Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0004140

Physical Location & Seq

Genomic Coordinates Forward (+)

25507405 .. 25508489

Gene Structure 1085 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g34280.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGATATCAACCAACTAAAATCAGAGGAGCAGATGGAAATGATGATGATGATGCAAATGGATAAAATCTCCGAGCTCTGTGGCGCCTACAACGACGTCGTTTCCGACCTCCCTTCATCTGAACACTTTTCTGGTAGTGCAACTTCCATGCCACATTACAGCCATGACCAAAACCCTCACACTGTTTCTTCTTCACCTCCATCCTCATTTCTTAACCTACACCCTTCAACCATATCATTCACCAACTCACTTGAACAATCACCAGAACCTCAACTGGCATCGGATAAGCGTGCTTCAATGGCGGCTATGAGGGAGATGATATTCAGAATCGCCTCGATGCAGCCAATCCACATAGACCCGGAGTCGGTGAAGCCGCCAAAGAGAAGGAACGTGAAGATTTCCAAGGACCCTCAGAGCGTGGCGGCTCGTCACAGGAGGGAGAGGATTAGCGAGAGGATAAGAATACTCCAGCGACTAGTCCCCGGGGGAACTAAAATGGACACTGCATCCATGCTGGACGAGGCTATTCACTACGTCAAATTCTTGAAGTCTCAAGTTCAGACGCTGGAGAGAGCCGCCGTGAATAATAACAATAACAGGGTACAACAAACCGGGATTGGTTTTCCGGTGGCGATGTCAAGTGGGAGTAATTACCTTTCTAATTCTATGGCCAAAGCGTACCAAGCCCATCCTCCGCAGCATCATCAGAATGTGCAGCATTTCGGCGACGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

245

Amino Acids

27.37

Weight (kDa)

7.96

Isoelectric Point (pI)

