGGTGGTGGCGGCGGGGGAGTGGTTATGAAAGGGTGTGGAACAGTGGGGACTCATCAGATGGTGGGCAATGCACAGATTCTTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0010468 GO:0010500 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0035670 GO:0043565 GO:0045893 GO:0045935 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048445 GO:0048449 GO:0048462 GO:0048467 GO:0048518 GO:0048522 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080126 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905328 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

241

Amino Acids

26.23

Weight (kDa)

9.61

Isoelectric Point (pI)

56.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	137 - 178	3.3e-07	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	139 - 183	2.3e-12	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004140)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50330 AT5G67060 AT5G67060
fragaria_vesca	FvH4_1g16130 FvH4_2g34280
malus_domestica	MD02G1173400.v1.1 MD08G1098800.v1.1 MD15G1081100.v1.1 MD15G1284900.v1.1
prunus_persica	Prupe.1G434000_v2.0.a1 Prupe.7G132300_v2.0.a1
pyrus_communis	pycom15g07560 pycom15g07580
rosa_chinensis	RchiOBHm_Chr2g0105811 RchiOBHm_Chr6g0308101
rosa_laevigata	RLG00000010668 RLG00000017461
rosa_multiflora	Rmu_sc0005706.1_g000001 Rmu_sc0010497.1_g000002
rosa_roxburghii	Rroxscaffold_2G00137880 Rroxscaffold_7G00160540
rosa_rugosa	Rorug02G0130500 Rorug06G0364000
rosa_samantha	Rh2AG181700 Rh2BG191300 Rh2CG186000 Rh2DG187900 Rh6AG472700 Rh6BG483900 Rh6CG488800 Rh6DG475100
rosa_wichuraiana	Rw2G014230 Rw6G041250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	8 cut(s)	169, 350, 407, 563, 576, 629, 648, 651
AclWI	GGATC	4 cut(s)	325, 335, 386, 389
AjnI	CCWGG	2 cut(s)	160, 466
AloI	GAACNNNNNNTCC	2 cut(s)	150, 182
AluBI	AGCT	4 cut(s)	46, 221, 290, 491
AluI	AGCT	4 cut(s)	46, 221, 290, 491
Alw26I	GTCTC	1 cut(s)	552
AlwI	GGATC	4 cut(s)	325, 335, 386, 389
AlwNI	CAGNNNCTG	1 cut(s)	550
Ama87I	CYCGRG	1 cut(s)	344
ApeKI	GCWGC	1 cut(s)	287
Asp700I	GAANNNNTTC	1 cut(s)	510
AvaI	CYCGRG	1 cut(s)	344
BbvI	GCAGC	1 cut(s)	299
BccI	CCATC	3 cut(s)	31, 475, 691
BceAI	ACGGC	3 cut(s)	302, 473, 642
BciT130I	CCWGG	2 cut(s)	162, 468
BciVI	GTATCC	1 cut(s)	478
BcoDI	GTCTC	1 cut(s)	552
BfaI	CTAG	1 cut(s)	411
BfuI	GTATCC	1 cut(s)	478
BisI	GCNGC	4 cut(s)	288, 408, 630, 649
BlsI	GCNGC	4 cut(s)	289, 409, 631, 650
Bme1390I	CCNGG	2 cut(s)	162, 468
BmeT110I	CYCGRG	1 cut(s)	344
BmiI	GGNNCC	1 cut(s)	178
BmrFI	CCNGG	2 cut(s)	162, 468
BmsI	GCATC	4 cut(s)	18, 40, 312, 486
BpmI	CTGGAG	1 cut(s)	572
Bsa29I	ATCGAT	1 cut(s)	339
BsaBI	GATNNNNATC	1 cut(s)	335
