Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004140

Physical Location & Seq

Genomic Coordinates Forward (+)

75867549 .. 75868070

Gene Structure 522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00137880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGTTCCATAACCCAACTTCATCCTCACAATCACAGCCCACATTGCTAAATCCAAACCCTTCATCCTCCTCGGTCTCATTCCTTAGCGGTGCTACTCCAATCCATTCCAATCCAATCAAACAGGCCGCGGCTGCTGCTGGTGCACTGTCAATCCCCGGTACTAATTCATATGAAAAGCGAAGCTCAATGGCTGCAATGAGGGAGATGATCTTTAGGATTGCGGCAATGCAGCCGATTCAGATAGACCCCGAAGCAGTGAAGCCGCCGAAGAGGAGGAATGTGAAGATTTCGAAAGATCCACAGAGCGTGGCAGCGAGGCATAGGAGGGAGAGGATCAGCGAGAGGATTAGGATCCTGCAGAGGCTTGTTCCGGGTGGGACTAAAATGGACACGGCTTCGATGCTAGACGAGGCTATACATTATGTGAAGTTCTTGAAGAAGCAGGTGTGCAGACTTTGGAAAGAGCTGGAGCTGATAGACCAGTTGGTGTTGGCTTCATGGGGCCTCAGTTGGGGAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

173

Amino Acids

19.23

Weight (kDa)

10.32

Isoelectric Point (pI)

