RLG00000010668

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0004140
Physical Location & Seq
Forward (+)
3461203 .. 3461925
723 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010668

Sequence Viewer

Length: 723 bp
ATGGAAATGATGATGATGATGCAAATGGATAAAATCTCCGAGCTCTGCGGCTCCTACAACGACGTCGTTTCCGACCTCCCGTCCTCTGAACACTTTCCTGGTAGTGCAACTTTCATGCCACAATACTGTCATGACCAAAACCCTCACAATGTTTCTTCACCTCCGCCCTCATTTCTTAACCTAAGCCCATCAACCATATCATTCACCAACTCACTTGAACAATCACCACAACCTCAACTGGCTTCCGACAAGCGTGCTTCAATGGCGGCGATGAGGGAGATGATATTCAGAATCGCCTCGATGCAGCCAATCCACATAGACCCGGAGTCGGTGAAGCCGCCGAAGAGAAGGAACGTGAAGATTTCCAAGGACCCTCAGAGCGTGGCGGCGCGCCACAGAAGGGAGAGGATTAGCGAGAGGATTAGAATACTCCAGAGACTAGTCCCCGGCGGGACTAAAATGGACACTGCGTCCATGCTGGACGAGGCTATTCACTACGTCAAGTTTTTGAAGTCTCAAGTTCAGACGCTGGAGAGAGCCGCCGTGAATAATAATAATAATAATAATAATAATAATAATAATAATAGGGTACCGCAAACCGGGATTGGTTTTCCTGTGGCCATGTCAAGTGGGAGTAATTACCTTTCTAATTCTATGGCCAAAGCGTACCAAGCTCATCCTCCGCAGCATCATCAGAATGTGCAGCAGTTTGGAGATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

241

Amino Acids

26.91

Weight (kDa)

9.14

Isoelectric Point (pI)