BsaJI	CCNNGG	1 cut(s)	345
BsaWI	WCCGGW	1 cut(s)	179
BsaXI	ACNNNNNCTCC	2 cut(s)	585, 615
Bse1I	ACTGG	2 cut(s)	133, 577
Bse3DI	GCAATG	1 cut(s)	712
Bse8I	GATNNNNATC	1 cut(s)	335
BseBI	CCWGG	2 cut(s)	162, 468
BseCI	ATCGAT	1 cut(s)	339
BseDI	CCNNGG	1 cut(s)	345
BseJI	GATNNNNATC	1 cut(s)	335
BseMI	GCAATG	1 cut(s)	712
BseMII	CTCAG	1 cut(s)	42
BseNI	ACTGG	2 cut(s)	133, 577
BseRI	GAGGAG	5 cut(s)	382, 569, 600, 603, 606
BseXI	GCAGC	1 cut(s)	299
BsgI	GTGCAG	1 cut(s)	563
BshVI	ATCGAT	1 cut(s)	339
BsiHKCI	CYCGRG	1 cut(s)	344
BsiSI	CCGG	1 cut(s)	180
BslFI	GGGAC	2 cut(s)	487, 700
BsmAI	GTCTC	1 cut(s)	552
BsmFI	GGGAC	2 cut(s)	487, 700
BsoBI	CYCGRG	1 cut(s)	344
Bsp143I	GATC	7 cut(s)	139, 303, 330, 340, 381, 391, 606
BspACI	CCGC	8 cut(s)	169, 350, 407, 563, 576, 629, 648, 651
BspCNI	CTCAG	1 cut(s)	43
BspDI	ATCGAT	1 cut(s)	339
BspLI	GGNNCC	1 cut(s)	178
BspPI	GGATC	4 cut(s)	325, 335, 386, 389
BsrDI	GCAATG	1 cut(s)	712
BsrI	ACTGG	2 cut(s)	133, 577
BssECI	CCNNGG	1 cut(s)	345
BssMI	GATC	7 cut(s)	139, 303, 330, 340, 381, 391, 606
Bst2UI	CCWGG	2 cut(s)	162, 468
Bst4CI	ACNGT	3 cut(s)	176, 257, 682
Bst6I	CTCTTC	2 cut(s)	232, 359
BstC8I	GCNNGC	1 cut(s)	561
BstDEI	CTNAG	2 cut(s)	51, 719
BstKTI	GATC	7 cut(s)	142, 306, 333, 343, 384, 394, 609
BstMAI	GTCTC	1 cut(s)	552
BstMBI	GATC	7 cut(s)	139, 303, 330, 340, 381, 391, 606
BstNI	CCWGG	2 cut(s)	162, 468
BstSCI	CCNGG	2 cut(s)	160, 466
BstV1I	GCAGC	1 cut(s)	299
BstX2I	RGATCY	2 cut(s)	381, 391
BstYI	RGATCY	2 cut(s)	381, 391
Bsu15I	ATCGAT	1 cut(s)	339
BsuI	GTATCC	1 cut(s)	478
BsuTUI	ATCGAT	1 cut(s)	339
BtsIMutI	CAGTG	1 cut(s)	687
Cac8I	GCNNGC	1 cut(s)	561
CaiI	CAGNNNCTG	1 cut(s)	550
ClaI	ATCGAT	1 cut(s)	339
CsiI	ACCWGGT	1 cut(s)	160
CviAII	CATG	2 cut(s)	22, 283
CviJI	RGCY	7 cut(s)	46, 221, 290, 358, 410, 460, 491
CviKI_1	RGCY	7 cut(s)	46, 221, 290, 358, 410, 460, 491
DdeI	CTNAG	2 cut(s)	51, 719
DpnI	GATC	7 cut(s)	141, 305, 332, 342, 383, 393, 608
DpnII	GATC	7 cut(s)	139, 303, 330, 340, 381, 391, 606
DraI	TTTAAA	1 cut(s)	531
Eam1104I	CTCTTC	2 cut(s)	232, 359
EarI	CTCTTC	2 cut(s)	232, 359
EciI	GGCGGA	1 cut(s)	591
Eco88I	CYCGRG	1 cut(s)	344
EcoRII	CCWGG	2 cut(s)	160, 466
EcoT22I	ATGCAT	1 cut(s)	33
FaeI	CATG	2 cut(s)	25, 286
FaiI	YATR	8 cut(s)	14, 23, 284, 293, 336, 417, 519, 665
FaqI	GGGAC	2 cut(s)	487, 700
FatI	CATG	2 cut(s)	21, 282
FauI	CCCGC	1 cut(s)	644
Fnu4HI	GCNGC	4 cut(s)	288, 408, 630, 649
Fsp4HI	GCNGC	4 cut(s)	288, 408, 630, 649
FspBI	CTAG	1 cut(s)	411
GluI	GCNGC	4 cut(s)	288, 408, 630, 649
GsuI	CTGGAG	1 cut(s)	572
HapII	CCGG	1 cut(s)	180
Hin1II	CATG	2 cut(s)	25, 286
HindIII	AAGCTT	1 cut(s)	44
HinfI	GANTC	4 cut(s)	5, 442, 688, 715