53.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	105 - 146	1.9e-07	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	107 - 148	6e-12	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004140)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50330 AT5G67060 AT5G67060
fragaria_vesca	FvH4_1g16130 FvH4_2g34280
malus_domestica	MD02G1173400.v1.1 MD08G1098800.v1.1 MD15G1081100.v1.1 MD15G1284900.v1.1
prunus_persica	Prupe.1G434000_v2.0.a1 Prupe.7G132300_v2.0.a1
pyrus_communis	pycom15g07560 pycom15g07580
rosa_chinensis	RchiOBHm_Chr2g0105811 RchiOBHm_Chr6g0308101
rosa_laevigata	RLG00000010668 RLG00000017461
rosa_multiflora	Rmu_sc0005706.1_g000001 Rmu_sc0010497.1_g000002
rosa_roxburghii	Rroxscaffold_2G00137880 Rroxscaffold_7G00160540
rosa_rugosa	Rorug02G0130500 Rorug06G0364000
rosa_samantha	Rh2AG181700 Rh2BG191300 Rh2CG186000 Rh2DG187900 Rh6AG472700 Rh6BG483900 Rh6CG488800 Rh6DG475100
rosa_wichuraiana	Rw2G014230 Rw6G041250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	433
Acc36I	ACCTGC	1 cut(s)	433
AccII	CGCG	1 cut(s)	128
AciI	CCGC	5 cut(s)	87, 126, 128, 221, 263
AclWI	GGATC	4 cut(s)	290, 341, 346, 359
AfaI	GTAC	1 cut(s)	160
AfiI	CCNNNNNNNGG	1 cut(s)	511
AgsI	TTSAA	1 cut(s)	436
AluBI	AGCT	3 cut(s)	183, 466, 472
AluI	AGCT	3 cut(s)	183, 466, 472
Alw21I	GWGCWC	1 cut(s)	145
Alw26I	GTCTC	1 cut(s)	79
Alw44I	GTGCAC	1 cut(s)	141
AlwI	GGATC	4 cut(s)	290, 341, 346, 359
AoxI	GGCC	2 cut(s)	123, 502
ApaLI	GTGCAC	1 cut(s)	141
ApeKI	GCWGC	5 cut(s)	131, 134, 191, 229, 311
AspS9I	GGNCC	1 cut(s)	502
AsuC2I	CCSGG	2 cut(s)	156, 372
AsuII	TTCGAA	1 cut(s)	290
BaeGI	GKGCMC	1 cut(s)	145
BamHI	GGATCC	1 cut(s)	351
Bbv12I	GWGCWC	1 cut(s)	145
BbvI	GCAGC	5 cut(s)	118, 121, 178, 241, 323
BceAI	ACGGC	1 cut(s)	408
BcnI	CCSGG	2 cut(s)	156, 372
BcoDI	GTCTC	1 cut(s)	79
BfaI	CTAG	1 cut(s)	404
BfmI	CTRYAG	1 cut(s)	356
BfuAI	ACCTGC	1 cut(s)	433
BisI	GCNGC	9 cut(s)	126, 129, 132, 135, 192, 222, 230, 263, 312
BlsI	GCNGC	9 cut(s)	127, 130, 133, 136, 193, 223, 231, 264, 313
Bme1390I	CCNGG	2 cut(s)	156, 372
BmgT120I	GGNCC	1 cut(s)	502
BmiI	GGNNCC	2 cut(s)	353, 503
BmrFI	CCNGG	2 cut(s)	156, 372
BmsI	GCATC	1 cut(s)	390
BpmI	CTGGAG	1 cut(s)	488
Bpu10I	CCTNAGC	1 cut(s)	83
Bpu14I	TTCGAA	1 cut(s)	290
BpuMI	CCSGG	2 cut(s)	156, 372
BsaBI	GATNNNNATC	1 cut(s)	350
BsaI	GGTCTC	1 cut(s)	79
BsaJI	CCNNGG	3 cut(s)	69, 126, 154
Bsc4I	CCNNNNNNNGG	1 cut(s)	511
Bse1I	ACTGG	1 cut(s)	481
Bse3DI	GCAATG	3 cut(s)	41, 201, 231
Bse8I	GATNNNNATC	1 cut(s)	350
BseDI	CCNNGG	3 cut(s)	69, 126, 154
