transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G50330 AT5G67060 AT5G67060 |
| fragaria_vesca | FvH4_1g16130 FvH4_2g34280 |
| malus_domestica | MD02G1173400.v1.1 MD08G1098800.v1.1 MD15G1081100.v1.1 MD15G1284900.v1.1 |
| prunus_persica | Prupe.1G434000_v2.0.a1 Prupe.7G132300_v2.0.a1 |
| pyrus_communis | pycom15g07560 pycom15g07580 |
| rosa_chinensis | RchiOBHm_Chr2g0105811 RchiOBHm_Chr6g0308101 |
| rosa_laevigata | RLG00000010668 RLG00000017461 |
| rosa_multiflora | Rmu_sc0005706.1_g000001 Rmu_sc0010497.1_g000002 |
| rosa_roxburghii | Rroxscaffold_2G00137880 Rroxscaffold_7G00160540 |
| rosa_rugosa | Rorug02G0130500 Rorug06G0364000 |
| rosa_samantha | Rh2AG181700 Rh2BG191300 Rh2CG186000 Rh2DG187900 Rh6AG472700 Rh6BG483900 Rh6CG488800 Rh6DG475100 |
| rosa_wichuraiana | Rw2G014230 Rw6G041250 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 768 |
| Acc16I | TGCGCA | 1 cut(s) | 2267 |
| Acc36I | ACCTGC | 1 cut(s) | 953 |
| AccB1I | GGYRCC | 4 cut(s) | 69, 1498, 2063, 2247 |
| AccI | GTMKAC | 2 cut(s) | 2510, 2806 |
| AccII | CGCG | 2 cut(s) | 11, 537 |
| AciI | CCGC | 8 cut(s) | 9, 11, 67, 76, 2198, 2201, 2242, 3083 |
| AclI | AACGTT | 2 cut(s) | 322, 1113 |
| AclWI | GGATC | 7 cut(s) | 656, 700, 738, 853, 1536, 1553, 2111 |
| AcoI | YGGCCR | 3 cut(s) | 1855, 1975, 2799 |
| AcsI | RAATTY | 9 cut(s) | 1139, 1451, 1511, 1537, 1603, 2155, 2171, 2279, 2642 |
| AcuI | CTGAAG | 4 cut(s) | 930, 1416, 2054, 2873 |
| AcyI | GRCGYC | 1 cut(s) | 70 |
| AfaI | GTAC | 6 cut(s) | 935, 1196, 3012, 3025, 3240, 3293 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 81, 390, 842, 1495 |
| AflIII | ACRYGT | 1 cut(s) | 2809 |
| AjnI | CCWGG | 3 cut(s) | 680, 1780, 3055 |
| AleI | CACNNNNGTG | 1 cut(s) | 145 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2484, 2516 |
| Alw21I | GWGCWC | 1 cut(s) | 2236 |
| Alw26I | GTCTC | 3 cut(s) | 633, 1490, 2631 |
| Alw44I | GTGCAC | 1 cut(s) | 2232 |
| AlwI | GGATC | 7 cut(s) | 656, 700, 738, 853, 1536, 1553, 2111 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2350 |
| Ama87I | CYCGRG | 1 cut(s) | 1503 |
| AoxI | GGCC | 4 cut(s) | 561, 1855, 1975, 2799 |
| ApaLI | GTGCAC | 1 cut(s) | 2232 |
| ApoI | RAATTY | 9 cut(s) | 1139, 1451, 1511, 1537, 1603, 2155, 2171, 2279, 2642 |
| AseI | ATTAAT | 2 cut(s) | 1440, 2952 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 3139 |
| AspLEI | GCGC | 5 cut(s) | 72, 704, 2268, 3036, 3073 |
| AspS9I | GGNCC | 7 cut(s) | 477, 678, 1240, 1816, 2844, 2900, 3266 |
| AsuC2I | CCSGG | 1 cut(s) | 399 |
| AsuHPI | GGTGA | 8 cut(s) | 59, 387, 524, 1301, 1352, 1543, 2517, 3191 |