HpaII	CCGG	1 cut(s)	180
Hpy166II	GTNNAC	1 cut(s)	185
Hpy188I	TCNGA	5 cut(s)	10, 36, 139, 447, 696
Hpy188III	TCNNGA	6 cut(s)	50, 86, 239, 344, 379, 551
Hpy8I	GTNNAC	1 cut(s)	185
HpyAV	CCTTC	3 cut(s)	207, 414, 591
HpyCH4III	ACNGT	3 cut(s)	176, 257, 682
HpyCH4IV	ACGT	1 cut(s)	375
HpyCH4V	TGCA	5 cut(s)	31, 325, 454, 544, 710
HpyF3I	CTNAG	2 cut(s)	51, 719
HpySE526I	ACGT	1 cut(s)	375
Hsp92II	CATG	2 cut(s)	25, 286
Kzo9I	GATC	7 cut(s)	139, 303, 330, 340, 381, 391, 606
LmnI	GCTCC	1 cut(s)	556
Lsp1109I	GCAGC	1 cut(s)	299
LweI	GCATC	4 cut(s)	18, 40, 312, 486
MabI	ACCWGGT	1 cut(s)	160
MaeI	CTAG	1 cut(s)	411
MaeII	ACGT	1 cut(s)	375
MaeIII	GTNAC	3 cut(s)	59, 257, 568
MalI	GATC	7 cut(s)	141, 305, 332, 342, 383, 393, 608
MboI	GATC	7 cut(s)	139, 303, 330, 340, 381, 391, 606
MboII	GAAGA	6 cut(s)	70, 192, 219, 298, 376, 490
MflI	RGATCY	2 cut(s)	381, 391
MluCI	AATT	2 cut(s)	67, 510
MlyI	GAGTC	1 cut(s)	682
Mph1103I	ATGCAT	1 cut(s)	33
MroXI	GAANNNNTTC	1 cut(s)	510
MseI	TTAA	3 cut(s)	117, 354, 530
MslI	CAYNNNNRTG	2 cut(s)	26, 281
MspI	CCGG	1 cut(s)	180
MspR9I	CCNGG	2 cut(s)	162, 468
MvaI	CCWGG	2 cut(s)	162, 468
NdeII	GATC	7 cut(s)	139, 303, 330, 340, 381, 391, 606
NlaIII	CATG	2 cut(s)	25, 286
NlaIV	GGNNCC	1 cut(s)	178
NsiI	ATGCAT	1 cut(s)	33
PdmI	GAANNNNTTC	1 cut(s)	510
PfeI	GAWTC	3 cut(s)	5, 442, 715
PkrI	GCNGC	4 cut(s)	289, 409, 631, 650
PleI	GAGTC	1 cut(s)	682
PpsI	GAGTC	1 cut(s)	682
Psp6I	CCWGG	2 cut(s)	160, 466
PspGI	CCWGG	2 cut(s)	160, 466
PspN4I	GGNNCC	1 cut(s)	178
PstNI	CAGNNNCTG	1 cut(s)	550
PsuI	RGATCY	2 cut(s)	381, 391
RseI	CAYNNNNRTG	2 cut(s)	26, 281
SaqAI	TTAA	3 cut(s)	117, 354, 530
SatI	GCNGC	4 cut(s)	288, 408, 630, 649
Sau3AI	GATC	7 cut(s)	139, 303, 330, 340, 381, 391, 606
SchI	GAGTC	1 cut(s)	682
ScrFI	CCNGG	2 cut(s)	162, 468
SetI	ASST	8 cut(s)	48, 166, 223, 292, 378, 493, 543, 619
SexAI	ACCWGGT	1 cut(s)	160
SfaNI	GCATC	4 cut(s)	18, 40, 312, 486
SmiMI	CAYNNNNRTG	2 cut(s)	26, 281
Sse9I	AATT	2 cut(s)	67, 510
SsiI	CCGC	8 cut(s)	169, 350, 407, 563, 576, 629, 648, 651
SspMI	CTAG	1 cut(s)	411
StyD4I	CCNGG	2 cut(s)	160, 466
TaaI	ACNGT	3 cut(s)	176, 257, 682
TaiI	ACGT	1 cut(s)	378
TaqI	TCGA	3 cut(s)	339, 494, 501
TasI	AATT	2 cut(s)	67, 510
TauI	GCSGC	3 cut(s)	410, 632, 651
TfiI	GAWTC	3 cut(s)	5, 442, 715
Tru1I	TTAA	3 cut(s)	117, 354, 530
Tru9I	TTAA	3 cut(s)	117, 354, 530
TscAI	CASTG	1 cut(s)	687
TseI	GCWGC	1 cut(s)	287
TspDTI	ATGAA	4 cut(s)	32, 503, 519, 680
TspGWI	ACGGA	2 cut(s)	220, 299
TspRI	CASTG	1 cut(s)	687
XmnI	GAANNNNTTC	1 cut(s)	510
XspI	CTAG	1 cut(s)	411
Zsp2I	ATGCAT	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.