56.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	142 - 183	3.3e-07	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	144 - 197	9.4e-13	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004140)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50330 AT5G67060 AT5G67060
fragaria_vesca	FvH4_1g16130 FvH4_2g34280
malus_domestica	MD02G1173400.v1.1 MD08G1098800.v1.1 MD15G1081100.v1.1 MD15G1284900.v1.1
prunus_persica	Prupe.1G434000_v2.0.a1 Prupe.7G132300_v2.0.a1
pyrus_communis	pycom15g07560 pycom15g07580
rosa_chinensis	RchiOBHm_Chr2g0105811 RchiOBHm_Chr6g0308101
rosa_laevigata	RLG00000010668 RLG00000017461
rosa_multiflora	Rmu_sc0005706.1_g000001 Rmu_sc0010497.1_g000002
rosa_roxburghii	Rroxscaffold_2G00137880 Rroxscaffold_7G00160540
rosa_rugosa	Rorug02G0130500 Rorug06G0364000
rosa_samantha	Rh2AG181700 Rh2BG191300 Rh2CG186000 Rh2DG187900 Rh6AG472700 Rh6BG483900 Rh6CG488800 Rh6DG475100
rosa_wichuraiana	Rw2G014230 Rw6G041250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	99
AccB1I	GGYRCC	1 cut(s)	83
AciI	CCGC	5 cut(s)	302, 374, 422, 576, 695
AcoI	YGGCCR	1 cut(s)	669
AcsI	RAATTY	1 cut(s)	539
AcyI	GRCGYC	2 cut(s)	84, 96
AfaI	GTAC	2 cut(s)	603, 680
AfiI	CCNNNNNNNGG	1 cut(s)	364
AgsI	TTSAA	4 cut(s)	228, 254, 297, 547
AhdI	GACNNNNNGTC	1 cut(s)	361
AhlI	ACTAGT	1 cut(s)	475
AluBI	AGCT	1 cut(s)	76
AluI	AGCT	1 cut(s)	76
Alw21I	GWGCWC	1 cut(s)	78
Alw26I	GTCTC	1 cut(s)	555
AlwNI	CAGNNNCTG	1 cut(s)	565
Ama87I	CYCGRG	1 cut(s)	482
AoxI	GGCC	1 cut(s)	669
ApeKI	GCWGC	3 cut(s)	340, 697, 715
ApoI	RAATTY	1 cut(s)	539
AspLEI	GCGC	1 cut(s)	86
AspS9I	GGNCC	1 cut(s)	406
AsuC2I	CCSGG	4 cut(s)	359, 483, 484, 613
AsuHPI	GGTGA	4 cut(s)	186, 232, 252, 379
AvaI	CYCGRG	1 cut(s)	482
AvaII	GGWCC	1 cut(s)	406
BalI	TGGCCA	1 cut(s)	671
BanI	GGYRCC	1 cut(s)	83
BanII	GRGCYC	1 cut(s)	78
BarI	GAAGNNNNNNTAC	2 cut(s)	127, 159
Bbv12I	GWGCWC	1 cut(s)	78
BbvI	GCAGC	3 cut(s)	352, 709, 727
BccI	CCATC	3 cut(s)	28, 208, 696
BceAI	ACGGC	1 cut(s)	563
BcnI	CCSGG	4 cut(s)	359, 483, 484, 613
BcoDI	GTCTC	1 cut(s)	555
BcuI	ACTAGT	1 cut(s)	475
BfaI	CTAG	1 cut(s)	476
BfoI	RGCGCY	1 cut(s)	87
BisI	GCNGC	7 cut(s)	303, 341, 374, 423, 576, 698, 716
BlsI	GCNGC	7 cut(s)	304, 342, 375, 424, 577, 699, 717
Bme1390I	CCNGG	4 cut(s)	359, 483, 484, 613
Bme18I	GGWCC	1 cut(s)	406
BmeRI	GACNNNNNGTC	1 cut(s)	361
BmeT110I	CYCGRG	1 cut(s)	482
BmgT120I	GGNCC	1 cut(s)	406
BmiI	GGNNCC	2 cut(s)	85, 408
BmrFI	CCNGG	4 cut(s)	359, 483, 484, 613
BmsI	GCATC	5 cut(s)	42, 287, 327, 515, 709
BpmI	CTGGAG	2 cut(s)	452, 587
BpuEI	CTTGAG	1 cut(s)	537
BpuMI	CCSGG	4 cut(s)	359, 483, 484, 613
BsaHI	GRCGYC	2 cut(s)	84, 96
BsaJI	CCNNGG	4 cut(s)	402, 481, 482, 483
BsaWI	WCCGGW	1 cut(s)	625
Bsc4I	CCNNNNNNNGG	1 cut(s)	364
Bse1I	ACTGG	1 cut(s)	279
BseDI	CCNNGG	4 cut(s)	402, 481, 482, 483
BseGI	GGATG	3 cut(s)	200, 506, 688
BseLI	CCNNNNNNNGG	1 cut(s)	364
BseMII	CTCAG	1 cut(s)	425
BseNI	ACTGG	1 cut(s)	279
BseRI	GAGGAG	1 cut(s)	41