| AsuII | TTCGAA | 3 cut(s) | 1428, 1534, 2297 |
| AvaI | CYCGRG | 1 cut(s) | 1503 |
| AvaII | GGWCC | 7 cut(s) | 477, 678, 1240, 1816, 2844, 2900, 3266 |
| BaeGI | GKGCMC | 2 cut(s) | 2068, 2236 |
| BaeI | ACNNNNGTAYC | 6 cut(s) | 96, 129, 744, 777, 2522, 2555 |
| BalI | TGGCCA | 2 cut(s) | 1977, 2801 |
| BanI | GGYRCC | 4 cut(s) | 69, 1498, 2063, 2247 |
| BanII | GRGCYC | 2 cut(s) | 3153, 3192 |
| BauI | CACGAG | 1 cut(s) | 1323 |
| BbsI | GAAGAC | 2 cut(s) | 1469, 3209 |
| Bbv12I | GWGCWC | 1 cut(s) | 2236 |
| BbvCI | CCTCAGC | 2 cut(s) | 429, 2586 |
| BccI | CCATC | 9 cut(s) | 38, 340, 572, 1025, 1842, 1910, 2349, 2971, 3257 |
| BceAI | ACGGC | 1 cut(s) | 8 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1524, 1558, 2277, 2311 |
| BciT130I | CCWGG | 3 cut(s) | 682, 1782, 3057 |
| BciVI | GTATCC | 2 cut(s) | 1643, 2550 |
| BclI | TGATCA | 1 cut(s) | 916 |
| BcnI | CCSGG | 1 cut(s) | 399 |
| BcoDI | GTCTC | 3 cut(s) | 633, 1490, 2631 |
| BfmI | CTRYAG | 5 cut(s) | 588, 756, 2577, 2724, 3234 |
| BfoI | RGCGCY | 3 cut(s) | 73, 705, 3074 |
| BfuAI | ACCTGC | 1 cut(s) | 953 |
| BfuI | GTATCC | 2 cut(s) | 1643, 2550 |
| BglII | AGATCT | 1 cut(s) | 2003 |
| BlpI | GCTNAGC | 1 cut(s) | 615 |
| BmcAI | AGTACT | 1 cut(s) | 3240 |
| Bme1390I | CCNGG | 4 cut(s) | 399, 682, 1782, 3057 |
| Bme18I | GGWCC | 7 cut(s) | 477, 678, 1240, 1816, 2844, 2900, 3266 |
| BmeT110I | CYCGRG | 1 cut(s) | 1503 |
| BmgT120I | GGNCC | 7 cut(s) | 477, 678, 1240, 1816, 2844, 2900, 3266 |
| BmiI | GGNNCC | 7 cut(s) | 71, 421, 1500, 2065, 2249, 2846, 2901 |
| BmrFI | CCNGG | 4 cut(s) | 399, 682, 1782, 3057 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1959 |
| BpiI | GAAGAC | 2 cut(s) | 1469, 3209 |
| BpmI | CTGGAG | 2 cut(s) | 981, 2372 |
| Bpu10I | CCTNAGC | 5 cut(s) | 90, 151, 429, 1902, 2586 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 615 |
| Bpu14I | TTCGAA | 3 cut(s) | 1428, 1534, 2297 |
| BpuEI | CTTGAG | 1 cut(s) | 2357 |
| BpuMI | CCSGG | 1 cut(s) | 399 |
| Bsa29I | ATCGAT | 1 cut(s) | 1846 |
| BsaAI | YACGTR | 1 cut(s) | 867 |
| BsaHI | GRCGYC | 1 cut(s) | 70 |
| BsaJI | CCNNGG | 8 cut(s) | 9, 480, 786, 1220, 1490, 1502, 2085, 3192 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 81, 390, 842, 1495 |
| Bse118I | RCCGGY | 1 cut(s) | 2535 |
| Bse1I | ACTGG | 7 cut(s) | 479, 722, 998, 1054, 2355, 2668, 2802 |
| Bse3DI | GCAATG | 5 cut(s) | 1638, 2736, 2779, 2791, 3166 |
| BseBI | CCWGG | 3 cut(s) | 682, 1782, 3057 |
| BseCI | ATCGAT | 1 cut(s) | 1846 |
| BseDI | CCNNGG | 8 cut(s) | 9, 480, 786, 1220, 1490, 1502, 2085, 3192 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 81, 390, 842, 1495 |
