Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0004140

Physical Location & Seq

Genomic Coordinates Reverse (-)

9225417 .. 9226506

Gene Structure 1090 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g16130.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGATATTGACATGCTTAAATCATCATCAGCTGGTCATGATCTCCATCATCCTCATCACCACATGGACATGATGACAGTGATGATGCAGCAGCAGAGTCCTGAGTTCTACCATAACACTCCTCCTCCCACATTTTCTGAGATAGATTTCACTTGGGGATCATCAATCAGCCCCAACAACATTGGAACCGTAGTGCCACAACCCATGTTCCATAACCCAACTTCACCTTCACAGTCACAGCCCACATTTCCAAACCCCTCATCTTCCTCGGTCTCATTCCTTAGCGGTGGTCATCCTGTCCAATCCAATCCAATCAAACATGCCGCGGCTGCTGCTGGTGCAGTGTCAATCCCCAGTTCTAATTCATACGAAAAGAGAAACTCAATGGCTGCAATGAGGGAGATGATCTTTAGGATTGCGGCAATGCAGCCGATTCAGATAGACCCCGAAGCAGTGAAGCCGCCGAAGAGGAGGAACGTGAAGATTTCGAAAGATCCACAGAGCGTGGCAGCGAGGCACCGGAGGGAGAGGATCAGCGAGAGGATTAGGATCCTGCAGAGACTTGTACCAGGTGGGACTAAAATGGACACGGCTTCGATGCTAGACGAGGCCATACATTATGTCAAGTTCTTGAAGAAGCAGGTGCAGACTTTGGAAAGAGCTGGAGCTGATAGACCAGTTGGTGTTGGTTTCATGGGGCCTCAGTTGGGGATTGCAAATTACTCAGCTGGGTCTATGCAGATGCTTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

251

Amino Acids

27.6

Weight (kDa)

9.81

Isoelectric Point (pI)