BseGI	GGATG	2 cut(s)	20, 62
BseJI	GATNNNNATC	1 cut(s)	350
BseLI	CCNNNNNNNGG	1 cut(s)	511
BseMI	GCAATG	3 cut(s)	41, 201, 231
BseMII	CTCAG	1 cut(s)	520
BseNI	ACTGG	1 cut(s)	481
BseRI	GAGGAG	2 cut(s)	58, 286
BseSI	GKGCMC	1 cut(s)	145
BseXI	GCAGC	5 cut(s)	118, 121, 178, 241, 323
BsgI	GTGCAG	1 cut(s)	469
Bsh1236I	CGCG	1 cut(s)	128
BshFI	GGCC	2 cut(s)	125, 504
BsiHKAI	GWGCWC	1 cut(s)	145
BsiSI	CCGG	2 cut(s)	156, 371
BslFI	GGGAC	1 cut(s)	391
BslI	CCNNNNNNNGG	1 cut(s)	511
BsmAI	GTCTC	1 cut(s)	79
BsmFI	GGGAC	1 cut(s)	391
BsnI	GGCC	2 cut(s)	125, 504
Bso31I	GGTCTC	1 cut(s)	79
Bsp119I	TTCGAA	1 cut(s)	290
Bsp1286I	GDGCHC	1 cut(s)	145
Bsp143I	GATC	4 cut(s)	207, 295, 333, 351
BspACI	CCGC	5 cut(s)	87, 126, 128, 221, 263
BspANI	GGCC	2 cut(s)	125, 504
BspCNI	CTCAG	1 cut(s)	519
BspFNI	CGCG	1 cut(s)	128
BspLI	GGNNCC	2 cut(s)	353, 503
BspMAI	CTGCAG	1 cut(s)	360
BspMI	ACCTGC	1 cut(s)	433
BspPI	GGATC	4 cut(s)	290, 341, 346, 359
BspT104I	TTCGAA	1 cut(s)	290
BspTNI	GGTCTC	1 cut(s)	79
BsrDI	GCAATG	3 cut(s)	41, 201, 231
BsrI	ACTGG	1 cut(s)	481
BssECI	CCNNGG	3 cut(s)	69, 126, 154
BssMI	GATC	4 cut(s)	207, 295, 333, 351
Bst4CI	ACNGT	1 cut(s)	147
Bst6I	CTCTTC	1 cut(s)	263
BstBI	TTCGAA	1 cut(s)	290
BstDEI	CTNAG	2 cut(s)	83, 506
BstDSI	CCRYGG	1 cut(s)	126
BstF5I	GGATG	2 cut(s)	20, 62
BstFNI	CGCG	1 cut(s)	128
BstKTI	GATC	4 cut(s)	210, 298, 336, 354
BstMAI	GTCTC	1 cut(s)	79
BstMBI	GATC	4 cut(s)	207, 295, 333, 351
BstMWI	GCNNNNNNNGC	4 cut(s)	43, 131, 134, 140
BstSCI	CCNGG	2 cut(s)	154, 370
BstSFI	CTRYAG	1 cut(s)	356
BstSLI	GKGCMC	1 cut(s)	145
BstUI	CGCG	1 cut(s)	128
BstV1I	GCAGC	5 cut(s)	118, 121, 178, 241, 323
BstX2I	RGATCY	2 cut(s)	295, 351
BstYI	RGATCY	2 cut(s)	295, 351
BsuRI	GGCC	2 cut(s)	125, 504
BtgI	CCRYGG	1 cut(s)	126
BtsCI	GGATG	2 cut(s)	20, 62
BtsI	GCAGTG	1 cut(s)	261
BtsIMutI	CAGTG	2 cut(s)	143, 261
BveI	ACCTGC	1 cut(s)	433
Cfr13I	GGNCC	1 cut(s)	502
Cfr42I	CCGCGG	1 cut(s)	129
Csp6I	GTAC	1 cut(s)	159
CviAII	CATG	1 cut(s)	498
CviQI	GTAC	1 cut(s)	159
DdeI	CTNAG	2 cut(s)	83, 506
DpnI	GATC	4 cut(s)	209, 297, 335, 353
DpnII	GATC	4 cut(s)	207, 295, 333, 351
Eam1104I	CTCTTC	1 cut(s)	263
EarI	CTCTTC	1 cut(s)	263
Eco31I	GGTCTC	1 cut(s)	79
EcoO109I	RGGNCCY	1 cut(s)	502
FaeI	CATG	1 cut(s)	501
FaiI	YATR	7 cut(s)	9, 169, 171, 321, 416, 423, 499
FaqI	GGGAC	1 cut(s)	391
FatI	CATG	1 cut(s)	497
FauNDI	CATATG	1 cut(s)	169
Fnu4HI	GCNGC	9 cut(s)	126, 129, 132, 135, 192, 222, 230, 263, 312
FokI	GGATG	2 cut(s)	7, 49
Fsp4HI	GCNGC	9 cut(s)	126, 129, 132, 135, 192, 222, 230, 263, 312
FspBI	CTAG	1 cut(s)	404