| BseMI | GCAATG | 5 cut(s) | 1638, 2736, 2779, 2791, 3166 |
| BseNI | ACTGG | 7 cut(s) | 479, 722, 998, 1054, 2355, 2668, 2802 |
| BseRI | GAGGAG | 3 cut(s) | 417, 2062, 2603 |
| BseSI | GKGCMC | 2 cut(s) | 2068, 2236 |
| BseYI | CCCAGC | 2 cut(s) | 1829, 3152 |
| BsgI | GTGCAG | 3 cut(s) | 702, 1305, 1421 |
| Bsh1236I | CGCG | 2 cut(s) | 11, 537 |
| BshFI | GGCC | 4 cut(s) | 563, 1857, 1977, 2801 |
| BshNI | GGYRCC | 4 cut(s) | 69, 1498, 2063, 2247 |
| BshVI | ATCGAT | 1 cut(s) | 1846 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2236 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1503 |
| BsiSI | CCGG | 3 cut(s) | 399, 1858, 2536 |
| BslFI | GGGAC | 3 cut(s) | 294, 2830, 2913 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 81, 390, 842, 1495 |
| BsmAI | GTCTC | 3 cut(s) | 633, 1490, 2631 |
| BsmBI | CGTCTC | 1 cut(s) | 1490 |
| BsmFI | GGGAC | 3 cut(s) | 294, 2830, 2913 |
| BsnI | GGCC | 4 cut(s) | 563, 1857, 1977, 2801 |
| BsoBI | CYCGRG | 1 cut(s) | 1503 |
| Bsp119I | TTCGAA | 3 cut(s) | 1428, 1534, 2297 |
| Bsp1286I | GDGCHC | 4 cut(s) | 2068, 2236, 3153, 3192 |
| Bsp1407I | TGTACA | 1 cut(s) | 3291 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 615 |
| Bsp19I | CCATGG | 3 cut(s) | 480, 1490, 3192 |
| BspACI | CCGC | 8 cut(s) | 9, 11, 67, 76, 2198, 2201, 2242, 3083 |
| BspANI | GGCC | 4 cut(s) | 563, 1857, 1977, 2801 |
| BspDI | ATCGAT | 1 cut(s) | 1846 |
| BspFNI | CGCG | 2 cut(s) | 11, 537 |
| BspHI | TCATGA | 1 cut(s) | 2403 |
| BspLI | GGNNCC | 7 cut(s) | 71, 421, 1500, 2065, 2249, 2846, 2901 |
| BspMAI | CTGCAG | 2 cut(s) | 760, 2728 |
| BspMI | ACCTGC | 1 cut(s) | 953 |
| BspPI | GGATC | 7 cut(s) | 656, 700, 738, 853, 1536, 1553, 2111 |
| BspT104I | TTCGAA | 3 cut(s) | 1428, 1534, 2297 |
| BspT107I | GGYRCC | 4 cut(s) | 69, 1498, 2063, 2247 |
| BsrDI | GCAATG | 5 cut(s) | 1638, 2736, 2779, 2791, 3166 |
| BsrFI | RCCGGY | 1 cut(s) | 2535 |
| BsrGI | TGTACA | 1 cut(s) | 3291 |
| BsrI | ACTGG | 7 cut(s) | 479, 722, 998, 1054, 2355, 2668, 2802 |
| BssAI | RCCGGY | 1 cut(s) | 2535 |
| BssECI | CCNNGG | 8 cut(s) | 9, 480, 786, 1220, 1490, 1502, 2085, 3192 |
| BssNAI | GTATAC | 1 cut(s) | 2511 |
| BssNI | GRCGYC | 1 cut(s) | 70 |
| BssSI | CACGAG | 1 cut(s) | 1323 |
| BssT1I | CCWWGG | 6 cut(s) | 480, 786, 1220, 1490, 2085, 3192 |
| Bst1107I | GTATAC | 1 cut(s) | 2511 |
| Bst2BI | CACGAG | 1 cut(s) | 1323 |
| Bst2UI | CCWGG | 3 cut(s) | 682, 1782, 3057 |
| Bst4CI | ACNGT | 5 cut(s) | 1616, 1864, 1958, 2231, 3211 |
| Bst6I | CTCTTC | 1 cut(s) | 1753 |