62.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	171 - 212	3.5e-07	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	173 - 216	5.9e-12	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004140)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50330 AT5G67060 AT5G67060
fragaria_vesca	FvH4_1g16130 FvH4_2g34280
malus_domestica	MD02G1173400.v1.1 MD08G1098800.v1.1 MD15G1081100.v1.1 MD15G1284900.v1.1
prunus_persica	Prupe.1G434000_v2.0.a1 Prupe.7G132300_v2.0.a1
pyrus_communis	pycom15g07560 pycom15g07580
rosa_chinensis	RchiOBHm_Chr2g0105811 RchiOBHm_Chr6g0308101
rosa_laevigata	RLG00000010668 RLG00000017461
rosa_multiflora	Rmu_sc0005706.1_g000001 Rmu_sc0010497.1_g000002
rosa_roxburghii	Rroxscaffold_2G00137880 Rroxscaffold_7G00160540
rosa_rugosa	Rorug02G0130500 Rorug06G0364000
rosa_samantha	Rh2AG181700 Rh2BG191300 Rh2CG186000 Rh2DG187900 Rh6AG472700 Rh6BG483900 Rh6CG488800 Rh6DG475100
rosa_wichuraiana	Rw2G014230 Rw6G041250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	631
Acc36I	ACCTGC	1 cut(s)	631
AccB1I	GGYRCC	1 cut(s)	516
AccII	CGCG	1 cut(s)	326
AciI	CCGC	5 cut(s)	285, 324, 326, 419, 461
AclWI	GGATC	5 cut(s)	166, 488, 539, 544, 557
AfaI	GTAC	1 cut(s)	567
AfiI	CCNNNNNNNGG	1 cut(s)	707
AgsI	TTSAA	1 cut(s)	634
AjnI	CCWGG	1 cut(s)	568
AjuI	GAANNNNNNNTTGG	2 cut(s)	211, 243
AluBI	AGCT	4 cut(s)	32, 662, 668, 728
AluI	AGCT	4 cut(s)	32, 662, 668, 728
Alw26I	GTCTC	2 cut(s)	277, 553
AlwI	GGATC	5 cut(s)	166, 488, 539, 544, 557
AoxI	GGCC	2 cut(s)	609, 698
ApeKI	GCWGC	7 cut(s)	88, 91, 329, 332, 389, 427, 509
AspS9I	GGNCC	1 cut(s)	698
AsuHPI	GGTGA	2 cut(s)	50, 216
AsuII	TTCGAA	1 cut(s)	488
BamHI	GGATCC	1 cut(s)	549
BanI	GGYRCC	1 cut(s)	516
BbvI	GCAGC	7 cut(s)	100, 103, 316, 319, 376, 439, 521
BccI	CCATC	1 cut(s)	54
BceAI	ACGGC	1 cut(s)	606
BciT130I	CCWGG	1 cut(s)	570
BcoDI	GTCTC	2 cut(s)	277, 553
BfaI	CTAG	1 cut(s)	602
BfmI	CTRYAG	1 cut(s)	554
BfuAI	ACCTGC	1 cut(s)	631
Bme1390I	CCNGG	1 cut(s)	570
BmgT120I	GGNCC	1 cut(s)	698
BmiI	GGNNCC	4 cut(s)	187, 518, 551, 699
BmrFI	CCNGG	1 cut(s)	570
BmrI	ACTGGG	1 cut(s)	348
BmsI	GCATC	3 cut(s)	75, 588, 732
BmuI	ACTGGG	1 cut(s)	348
BpmI	CTGGAG	1 cut(s)	684
Bpu10I	CCTNAGC	1 cut(s)	281
Bpu14I	TTCGAA	1 cut(s)	488
BsaBI	GATNNNNATC	2 cut(s)	45, 548
BsaI	GGTCTC	1 cut(s)	277
BsaJI	CCNNGG	2 cut(s)	267, 324
BsaWI	WCCGGW	1 cut(s)	519
BsaXI	ACNNNNNCTCC	2 cut(s)	109, 139
Bsc4I	CCNNNNNNNGG	1 cut(s)	707
Bse1I	ACTGG	2 cut(s)	354, 677
Bse3DI	GCAATG	2 cut(s)	399, 429
Bse8I	GATNNNNATC	2 cut(s)	45, 548
BseBI	CCWGG	1 cut(s)	570
BseDI	CCNNGG	2 cut(s)	267, 324
BseGI	GGATG	2 cut(s)	49, 292
BseJI	GATNNNNATC	2 cut(s)	45, 548
BseLI	CCNNNNNNNGG	1 cut(s)	707
BseMI	GCAATG	2 cut(s)	399, 429
BseMII	CTCAG	4 cut(s)	93, 129, 716, 738
BseNI	ACTGG	2 cut(s)	354, 677
BseRI	GAGGAG	3 cut(s)	111, 114, 484
BseXI	GCAGC	7 cut(s)	100, 103, 316, 319, 376, 439, 521