GluI	GCNGC	9 cut(s)	126, 129, 132, 135, 192, 222, 230, 263, 312
GsuI	CTGGAG	1 cut(s)	488
HaeIII	GGCC	2 cut(s)	125, 504
HapII	CCGG	2 cut(s)	156, 371
Hin1II	CATG	1 cut(s)	501
HinfI	GANTC	1 cut(s)	235
HpaII	CCGG	2 cut(s)	156, 371
Hpy166II	GTNNAC	1 cut(s)	143
Hpy188I	TCNGA	1 cut(s)	240
Hpy188III	TCNNGA	1 cut(s)	433
Hpy8I	GTNNAC	1 cut(s)	143
HpyAV	CCTTC	1 cut(s)	69
HpyCH4III	ACNGT	1 cut(s)	147
HpyCH4V	TGCA	5 cut(s)	143, 194, 229, 358, 450
HpyF10VI	GCNNNNNNNGC	4 cut(s)	43, 131, 134, 140
HpyF3I	CTNAG	2 cut(s)	83, 506
Hsp92II	CATG	1 cut(s)	501
KspI	CCGCGG	1 cut(s)	129
Kzo9I	GATC	4 cut(s)	207, 295, 333, 351
LmnI	GCTCC	1 cut(s)	469
LpnPI	CCDG	8 cut(s)	107, 123, 169, 368, 384, 428, 452, 494
Lsp1109I	GCAGC	5 cut(s)	118, 121, 178, 241, 323
LweI	GCATC	1 cut(s)	390
MaeI	CTAG	1 cut(s)	404
MalI	GATC	4 cut(s)	209, 297, 335, 353
MboI	GATC	4 cut(s)	207, 295, 333, 351
MboII	GAAGA	3 cut(s)	280, 295, 448
MflI	RGATCY	2 cut(s)	295, 351
MhlI	GDGCHC	1 cut(s)	145
MluCI	AATT	1 cut(s)	163
MspA1I	CMGCKG	1 cut(s)	128
MspI	CCGG	2 cut(s)	156, 371
MspR9I	CCNGG	2 cut(s)	156, 372
MvnI	CGCG	1 cut(s)	128
MwoI	GCNNNNNNNGC	4 cut(s)	43, 131, 134, 140
NciI	CCSGG	2 cut(s)	156, 372
NdeI	CATATG	1 cut(s)	169
NdeII	GATC	4 cut(s)	207, 295, 333, 351
NlaIII	CATG	1 cut(s)	501
NlaIV	GGNNCC	2 cut(s)	353, 503
NspV	TTCGAA	1 cut(s)	290
PaqCI	CACCTGC	1 cut(s)	433
PfeI	GAWTC	1 cut(s)	235
PkrI	GCNGC	9 cut(s)	127, 130, 133, 136, 193, 223, 231, 264, 313
PspN4I	GGNNCC	2 cut(s)	353, 503
PspPI	GGNCC	1 cut(s)	502
PstI	CTGCAG	1 cut(s)	360
PsuI	RGATCY	2 cut(s)	295, 351
RsaI	GTAC	1 cut(s)	160
RsaNI	GTAC	1 cut(s)	159
SacII	CCGCGG	1 cut(s)	129
SatI	GCNGC	9 cut(s)	126, 129, 132, 135, 192, 222, 230, 263, 312
Sau3AI	GATC	4 cut(s)	207, 295, 333, 351
Sau96I	GGNCC	1 cut(s)	502
ScrFI	CCNGG	2 cut(s)	156, 372
SduI	GDGCHC	1 cut(s)	145
SetI	ASST	4 cut(s)	185, 447, 468, 474
SfaNI	GCATC	1 cut(s)	390
SfcI	CTRYAG	1 cut(s)	356
Sfr303I	CCGCGG	1 cut(s)	129
SfuI	TTCGAA	1 cut(s)	290
SgrBI	CCGCGG	1 cut(s)	129
Sse9I	AATT	1 cut(s)	163
SsiI	CCGC	5 cut(s)	87, 126, 128, 221, 263
SspMI	CTAG	1 cut(s)	404
StyD4I	CCNGG	2 cut(s)	154, 370
TaaI	ACNGT	1 cut(s)	147
TaqI	TCGA	2 cut(s)	290, 398
TaqII	GACCGA	1 cut(s)	61
TasI	AATT	1 cut(s)	163
TauI	GCSGC	4 cut(s)	128, 131, 224, 265
TfiI	GAWTC	1 cut(s)	235
TscAI	CASTG	2 cut(s)	150, 261
TseI	GCWGC	5 cut(s)	131, 134, 191, 229, 311
TspDTI	ATGAA	5 cut(s)	9, 51, 156, 186, 486
TspRI	CASTG	2 cut(s)	150, 261
VneI	GTGCAC	1 cut(s)	141
XspI	CTAG	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.