| BstACI | GRCGYC | 1 cut(s) | 70 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 3165 |
| BstAUI | TGTACA | 1 cut(s) | 3291 |
| BstBAI | YACGTR | 1 cut(s) | 867 |
| BstBI | TTCGAA | 3 cut(s) | 1428, 1534, 2297 |
| BstC8I | GCNNGC | 7 cut(s) | 700, 1883, 1899, 2270, 2433, 2799, 2934 |
| BstDSI | CCRYGG | 4 cut(s) | 9, 480, 1490, 3192 |
| BstEII | GGTNACC | 1 cut(s) | 393 |
| BstFNI | CGCG | 2 cut(s) | 11, 537 |
| BstH2I | RGCGCY | 3 cut(s) | 73, 705, 3074 |
| BstHHI | GCGC | 5 cut(s) | 72, 704, 2268, 3036, 3073 |
| BstMAI | GTCTC | 3 cut(s) | 633, 1490, 2631 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 91, 277, 524, 1361, 2254, 2263, 2582, 2720, 3165 |
| BstNI | CCWGG | 3 cut(s) | 682, 1782, 3057 |
| BstNSI | RCATGY | 3 cut(s) | 1379, 1901, 2813 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1959 |
| BstPI | GGTNACC | 1 cut(s) | 393 |
| BstSCI | CCNGG | 4 cut(s) | 397, 680, 1780, 3055 |
| BstSFI | CTRYAG | 5 cut(s) | 588, 756, 2577, 2724, 3234 |
| BstSLI | GKGCMC | 2 cut(s) | 2068, 2236 |
| BstUI | CGCG | 2 cut(s) | 11, 537 |
| BstV2I | GAAGAC | 2 cut(s) | 1469, 3209 |
| BstX2I | RGATCY | 5 cut(s) | 692, 730, 1528, 2003, 2116 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1579 |
| BstYI | RGATCY | 5 cut(s) | 692, 730, 1528, 2003, 2116 |
| BstZ17I | GTATAC | 1 cut(s) | 2511 |
| Bsu15I | ATCGAT | 1 cut(s) | 1846 |
| BsuI | GTATCC | 2 cut(s) | 1643, 2550 |
| BsuRI | GGCC | 4 cut(s) | 563, 1857, 1977, 2801 |
| BsuTUI | ATCGAT | 1 cut(s) | 1846 |
| BtgI | CCRYGG | 4 cut(s) | 9, 480, 1490, 3192 |
| BtgZI | GCGATG | 2 cut(s) | 1709, 2543 |
| BtsI | GCAGTG | 1 cut(s) | 1566 |
| BtsIMutI | CAGTG | 6 cut(s) | 472, 1566, 2236, 2348, 2661, 3216 |
| BveI | ACCTGC | 1 cut(s) | 953 |
| Cac8I | GCNNGC | 7 cut(s) | 700, 1883, 1899, 2270, 2433, 2799, 2934 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2350 |
| CciI | TCATGA | 1 cut(s) | 2403 |
| CfoI | GCGC | 5 cut(s) | 72, 704, 2268, 3036, 3073 |
| Cfr10I | RCCGGY | 1 cut(s) | 2535 |
| Cfr13I | GGNCC | 7 cut(s) | 477, 678, 1240, 1816, 2844, 2900, 3266 |
| Cfr42I | CCGCGG | 1 cut(s) | 12 |
| ClaI | ATCGAT | 1 cut(s) | 1846 |
| CseI | GACGC | 3 cut(s) | 506, 526, 3203 |
| Csp6I | GTAC | 6 cut(s) | 934, 1195, 3011, 3024, 3239, 3292 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1218, 1253 |
| CviQI | GTAC | 6 cut(s) | 934, 1195, 3011, 3024, 3239, 3292 |
| DinI | GGCGCC | 1 cut(s) | 71 |
| DraI | TTTAAA | 1 cut(s) | 523 |
| EaeI | YGGCCR | 3 cut(s) | 1855, 1975, 2799 |
| Eam1104I | CTCTTC | 1 cut(s) | 1753 |
| EarI | CTCTTC | 1 cut(s) | 1753 |
| EciI | GGCGGA | 1 cut(s) | 2216 |