61.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 130 - 171 3.2e-07 Helix-loop-helix DNA-binding domain
bHLH_SAC51 PF23173 132 - 185 9.1e-13 Transcription factor SAC51 bHLH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 66
Acc65I GGTACC 1 cut(s) 589
AccB1I GGYRCC 1 cut(s) 589
AccII CGCG 1 cut(s) 391
AciI CCGC 9 cut(s) 48, 164, 266, 338, 386, 450, 540, 593, 683
AcoI YGGCCR 2 cut(s) 618, 657
AcyI GRCGYC 1 cut(s) 63
AfaI GTAC 2 cut(s) 591, 668
AfiI CCNNNNNNNGG 3 cut(s) 328, 400, 599
AgsI TTSAA 3 cut(s) 218, 261, 511
AhdI GACNNNNNGTC 3 cut(s) 79, 325, 469
AhlI ACTAGT 1 cut(s) 439
AjnI CCWGG 1 cut(s) 97
AluBI AGCT 2 cut(s) 43, 674
AluI AGCT 2 cut(s) 43, 674
Alw21I GWGCWC 1 cut(s) 45
Alw26I GTCTC 2 cut(s) 430, 519
AlwNI CAGNNNCTG 1 cut(s) 529
AoxI GGCC 2 cut(s) 618, 657
ApeKI GCWGC 3 cut(s) 304, 685, 703
AscI GGCGCGCC 1 cut(s) 389
Asp700I GAANNNNTTC 1 cut(s) 93
Asp718I GGTACC 1 cut(s) 589
AspLEI GCGC 2 cut(s) 391, 393
AspS9I GGNCC 1 cut(s) 370
AsuC2I CCSGG 3 cut(s) 323, 447, 601
AsuHPI GGTGA 4 cut(s) 150, 196, 216, 343
AvaII GGWCC 1 cut(s) 370
BalI TGGCCA 2 cut(s) 620, 659
BanI GGYRCC 1 cut(s) 589
BanII GRGCYC 1 cut(s) 45
Bbv12I GWGCWC 1 cut(s) 45
BbvI GCAGC 3 cut(s) 316, 697, 715
BccI CCATC 1 cut(s) 196
BceAI ACGGC 1 cut(s) 527
BcgI CGANNNNNNTGC 2 cut(s) 236, 270
BciT130I CCWGG 1 cut(s) 99
BcnI CCSGG 3 cut(s) 323, 447, 601
BcoDI GTCTC 2 cut(s) 430, 519
BcuI ACTAGT 1 cut(s) 439
BfaI CTAG 1 cut(s) 440
BisI GCNGC 8 cut(s) 49, 267, 305, 338, 387, 540, 686, 704
BlsI GCNGC 8 cut(s) 50, 268, 306, 339, 388, 541, 687, 705
Bme1390I CCNGG 4 cut(s) 99, 323, 447, 601
Bme18I GGWCC 1 cut(s) 370
BmeRI GACNNNNNGTC 3 cut(s) 79, 325, 469
BmgT120I GGNCC 1 cut(s) 370
BmiI GGNNCC 3 cut(s) 52, 372, 591
BmrFI CCNGG 4 cut(s) 99, 323, 447, 601
BmsI GCATC 4 cut(s) 9, 291, 697, 706
BpmI CTGGAG 2 cut(s) 416, 551
Bpu10I CCTNAGC 1 cut(s) 182
BpuEI CTTGAG 1 cut(s) 501
BpuMI CCSGG 3 cut(s) 323, 447, 601
BsaHI GRCGYC 1 cut(s) 63
BsaJI CCNNGG 2 cut(s) 366, 445
Bsc4I CCNNNNNNNGG 3 cut(s) 328, 400, 599
Bse1I ACTGG 1 cut(s) 243
BseBI CCWGG 1 cut(s) 99
BseDI CCNNGG 2 cut(s) 366, 445
BseGI GGATG 1 cut(s) 676
BseLI CCNNNNNNNGG 3 cut(s) 328, 400, 599
BseMII CTCAG 1 cut(s) 389
BseNI ACTGG 1 cut(s) 243
BsePI GCGCGC 1 cut(s) 389
BseXI GCAGC 3 cut(s) 316, 697, 715
BsgI GTGCAG 1 cut(s) 722
Bsh1236I CGCG 1 cut(s) 391
BshFI GGCC 2 cut(s) 620, 659
BshNI GGYRCC 1 cut(s) 589
BsiHKAI GWGCWC 1 cut(s) 45
BsiSI CCGG 3 cut(s) 323, 447, 600
BslFI GGGAC 2 cut(s) 428, 466
BslI CCNNNNNNNGG 3 cut(s) 328, 400, 599
BsmAI GTCTC 2 cut(s) 430, 519
BsmFI GGGAC 2 cut(s) 428, 466
BsnI GGCC 2 cut(s) 620, 659
Bsp1286I GDGCHC 1 cut(s) 45
BspACI CCGC 9 cut(s) 48, 164, 266, 338, 386, 450, 540, 593, 683
BspANI GGCC 2 cut(s) 620, 659
BspCNI CTCAG 1 cut(s) 388