BseXI	GCAGC	3 cut(s)	352, 709, 727
BsgI	GTGCAG	1 cut(s)	734
BshFI	GGCC	1 cut(s)	671
BshNI	GGYRCC	1 cut(s)	83
BsiHKAI	GWGCWC	1 cut(s)	78
BsiHKCI	CYCGRG	1 cut(s)	482
BsiSI	CCGG	4 cut(s)	359, 483, 612, 626
BslFI	GGGAC	1 cut(s)	464
BslI	CCNNNNNNNGG	1 cut(s)	364
BsmAI	GTCTC	1 cut(s)	555
BsmFI	GGGAC	1 cut(s)	464
BsnI	GGCC	1 cut(s)	671
BsoBI	CYCGRG	1 cut(s)	482
Bsp1286I	GDGCHC	1 cut(s)	78
BspACI	CCGC	5 cut(s)	302, 374, 422, 576, 695
BspANI	GGCC	1 cut(s)	671
BspCNI	CTCAG	1 cut(s)	424
BspLI	GGNNCC	2 cut(s)	85, 408
BspT107I	GGYRCC	1 cut(s)	83
BsrI	ACTGG	1 cut(s)	279
BssECI	CCNNGG	4 cut(s)	402, 481, 482, 483
BssNI	GRCGYC	2 cut(s)	84, 96
BssT1I	CCWWGG	1 cut(s)	402
Bst4CI	ACNGT	1 cut(s)	184
BstACI	GRCGYC	2 cut(s)	84, 96
BstC8I	GCNNGC	1 cut(s)	291
BstDEI	CTNAG	1 cut(s)	411
BstF5I	GGATG	3 cut(s)	200, 506, 688
BstH2I	RGCGCY	1 cut(s)	87
BstHHI	GCGC	1 cut(s)	86
BstMAI	GTCTC	1 cut(s)	555
BstMWI	GCNNNNNNNGC	2 cut(s)	299, 683
BstSCI	CCNGG	4 cut(s)	357, 481, 482, 611
BstV1I	GCAGC	3 cut(s)	352, 709, 727
BsuRI	GGCC	1 cut(s)	671
BtgZI	GCGATG	1 cut(s)	647
BtsCI	GGATG	3 cut(s)	200, 506, 688
BtsI	GCAGTG	1 cut(s)	501
BtsIMutI	CAGTG	2 cut(s)	180, 501
Cac8I	GCNNGC	1 cut(s)	291
CaiI	CAGNNNCTG	1 cut(s)	565
CfoI	GCGC	1 cut(s)	86
Cfr13I	GGNCC	1 cut(s)	406
Cfr9I	CCCGGG	1 cut(s)	482
CseI	GACGC	1 cut(s)	571
Csp6I	GTAC	2 cut(s)	602, 679
CviAII	CATG	3 cut(s)	148, 164, 511
CviQI	GTAC	2 cut(s)	602, 679
DdeI	CTNAG	1 cut(s)	411
DinI	GGCGCC	1 cut(s)	85
DriI	GACNNNNNGTC	1 cut(s)	361
EaeI	YGGCCR	1 cut(s)	669
Eam1105I	GACNNNNNGTC	1 cut(s)	361
Ecl136II	GAGCTC	1 cut(s)	76
Eco130I	CCWWGG	1 cut(s)	402
Eco24I	GRGCYC	1 cut(s)	78
Eco32I	GATATC	1 cut(s)	7
Eco47I	GGWCC	1 cut(s)	406
Eco53kI	GAGCTC	1 cut(s)	76
Eco88I	CYCGRG	1 cut(s)	482
EcoICRI	GAGCTC	1 cut(s)	76
EcoO109I	RGGNCCY	1 cut(s)	406
EcoRV	GATATC	1 cut(s)	7
EcoT14I	CCWWGG	1 cut(s)	402
EcoT38I	GRGCYC	1 cut(s)	78
EgeI	GGCGCC	1 cut(s)	85
EheI	GGCGCC	1 cut(s)	85
ErhI	CCWWGG	1 cut(s)	402
FaeI	CATG	3 cut(s)	151, 167, 514
FaiI	YATR	7 cut(s)	149, 165, 233, 308, 353, 512, 668
FaqI	GGGAC	1 cut(s)	464
FatI	CATG	3 cut(s)	147, 163, 510
Fnu4HI	GCNGC	7 cut(s)	303, 341, 374, 423, 576, 698, 716
FokI	GGATG	3 cut(s)	187, 493, 675
FriOI	GRGCYC	1 cut(s)	78
Fsp4HI	GCNGC	7 cut(s)	303, 341, 374, 423, 576, 698, 716
FspBI	CTAG	1 cut(s)	476
GlaI	GCGC	1 cut(s)	85
GluI	GCNGC	7 cut(s)	303, 341, 374, 423, 576, 698, 716
GsuI	CTGGAG	2 cut(s)	452, 587
HaeII	RGCGCY	1 cut(s)	87
HaeIII	GGCC	1 cut(s)	671
HapII	CCGG	4 cut(s)	359, 483, 612, 626
HgaI	GACGC	1 cut(s)	571
HhaI	GCGC	1 cut(s)	86
Hin1I	GRCGYC	2 cut(s)	84, 96
Hin1II	CATG	3 cut(s)	151, 167, 514
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HinfI	GANTC	2 cut(s)	327, 362
HpaII	CCGG	4 cut(s)	359, 483, 612, 626
HphI	GGTGA	4 cut(s)	186, 232, 252, 379
Hpy188I	TCNGA	9 cut(s)	25, 73, 106, 121, 283, 326, 414, 561, 708
Hpy188III	TCNNGA	1 cut(s)	544
Hpy99I	CGWCG	3 cut(s)	98, 101, 731
HpyAV	CCTTC	3 cut(s)	123, 234, 378
HpyCH4III	ACNGT	1 cut(s)	184