| Eco130I | CCWWGG | 6 cut(s) | 480, 786, 1220, 1490, 2085, 3192 |
| Eco147I | AGGCCT | 1 cut(s) | 563 |
| Eco24I | GRGCYC | 2 cut(s) | 3153, 3192 |
| Eco47I | GGWCC | 7 cut(s) | 477, 678, 1240, 1816, 2844, 2900, 3266 |
| Eco57I | CTGAAG | 4 cut(s) | 930, 1416, 2054, 2873 |
| Eco88I | CYCGRG | 1 cut(s) | 1503 |
| Eco91I | GGTNACC | 1 cut(s) | 393 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2900 |
| EcoO65I | GGTNACC | 1 cut(s) | 393 |
| EcoRII | CCWGG | 3 cut(s) | 680, 1780, 3055 |
| EcoT14I | CCWWGG | 6 cut(s) | 480, 786, 1220, 1490, 2085, 3192 |
| EcoT38I | GRGCYC | 2 cut(s) | 3153, 3192 |
| EgeI | GGCGCC | 1 cut(s) | 71 |
| EheI | GGCGCC | 1 cut(s) | 71 |
| ErhI | CCWWGG | 6 cut(s) | 480, 786, 1220, 1490, 2085, 3192 |
| Esp3I | CGTCTC | 1 cut(s) | 1490 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1335, 1367 |
| FaqI | GGGAC | 3 cut(s) | 294, 2830, 2913 |
| FauI | CCCGC | 1 cut(s) | 83 |
| FauNDI | CATATG | 3 cut(s) | 223, 2122, 2840 |
| FbaI | TGATCA | 1 cut(s) | 916 |
| FblI | GTMKAC | 2 cut(s) | 2510, 2806 |
| FriOI | GRGCYC | 2 cut(s) | 3153, 3192 |
| FspI | TGCGCA | 1 cut(s) | 2267 |
| GlaI | GCGC | 5 cut(s) | 71, 703, 2267, 3035, 3072 |
| GsaI | CCCAGC | 2 cut(s) | 1833, 3156 |
| GsuI | CTGGAG | 2 cut(s) | 981, 2372 |
| HaeII | RGCGCY | 3 cut(s) | 73, 705, 3074 |
| HaeIII | GGCC | 4 cut(s) | 563, 1857, 1977, 2801 |
| HapII | CCGG | 3 cut(s) | 399, 1858, 2536 |
| HgaI | GACGC | 3 cut(s) | 506, 526, 3203 |
| HhaI | GCGC | 5 cut(s) | 72, 704, 2268, 3036, 3073 |
| Hin1I | GRCGYC | 1 cut(s) | 70 |
| Hin6I | GCGC | 5 cut(s) | 70, 702, 2266, 3034, 3071 |
| HinP1I | GCGC | 5 cut(s) | 70, 702, 2266, 3034, 3071 |
| HincII | GTYRAC | 2 cut(s) | 31, 541 |
| HindII | GTYRAC | 2 cut(s) | 31, 541 |
| HindIII | AAGCTT | 3 cut(s) | 1883, 2270, 2930 |
| HpaII | CCGG | 3 cut(s) | 399, 1858, 2536 |
| HphI | GGTGA | 8 cut(s) | 59, 387, 524, 1301, 1352, 1543, 2517, 3191 |
| Hpy166II | GTNNAC | 6 cut(s) | 31, 541, 608, 2234, 2511, 2807 |
| Hpy8I | GTNNAC | 6 cut(s) | 31, 541, 608, 2234, 2511, 2807 |
| Hpy99I | CGWCG | 3 cut(s) | 29, 1089, 2949 |
| HpyAV | CCTTC | 8 cut(s) | 629, 1044, 1047, 1572, 2035, 2078, 2140, 2963 |
| HpyCH4III | ACNGT | 5 cut(s) | 1616, 1864, 1958, 2231, 3211 |
| HpyCH4IV | ACGT | 5 cut(s) | 322, 866, 1084, 1113, 2944 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 91, 277, 524, 1361, 2254, 2263, 2582, 2720, 3165 |
| HpySE526I | ACGT | 5 cut(s) | 322, 866, 1084, 1113, 2944 |
| Hsp92I | GRCGYC | 1 cut(s) | 70 |
| HspAI | GCGC | 5 cut(s) | 70, 702, 2266, 3034, 3071 |
| KasI | GGCGCC | 1 cut(s) | 69 |
| Ksp22I | TGATCA | 1 cut(s) | 916 |