BseYI	CCCAGC	1 cut(s)	728
BsgI	GTGCAG	2 cut(s)	360, 665
Bsh1236I	CGCG	1 cut(s)	326
BshFI	GGCC	2 cut(s)	611, 700
BshNI	GGYRCC	1 cut(s)	516
BsiSI	CCGG	1 cut(s)	520
BslFI	GGGAC	1 cut(s)	589
BslI	CCNNNNNNNGG	1 cut(s)	707
BsmAI	GTCTC	2 cut(s)	277, 553
BsmFI	GGGAC	1 cut(s)	589
BsnI	GGCC	2 cut(s)	611, 700
Bso31I	GGTCTC	1 cut(s)	277
Bsp119I	TTCGAA	1 cut(s)	488
Bsp143I	GATC	6 cut(s)	40, 158, 405, 493, 531, 549
BspACI	CCGC	5 cut(s)	285, 324, 326, 419, 461
BspANI	GGCC	2 cut(s)	611, 700
BspCNI	CTCAG	4 cut(s)	94, 130, 715, 737
BspFNI	CGCG	1 cut(s)	326
BspHI	TCATGA	1 cut(s)	37
BspLI	GGNNCC	4 cut(s)	187, 518, 551, 699
BspMAI	CTGCAG	1 cut(s)	558
BspMI	ACCTGC	1 cut(s)	631
BspPI	GGATC	5 cut(s)	166, 488, 539, 544, 557
BspT104I	TTCGAA	1 cut(s)	488
BspT107I	GGYRCC	1 cut(s)	516
BspTNI	GGTCTC	1 cut(s)	277
BsrDI	GCAATG	2 cut(s)	399, 429
BsrI	ACTGG	2 cut(s)	354, 677
BssECI	CCNNGG	2 cut(s)	267, 324
BssMI	GATC	6 cut(s)	40, 158, 405, 493, 531, 549
Bst2UI	CCWGG	1 cut(s)	570
Bst4CI	ACNGT	3 cut(s)	79, 190, 234
Bst6I	CTCTTC	1 cut(s)	461
BstBI	TTCGAA	1 cut(s)	488
BstDEI	CTNAG	6 cut(s)	102, 138, 281, 702, 724, 746
BstDSI	CCRYGG	1 cut(s)	324
BstF5I	GGATG	2 cut(s)	49, 292
BstFNI	CGCG	1 cut(s)	326
BstKTI	GATC	6 cut(s)	43, 161, 408, 496, 534, 552
BstMAI	GTCTC	2 cut(s)	277, 553
BstMBI	GATC	6 cut(s)	40, 158, 405, 493, 531, 549
BstMWI	GCNNNNNNNGC	3 cut(s)	329, 332, 338
BstNI	CCWGG	1 cut(s)	570
BstNSI	RCATGY	2 cut(s)	16, 323
BstSCI	CCNGG	1 cut(s)	568
BstSFI	CTRYAG	1 cut(s)	554
BstUI	CGCG	1 cut(s)	326
BstV1I	GCAGC	7 cut(s)	100, 103, 316, 319, 376, 439, 521
BstX2I	RGATCY	2 cut(s)	493, 549
BstYI	RGATCY	2 cut(s)	493, 549
BsuRI	GGCC	2 cut(s)	611, 700
BtgI	CCRYGG	1 cut(s)	324
BtsCI	GGATG	2 cut(s)	49, 292
BtsI	GCAGTG	2 cut(s)	348, 459
BtsIMutI	CAGTG	3 cut(s)	84, 348, 459
BveI	ACCTGC	1 cut(s)	631
CciI	TCATGA	1 cut(s)	37
Cfr13I	GGNCC	1 cut(s)	698
Cfr42I	CCGCGG	1 cut(s)	327
CsiI	ACCWGGT	1 cut(s)	568
Csp6I	GTAC	1 cut(s)	566
CviAII	CATG	7 cut(s)	13, 38, 64, 70, 205, 320, 694
CviQI	GTAC	1 cut(s)	566
DdeI	CTNAG	6 cut(s)	102, 138, 281, 702, 724, 746
DpnI	GATC	6 cut(s)	42, 160, 407, 495, 533, 551
DpnII	GATC	6 cut(s)	40, 158, 405, 493, 531, 549
Eam1104I	CTCTTC	1 cut(s)	461
EarI	CTCTTC	1 cut(s)	461
Eco31I	GGTCTC	1 cut(s)	277
EcoO109I	RGGNCCY	1 cut(s)	698
EcoRII	CCWGG	1 cut(s)	568
FaeI	CATG	7 cut(s)	16, 41, 67, 73, 208, 323, 697
FaqI	GGGAC	1 cut(s)	589
FatI	CATG	7 cut(s)	12, 37, 63, 69, 204, 319, 693
FokI	GGATG	2 cut(s)	36, 279
FspBI	CTAG	1 cut(s)	602
GsaI	CCCAGC	1 cut(s)	732
GsuI	CTGGAG	1 cut(s)	684
HaeIII	GGCC	2 cut(s)	611, 700
HapII	CCGG	1 cut(s)	520
Hin1II	CATG	7 cut(s)	16, 41, 67, 73, 208, 323, 697
HinfI	GANTC	2 cut(s)	97, 433
HpaII	CCGG	1 cut(s)	520
HphI	GGTGA	2 cut(s)	50, 216
Hpy188I	TCNGA	2 cut(s)	139, 438
Hpy188III	TCNNGA	3 cut(s)	38, 101, 631
HpyAV	CCTTC	1 cut(s)	237