BspFNI CGCG 1 cut(s) 391
BspHI TCATGA 1 cut(s) 130
BspLI GGNNCC 3 cut(s) 52, 372, 591
BspT107I GGYRCC 1 cut(s) 589
BsrI ACTGG 1 cut(s) 243
BssECI CCNNGG 2 cut(s) 366, 445
BssHII GCGCGC 1 cut(s) 389
BssNI GRCGYC 1 cut(s) 63
BssT1I CCWWGG 1 cut(s) 366
Bst2UI CCWGG 1 cut(s) 99
Bst4CI ACNGT 1 cut(s) 128
Bst6I CTCTTC 1 cut(s) 338
BstACI GRCGYC 1 cut(s) 63
BstC8I GCNNGC 2 cut(s) 255, 391
BstDEI CTNAG 2 cut(s) 182, 375
BstF5I GGATG 1 cut(s) 676
BstFNI CGCG 1 cut(s) 391
BstHHI GCGC 2 cut(s) 391, 393
BstMAI GTCTC 2 cut(s) 430, 519
BstMWI GCNNNNNNNGC 2 cut(s) 263, 671
BstNI CCWGG 1 cut(s) 99
BstSCI CCNGG 4 cut(s) 97, 321, 445, 599
BstUI CGCG 1 cut(s) 391
BstV1I GCAGC 3 cut(s) 316, 697, 715
BsuRI GGCC 2 cut(s) 620, 659
BtgZI GCGATG 1 cut(s) 284
BtsCI GGATG 1 cut(s) 676
BtsI GCAGTG 1 cut(s) 465
BtsIMutI CAGTG 1 cut(s) 465
Cac8I GCNNGC 2 cut(s) 255, 391
CaiI CAGNNNCTG 1 cut(s) 529
CciI TCATGA 1 cut(s) 130
CfoI GCGC 2 cut(s) 391, 393
Cfr13I GGNCC 1 cut(s) 370
CseI GACGC 2 cut(s) 459, 535
Csp6I GTAC 2 cut(s) 590, 667
CviAII CATG 4 cut(s) 115, 131, 475, 622
CviQI GTAC 2 cut(s) 590, 667
DdeI CTNAG 2 cut(s) 182, 375
DriI GACNNNNNGTC 3 cut(s) 79, 325, 469
EaeI YGGCCR 2 cut(s) 618, 657
Eam1104I CTCTTC 1 cut(s) 338
Eam1105I GACNNNNNGTC 3 cut(s) 79, 325, 469
EarI CTCTTC 1 cut(s) 338
EciI GGCGGA 1 cut(s) 153
Ecl136II GAGCTC 1 cut(s) 43
Eco130I CCWWGG 1 cut(s) 366
Eco24I GRGCYC 1 cut(s) 45
Eco47I GGWCC 1 cut(s) 370
Eco53kI GAGCTC 1 cut(s) 43
EcoICRI GAGCTC 1 cut(s) 43
EcoO109I RGGNCCY 1 cut(s) 370
EcoRII CCWGG 1 cut(s) 97
EcoT14I CCWWGG 1 cut(s) 366
EcoT38I GRGCYC 1 cut(s) 45
ErhI CCWWGG 1 cut(s) 366
FaeI CATG 4 cut(s) 118, 134, 478, 625
FaiI YATR 7 cut(s) 116, 132, 197, 317, 476, 623, 656
FaqI GGGAC 2 cut(s) 428, 466
FatI CATG 4 cut(s) 114, 130, 474, 621
FauI CCCGC 1 cut(s) 443
Fnu4HI GCNGC 8 cut(s) 49, 267, 305, 338, 387, 540, 686, 704
FokI GGATG 1 cut(s) 663
FriOI GRGCYC 1 cut(s) 45
Fsp4HI GCNGC 8 cut(s) 49, 267, 305, 338, 387, 540, 686, 704
FspBI CTAG 1 cut(s) 440
GlaI GCGC 2 cut(s) 390, 392
GluI GCNGC 8 cut(s) 49, 267, 305, 338, 387, 540, 686, 704
GsuI CTGGAG 2 cut(s) 416, 551
HaeIII GGCC 2 cut(s) 620, 659
HapII CCGG 3 cut(s) 323, 447, 600
HgaI GACGC 2 cut(s) 459, 535
HhaI GCGC 2 cut(s) 391, 393
Hin1I GRCGYC 1 cut(s) 63
Hin1II CATG 4 cut(s) 118, 134, 478, 625
Hin6I GCGC 2 cut(s) 389, 391
HinP1I GCGC 2 cut(s) 389, 391
HinfI GANTC 2 cut(s) 291, 326
HpaII CCGG 3 cut(s) 323, 447, 600
HphI GGTGA 4 cut(s) 150, 196, 216, 343
Hpy188I TCNGA 8 cut(s) 40, 73, 88, 247, 290, 378, 525, 696
Hpy188III TCNNGA 2 cut(s) 131, 433
Hpy99I CGWCG 2 cut(s) 65, 68
HpyAV CCTTC 2 cut(s) 342, 393
HpyCH4III ACNGT 1 cut(s) 128
HpyCH4IV ACGT 3 cut(s) 63, 354, 498
HpyCH4V TGCA 4 cut(s) 22, 107, 304, 703