| KspI | CCGCGG | 1 cut(s) | 12 |
| LmnI | GCTCC | 4 cut(s) | 333, 1360, 1784, 2838 |
| MaeII | ACGT | 5 cut(s) | 322, 866, 1084, 1113, 2944 |
| MaeIII | GTNAC | 7 cut(s) | 178, 393, 875, 1662, 1740, 2346, 2483 |
| MfeI | CAATTG | 3 cut(s) | 897, 938, 1299 |
| MflI | RGATCY | 5 cut(s) | 692, 730, 1528, 2003, 2116 |
| MhlI | GDGCHC | 4 cut(s) | 2068, 2236, 3153, 3192 |
| MlsI | TGGCCA | 2 cut(s) | 1977, 2801 |
| MluNI | TGGCCA | 2 cut(s) | 1977, 2801 |
| Mly113I | GGCGCC | 1 cut(s) | 70 |
| MlyI | GAGTC | 1 cut(s) | 872 |
| MmeI | TCCRAC | 3 cut(s) | 1635, 1971, 2295 |
| Mox20I | TGGCCA | 2 cut(s) | 1977, 2801 |
| MroXI | GAANNNNTTC | 1 cut(s) | 3139 |
| MscI | TGGCCA | 2 cut(s) | 1977, 2801 |
| MslI | CAYNNNNRTG | 3 cut(s) | 145, 1202, 2784 |
| Msp20I | TGGCCA | 2 cut(s) | 1977, 2801 |
| MspA1I | CMGCKG | 6 cut(s) | 11, 380, 2198, 2431, 3131, 3156 |
| MspI | CCGG | 3 cut(s) | 399, 1858, 2536 |
| MspR9I | CCNGG | 4 cut(s) | 399, 682, 1782, 3057 |
| MunI | CAATTG | 3 cut(s) | 897, 938, 1299 |
| MvaI | CCWGG | 3 cut(s) | 682, 1782, 3057 |
| MvnI | CGCG | 2 cut(s) | 11, 537 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 91, 277, 524, 1361, 2254, 2263, 2582, 2720, 3165 |
| NarI | GGCGCC | 1 cut(s) | 70 |
| NciI | CCSGG | 1 cut(s) | 399 |
| NcoI | CCATGG | 3 cut(s) | 480, 1490, 3192 |
| NdeI | CATATG | 3 cut(s) | 223, 2122, 2840 |
| NlaIV | GGNNCC | 7 cut(s) | 71, 421, 1500, 2065, 2249, 2846, 2901 |
| NmuCI | GTSAC | 4 cut(s) | 393, 875, 2346, 2483 |
| NsbI | TGCGCA | 1 cut(s) | 2267 |
| NspI | RCATGY | 3 cut(s) | 1379, 1901, 2813 |
| NspV | TTCGAA | 3 cut(s) | 1428, 1534, 2297 |
| OliI | CACNNNNGTG | 1 cut(s) | 145 |
| PaeI | GCATGC | 1 cut(s) | 1901 |
| PagI | TCATGA | 1 cut(s) | 2403 |
| PceI | AGGCCT | 1 cut(s) | 563 |
| PciI | ACATGT | 1 cut(s) | 2809 |
| PdmI | GAANNNNTTC | 1 cut(s) | 3139 |
| PfoI | TCCNGGA | 1 cut(s) | 1780 |
| PleI | GAGTC | 1 cut(s) | 872 |
| PluTI | GGCGCC | 1 cut(s) | 73 |
| PpsI | GAGTC | 1 cut(s) | 872 |
| Ppu21I | YACGTR | 1 cut(s) | 867 |
| PpuMI | RGGWCCY | 1 cut(s) | 2900 |
| PscI | ACATGT | 1 cut(s) | 2809 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1959 |
| PshBI | ATTAAT | 2 cut(s) | 1440, 2952 |
| PsiI | TTATAA | 1 cut(s) | 768 |
| Psp1406I | AACGTT | 2 cut(s) | 322, 1113 |
| Psp5II | RGGWCCY | 1 cut(s) | 2900 |
| Psp6I | CCWGG | 3 cut(s) | 680, 1780, 3055 |
| PspEI | GGTNACC | 1 cut(s) | 393 |
| PspFI | CCCAGC | 2 cut(s) | 1829, 3152 |
| PspGI | CCWGG | 3 cut(s) | 680, 1780, 3055 |
| PspN4I | GGNNCC | 7 cut(s) | 71, 421, 1500, 2065, 2249, 2846, 2901 |
| PspPI | GGNCC | 7 cut(s) | 477, 678, 1240, 1816, 2844, 2900, 3266 |