HpyCH4IV	ACGT	3 cut(s)	96, 390, 534
HpyCH4V	TGCA	5 cut(s)	55, 140, 340, 506, 715
HpyF10VI	GCNNNNNNNGC	2 cut(s)	299, 683
HpyF3I	CTNAG	1 cut(s)	411
HpySE526I	ACGT	3 cut(s)	96, 390, 534
Hsp92I	GRCGYC	2 cut(s)	84, 96
Hsp92II	CATG	3 cut(s)	151, 167, 514
HspAI	GCGC	1 cut(s)	84
KasI	GGCGCC	1 cut(s)	83
LmnI	GCTCC	1 cut(s)	28
Lsp1109I	GCAGC	3 cut(s)	352, 709, 727
LweI	GCATC	5 cut(s)	42, 287, 327, 515, 709
MaeI	CTAG	1 cut(s)	476
MaeII	ACGT	3 cut(s)	96, 390, 534
MaeIII	GTNAC	1 cut(s)	428
MboII	GAAGA	3 cut(s)	180, 183, 406
MhlI	GDGCHC	1 cut(s)	78
MlsI	TGGCCA	1 cut(s)	671
MluCI	AATT	3 cut(s)	539, 649, 661
MluNI	TGGCCA	1 cut(s)	671
Mly113I	GGCGCC	1 cut(s)	84
MlyI	GAGTC	1 cut(s)	371
MmeI	TCCRAC	1 cut(s)	129
Mox20I	TGGCCA	1 cut(s)	671
MscI	TGGCCA	1 cut(s)	671
MseI	TTAA	1 cut(s)	213
MslI	CAYNNNNRTG	1 cut(s)	708
Msp20I	TGGCCA	1 cut(s)	671
MspI	CCGG	4 cut(s)	359, 483, 612, 626
MspR9I	CCNGG	4 cut(s)	359, 483, 484, 613
MwoI	GCNNNNNNNGC	2 cut(s)	299, 683
NarI	GGCGCC	1 cut(s)	84
NciI	CCSGG	4 cut(s)	359, 483, 484, 613
NlaIII	CATG	3 cut(s)	151, 167, 514
NlaIV	GGNNCC	2 cut(s)	85, 408
NmuCI	GTSAC	1 cut(s)	428
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PfeI	GAWTC	1 cut(s)	327
PkrI	GCNGC	7 cut(s)	304, 342, 375, 424, 577, 699, 717
PleI	GAGTC	1 cut(s)	370
PluTI	GGCGCC	1 cut(s)	87
PpsI	GAGTC	1 cut(s)	370
PpuMI	RGGWCCY	1 cut(s)	406
Psp124BI	GAGCTC	1 cut(s)	78
Psp5II	RGGWCCY	1 cut(s)	406
PspN4I	GGNNCC	2 cut(s)	85, 408
PspPI	GGNCC	1 cut(s)	406
PspPPI	RGGWCCY	1 cut(s)	406
PstNI	CAGNNNCTG	1 cut(s)	565
RsaI	GTAC	2 cut(s)	603, 680
RsaNI	GTAC	2 cut(s)	602, 679
RseI	CAYNNNNRTG	1 cut(s)	708
SacI	GAGCTC	1 cut(s)	78
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	7 cut(s)	303, 341, 374, 423, 576, 698, 716
Sau96I	GGNCC	1 cut(s)	406
SchI	GAGTC	1 cut(s)	371
ScrFI	CCNGG	4 cut(s)	359, 483, 484, 613
SduI	GDGCHC	1 cut(s)	78
SetI	ASST	9 cut(s)	78, 99, 111, 199, 219, 271, 393, 537, 657
SfaNI	GCATC	5 cut(s)	42, 287, 327, 515, 709
SfoI	GGCGCC	1 cut(s)	85
SinI	GGWCC	1 cut(s)	406
SmaI	CCCGGG	1 cut(s)	484
SmiMI	CAYNNNNRTG	1 cut(s)	708
SmlI	CTYRAG	1 cut(s)	552
SmoI	CTYRAG	1 cut(s)	552
SpeI	ACTAGT	1 cut(s)	475
Sse9I	AATT	3 cut(s)	539, 649, 661
SsiI	CCGC	5 cut(s)	302, 374, 422, 576, 695
SspDI	GGCGCC	1 cut(s)	83
SspMI	CTAG	1 cut(s)	476
SstI	GAGCTC	1 cut(s)	78
StyD4I	CCNGG	4 cut(s)	357, 481, 482, 611
StyI	CCWWGG	1 cut(s)	402
TaaI	ACNGT	1 cut(s)	184
TaiI	ACGT	3 cut(s)	99, 393, 537
TaqI	TCGA	1 cut(s)	335
TasI	AATT	3 cut(s)	539, 649, 661
TauI	GCSGC	4 cut(s)	305, 376, 425, 578
TfiI	GAWTC	1 cut(s)	327
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TscAI	CASTG	2 cut(s)	187, 508
TseFI	GTSAC	1 cut(s)	428
TseI	GCWGC	3 cut(s)	340, 697, 715
Tsp45I	GTSAC	1 cut(s)	428
TspDTI	ATGAA	1 cut(s)	105
TspMI	CCCGGG	1 cut(s)	482
TspRI	CASTG	2 cut(s)	187, 508
VpaK11BI	GGWCC	1 cut(s)	406
XapI	RAATTY	1 cut(s)	539
XmaI	CCCGGG	1 cut(s)	482
XspI	CTAG	1 cut(s)	476
ZraI	GACGTC	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.