HpyCH4III	ACNGT	3 cut(s)	79, 190, 234
HpyCH4IV	ACGT	1 cut(s)	477
HpyCH4V	TGCA	8 cut(s)	88, 341, 392, 427, 556, 646, 716, 739
HpyF10VI	GCNNNNNNNGC	3 cut(s)	329, 332, 338
HpyF3I	CTNAG	6 cut(s)	102, 138, 281, 702, 724, 746
HpySE526I	ACGT	1 cut(s)	477
Hsp92II	CATG	7 cut(s)	16, 41, 67, 73, 208, 323, 697
KspI	CCGCGG	1 cut(s)	327
Kzo9I	GATC	6 cut(s)	40, 158, 405, 493, 531, 549
LmnI	GCTCC	1 cut(s)	665
Lsp1109I	GCAGC	7 cut(s)	100, 103, 316, 319, 376, 439, 521
LweI	GCATC	3 cut(s)	75, 588, 732
MabI	ACCWGGT	1 cut(s)	568
MaeI	CTAG	1 cut(s)	602
MaeII	ACGT	1 cut(s)	477
MaeIII	GTNAC	1 cut(s)	234
MalI	GATC	6 cut(s)	42, 160, 407, 495, 533, 551
MboI	GATC	6 cut(s)	40, 158, 405, 493, 531, 549
MboII	GAAGA	4 cut(s)	255, 478, 493, 646
MflI	RGATCY	2 cut(s)	493, 549
MluCI	AATT	2 cut(s)	361, 718
MlyI	GAGTC	1 cut(s)	106
MseI	TTAA	1 cut(s)	18
MslI	CAYNNNNRTG	1 cut(s)	68
MspA1I	CMGCKG	3 cut(s)	32, 326, 728
MspI	CCGG	1 cut(s)	520
MspR9I	CCNGG	1 cut(s)	570
MvaI	CCWGG	1 cut(s)	570
MvnI	CGCG	1 cut(s)	326
MwoI	GCNNNNNNNGC	3 cut(s)	329, 332, 338
NdeII	GATC	6 cut(s)	40, 158, 405, 493, 531, 549
NlaIII	CATG	7 cut(s)	16, 41, 67, 73, 208, 323, 697
NlaIV	GGNNCC	4 cut(s)	187, 518, 551, 699
NmuCI	GTSAC	1 cut(s)	234
NspI	RCATGY	2 cut(s)	16, 323
NspV	TTCGAA	1 cut(s)	488
PagI	TCATGA	1 cut(s)	37
PaqCI	CACCTGC	1 cut(s)	631
PfeI	GAWTC	1 cut(s)	433
PleI	GAGTC	1 cut(s)	105
PpsI	GAGTC	1 cut(s)	105
Psp6I	CCWGG	1 cut(s)	568
PspFI	CCCAGC	1 cut(s)	728
PspGI	CCWGG	1 cut(s)	568
PspN4I	GGNNCC	4 cut(s)	187, 518, 551, 699
PspPI	GGNCC	1 cut(s)	698
PstI	CTGCAG	1 cut(s)	558
PsuI	RGATCY	2 cut(s)	493, 549
PvuII	CAGCTG	2 cut(s)	32, 728
RsaI	GTAC	1 cut(s)	567
RsaNI	GTAC	1 cut(s)	566
RseI	CAYNNNNRTG	1 cut(s)	68
SacII	CCGCGG	1 cut(s)	327
SaqAI	TTAA	1 cut(s)	18
Sau3AI	GATC	6 cut(s)	40, 158, 405, 493, 531, 549
Sau96I	GGNCC	1 cut(s)	698
SchI	GAGTC	1 cut(s)	106
ScrFI	CCNGG	1 cut(s)	570
SetI	ASST	8 cut(s)	34, 229, 480, 574, 645, 664, 670, 730
SexAI	ACCWGGT	1 cut(s)	568
SfaNI	GCATC	3 cut(s)	75, 588, 732
SfcI	CTRYAG	1 cut(s)	554
Sfr303I	CCGCGG	1 cut(s)	327
SfuI	TTCGAA	1 cut(s)	488
SgrBI	CCGCGG	1 cut(s)	327
SmiMI	CAYNNNNRTG	1 cut(s)	68
Sse9I	AATT	2 cut(s)	361, 718
SsiI	CCGC	5 cut(s)	285, 324, 326, 419, 461
SspMI	CTAG	1 cut(s)	602
StyD4I	CCNGG	1 cut(s)	568
TaaI	ACNGT	3 cut(s)	79, 190, 234
TaiI	ACGT	1 cut(s)	480
TaqI	TCGA	2 cut(s)	488, 596
TaqII	GACCGA	1 cut(s)	259
TasI	AATT	2 cut(s)	361, 718
TauI	GCSGC	4 cut(s)	326, 329, 422, 463
TfiI	GAWTC	1 cut(s)	433
Tru1I	TTAA	1 cut(s)	18
Tru9I	TTAA	1 cut(s)	18
TscAI	CASTG	3 cut(s)	84, 348, 459
TseFI	GTSAC	1 cut(s)	234
TseI	GCWGC	7 cut(s)	88, 91, 329, 332, 389, 427, 509
Tsp45I	GTSAC	1 cut(s)	234
TspDTI	ATGAA	2 cut(s)	354, 682
TspRI	CASTG	3 cut(s)	84, 348, 459
XceI	RCATGY	2 cut(s)	16, 323
XspI	CTAG	1 cut(s)	602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.