| PspPPI | RGGWCCY | 1 cut(s) | 2900 |
| PstI | CTGCAG | 2 cut(s) | 760, 2728 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2350 |
| PsuI | RGATCY | 5 cut(s) | 692, 730, 1528, 2003, 2116 |
| PvuII | CAGCTG | 4 cut(s) | 380, 2431, 3131, 3156 |
| RsaI | GTAC | 6 cut(s) | 935, 1196, 3012, 3025, 3240, 3293 |
| RsaNI | GTAC | 6 cut(s) | 934, 1195, 3011, 3024, 3239, 3292 |
| RseI | CAYNNNNRTG | 3 cut(s) | 145, 1202, 2784 |
| SacII | CCGCGG | 1 cut(s) | 12 |
| Sau96I | GGNCC | 7 cut(s) | 477, 678, 1240, 1816, 2844, 2900, 3266 |
| ScaI | AGTACT | 1 cut(s) | 3240 |
| SchI | GAGTC | 1 cut(s) | 872 |
| ScrFI | CCNGG | 4 cut(s) | 399, 682, 1782, 3057 |
| SduI | GDGCHC | 4 cut(s) | 2068, 2236, 3153, 3192 |
| SfcI | CTRYAG | 5 cut(s) | 588, 756, 2577, 2724, 3234 |
| SfoI | GGCGCC | 1 cut(s) | 71 |
| Sfr303I | CCGCGG | 1 cut(s) | 12 |
| SfuI | TTCGAA | 3 cut(s) | 1428, 1534, 2297 |
| SgrBI | CCGCGG | 1 cut(s) | 12 |
| SinI | GGWCC | 7 cut(s) | 477, 678, 1240, 1816, 2844, 2900, 3266 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 145, 1202, 2784 |
| SmlI | CTYRAG | 1 cut(s) | 2372 |
| SmoI | CTYRAG | 1 cut(s) | 2372 |
| SphI | GCATGC | 1 cut(s) | 1901 |
| SseBI | AGGCCT | 1 cut(s) | 563 |
| SsiI | CCGC | 8 cut(s) | 9, 11, 67, 76, 2198, 2201, 2242, 3083 |
| SspDI | GGCGCC | 1 cut(s) | 69 |
| SspI | AATATT | 3 cut(s) | 1371, 1765, 2398 |
| StuI | AGGCCT | 1 cut(s) | 563 |
| StyD4I | CCNGG | 4 cut(s) | 397, 680, 1780, 3055 |
| StyI | CCWWGG | 6 cut(s) | 480, 786, 1220, 1490, 2085, 3192 |
| TaaI | ACNGT | 5 cut(s) | 1616, 1864, 1958, 2231, 3211 |
| TaiI | ACGT | 5 cut(s) | 325, 869, 1087, 1116, 2947 |
| TaqI | TCGA | 7 cut(s) | 1002, 1087, 1428, 1534, 1846, 2297, 2947 |
| TatI | WGTACW | 3 cut(s) | 1194, 3238, 3291 |
| TauI | GCSGC | 4 cut(s) | 11, 70, 2201, 3086 |
| TscAI | CASTG | 6 cut(s) | 479, 1573, 2236, 2355, 2668, 3216 |
| TseFI | GTSAC | 4 cut(s) | 393, 875, 2346, 2483 |
| Tsp45I | GTSAC | 4 cut(s) | 393, 875, 2346, 2483 |
| TspGWI | ACGGA | 1 cut(s) | 2505 |
| TspRI | CASTG | 6 cut(s) | 479, 1573, 2236, 2355, 2668, 3216 |
| VneI | GTGCAC | 1 cut(s) | 2232 |
| VpaK11BI | GGWCC | 7 cut(s) | 477, 678, 1240, 1816, 2844, 2900, 3266 |
| VspI | ATTAAT | 2 cut(s) | 1440, 2952 |
| XapI | RAATTY | 9 cut(s) | 1139, 1451, 1511, 1537, 1603, 2155, 2171, 2279, 2642 |
| XbaI | TCTAGA | 4 cut(s) | 502, 745, 1697, 2213 |
| XceI | RCATGY | 3 cut(s) | 1379, 1901, 2813 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 672 |
| XmiI | GTMKAC | 2 cut(s) | 2510, 2806 |
| XmnI | GAANNNNTTC | 1 cut(s) | 3139 |
| ZrmI | AGTACT | 1 cut(s) | 3240 |