HpyF10VI GCNNNNNNNGC 2 cut(s) 263, 671
HpyF3I CTNAG 2 cut(s) 182, 375
HpySE526I ACGT 3 cut(s) 63, 354, 498
Hsp92I GRCGYC 1 cut(s) 63
Hsp92II CATG 4 cut(s) 118, 134, 478, 625
HspAI GCGC 2 cut(s) 389, 391
KpnI GGTACC 1 cut(s) 593
LmnI GCTCC 1 cut(s) 56
Lsp1109I GCAGC 3 cut(s) 316, 697, 715
LweI GCATC 4 cut(s) 9, 291, 697, 706
MaeI CTAG 1 cut(s) 440
MaeII ACGT 3 cut(s) 63, 354, 498
MboII GAAGA 3 cut(s) 147, 355, 370
MhlI GDGCHC 1 cut(s) 45
MlsI TGGCCA 2 cut(s) 620, 659
MluCI AATT 2 cut(s) 637, 649
MluNI TGGCCA 2 cut(s) 620, 659
MlyI GAGTC 1 cut(s) 335
MmeI TCCRAC 2 cut(s) 96, 270
Mox20I TGGCCA 2 cut(s) 620, 659
MroXI GAANNNNTTC 1 cut(s) 93
MscI TGGCCA 2 cut(s) 620, 659
MseI TTAA 1 cut(s) 177
MslI CAYNNNNRTG 1 cut(s) 696
Msp20I TGGCCA 2 cut(s) 620, 659
MspI CCGG 3 cut(s) 323, 447, 600
MspR9I CCNGG 4 cut(s) 99, 323, 447, 601
MvaI CCWGG 1 cut(s) 99
MvnI CGCG 1 cut(s) 391
MwoI GCNNNNNNNGC 2 cut(s) 263, 671
NciI CCSGG 3 cut(s) 323, 447, 601
NlaIII CATG 4 cut(s) 118, 134, 478, 625
NlaIV GGNNCC 3 cut(s) 52, 372, 591
PagI TCATGA 1 cut(s) 130
PalAI GGCGCGCC 1 cut(s) 389
PauI GCGCGC 1 cut(s) 389
PcsI WCGNNNNNNNCGW 1 cut(s) 69
PdmI GAANNNNTTC 1 cut(s) 93
PfeI GAWTC 1 cut(s) 291
PkrI GCNGC 8 cut(s) 50, 268, 306, 339, 388, 541, 687, 705
PleI GAGTC 1 cut(s) 334
PpsI GAGTC 1 cut(s) 334
PpuMI RGGWCCY 1 cut(s) 370
Psp124BI GAGCTC 1 cut(s) 45
Psp5II RGGWCCY 1 cut(s) 370
Psp6I CCWGG 1 cut(s) 97
PspGI CCWGG 1 cut(s) 97
PspN4I GGNNCC 3 cut(s) 52, 372, 591
PspPI GGNCC 1 cut(s) 370
PspPPI RGGWCCY 1 cut(s) 370
PstNI CAGNNNCTG 1 cut(s) 529
PteI GCGCGC 1 cut(s) 389
RsaI GTAC 2 cut(s) 591, 668
RsaNI GTAC 2 cut(s) 590, 667
RseI CAYNNNNRTG 1 cut(s) 696
SacI GAGCTC 1 cut(s) 45
SaqAI TTAA 1 cut(s) 177
SatI GCNGC 8 cut(s) 49, 267, 305, 338, 387, 540, 686, 704
Sau96I GGNCC 1 cut(s) 370
SchI GAGTC 1 cut(s) 335
ScrFI CCNGG 4 cut(s) 99, 323, 447, 601
SduI GDGCHC 1 cut(s) 45
SfaNI GCATC 4 cut(s) 9, 291, 697, 706
SgsI GGCGCGCC 1 cut(s) 389
SinI GGWCC 1 cut(s) 370
SmiMI CAYNNNNRTG 1 cut(s) 696
SmlI CTYRAG 1 cut(s) 516
SmoI CTYRAG 1 cut(s) 516
SpeI ACTAGT 1 cut(s) 439
Sse9I AATT 2 cut(s) 637, 649
SsiI CCGC 9 cut(s) 48, 164, 266, 338, 386, 450, 540, 593, 683
SspMI CTAG 1 cut(s) 440
SstI GAGCTC 1 cut(s) 45
StyD4I CCNGG 4 cut(s) 97, 321, 445, 599
StyI CCWWGG 1 cut(s) 366
TaaI ACNGT 1 cut(s) 128
TaiI ACGT 3 cut(s) 66, 357, 501
TaqI TCGA 1 cut(s) 299
TasI AATT 2 cut(s) 637, 649
TauI GCSGC 5 cut(s) 51, 269, 340, 389, 542
TfiI GAWTC 1 cut(s) 291
Tru1I TTAA 1 cut(s) 177
Tru9I TTAA 1 cut(s) 177
TscAI CASTG 1 cut(s) 472
TseI GCWGC 3 cut(s) 304, 685, 703
TspDTI ATGAA 1 cut(s) 103
TspRI CASTG 1 cut(s) 472
VpaK11BI GGWCC 1 cut(s) 370
XmnI GAANNNNTTC 1 cut(s) 93
XspI CTAG 1 cut(s) 440
ZraI GACGTC 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.