RchiOBHm_Chr6g0308101

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0004140
Physical Location & Seq
Reverse (-)
66213869 .. 66214825
957 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27701

Sequence Viewer

Length: 750 bp
ATGGATATTAACCAACTAAAATCAGAGGAGCAGATGGAAATGATGATGATGATGCAAATGGATAAAATCTCCGAGCTCTGCGGCGCCTACAACGACGTCGTTTCCGACCTCCCTTCCTCTGAACACTTTCCTGGTAGTGCAACTTCCATGCCACAATACTGTCATGACCAAAACCCTCACAATGTTTCTTCACCTCCGCCCTCATTTCTTAACCTAAGCCCATCAACCATATCATTCACCAACTCACTTGAACAATCACCACAACCTCAACTGGCTTCCGATAAGCGTGCTTCAATGGCGGCGATGAGGGAGATGATATTCAGAATCGCCTCGATGCAGCCAATCCACATAGACCCGGAGTCGGTGAAGCCGCCGAAGAGAAGGAACGTGAAGATTTCCAAGGACCCTCAGAGCGTGGCGGCGCGTCACAGGAGGGAGAGGATTAGCGAGAGGATTAGAATACTCCAGAGACTAGTCCCCGGCGGGACTAAAATGGACACTGCGTCCATGCTGGACGAGGCTATCCACTACGTCAAGTTTTTGAAGTCTCAAGTTCAGACGCTGGAGAGAGCCGCCGTGAATAATAATAATAATAATAATAATAATAATAATAGGGTACCGCAAACCGGGATTGGTTTTCCTGTGGCCATGTCAAGTGGGAGTAATTACCTTTCTAATTCTATGGCCAAAGCGTACCAAGCTCATCCTCCGCAGCATCATCAGAATGTGCGGCATTTTGAAGATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

249

Amino Acids

28.03

Weight (kDa)

8.54

Isoelectric Point (pI)

61.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 141 - 182 3.4e-07 Helix-loop-helix DNA-binding domain
bHLH_SAC51 PF23173 143 - 196 9.7e-13 Transcription factor SAC51 bHLH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 99
Acc65I GGTACC 1 cut(s) 616
AccB1I GGYRCC 2 cut(s) 83, 616
AccII CGCG 1 cut(s) 424
AcoI YGGCCR 2 cut(s) 645, 684
AcyI GRCGYC 2 cut(s) 84, 96
AfaI GTAC 2 cut(s) 618, 695
AfiI CCNNNNNNNGG 2 cut(s) 361, 626
AgsI TTSAA 4 cut(s) 251, 294, 544, 740
AhdI GACNNNNNGTC 2 cut(s) 358, 502
AhlI ACTAGT 1 cut(s) 472
AjnI CCWGG 1 cut(s) 130
AluBI AGCT 2 cut(s) 76, 701
AluI AGCT 2 cut(s) 76, 701
Alw21I GWGCWC 1 cut(s) 78
Alw26I GTCTC 2 cut(s) 463, 552
AlwNI CAGNNNCTG 1 cut(s) 562
AoxI GGCC 2 cut(s) 645, 684
ApeKI GCWGC 2 cut(s) 337, 712
Asp700I GAANNNNTTC 1 cut(s) 126
Asp718I GGTACC 1 cut(s) 616
AspLEI GCGC 2 cut(s) 86, 424
AspS9I GGNCC 1 cut(s) 403
AsuC2I CCSGG 3 cut(s) 356, 480, 628
AsuHPI GGTGA 4 cut(s) 183, 229, 249, 376
AvaII GGWCC 1 cut(s) 403
BalI TGGCCA 2 cut(s) 647, 686
BanI GGYRCC 2 cut(s) 83, 616
BanII GRGCYC 1 cut(s) 78
BarI GAAGNNNNNNTAC 2 cut(s) 127, 159
Bbv12I GWGCWC 1 cut(s) 78
BbvI GCAGC 2 cut(s) 349, 724
BccI CCATC 2 cut(s) 28, 229
BceAI ACGGC 1 cut(s) 560
BcgI CGANNNNNNTGC 2 cut(s) 269, 303
BciT130I CCWGG 1 cut(s) 132
BcnI CCSGG 3 cut(s) 356, 480, 628
BcoDI GTCTC 2 cut(s) 463, 552
BcuI ACTAGT 1 cut(s) 472
BfaI CTAG 1 cut(s) 473
BfoI RGCGCY 1 cut(s) 87
BisI GCNGC 8 cut(s) 82, 300, 338, 371, 420, 573, 713, 731
BlsI GCNGC 8 cut(s) 83, 301, 339, 372, 421, 574, 714, 732
Bme1390I CCNGG 4 cut(s) 132, 356, 480, 628
Bme18I GGWCC 1 cut(s) 403
BmeRI GACNNNNNGTC 2 cut(s) 358, 502
BmgT120I GGNCC 1 cut(s) 403
BmiI GGNNCC 3 cut(s) 85, 405, 618
BmrFI CCNGG 4 cut(s) 132, 356, 480, 628
BmsI GCATC 4 cut(s) 42, 324, 724, 733
BpmI CTGGAG 2 cut(s) 449, 584
Bpu10I CCTNAGC 1 cut(s) 215
BpuEI CTTGAG 1 cut(s) 534
BpuMI CCSGG 3 cut(s) 356, 480, 628
BsaHI GRCGYC 2 cut(s) 84, 96
BsaJI CCNNGG 2 cut(s) 399, 478
Bsc4I CCNNNNNNNGG 2 cut(s) 361, 626
Bse1I ACTGG 1 cut(s) 276
BseBI CCWGG 1 cut(s) 132
BseDI CCNNGG 2 cut(s) 399, 478
BseGI GGATG 1 cut(s) 703
BseLI CCNNNNNNNGG 2 cut(s) 361, 626
BseMII CTCAG 1 cut(s) 422
BseNI ACTGG 1 cut(s) 276
BseRI GAGGAG 1 cut(s) 41
BseXI GCAGC 2 cut(s) 349, 724
Bsh1236I CGCG 1 cut(s) 424
BshFI GGCC 2 cut(s) 647, 686
BshNI GGYRCC 2 cut(s) 83, 616
BsiHKAI GWGCWC 1 cut(s) 78
BsiSI CCGG 3 cut(s) 356, 480, 627
BslFI GGGAC 2 cut(s) 461, 499
BslI CCNNNNNNNGG 2 cut(s) 361, 626
BsmAI GTCTC 2 cut(s) 463, 552
BsmFI GGGAC 2 cut(s) 461, 499
BsnI GGCC 2 cut(s) 647, 686
Bsp1286I GDGCHC 1 cut(s) 78
BspANI GGCC 2 cut(s) 647, 686
BspCNI CTCAG 1 cut(s) 421
BspFNI CGCG 1 cut(s) 424
BspHI TCATGA 1 cut(s) 163
BspLI GGNNCC 3 cut(s) 85, 405, 618
BspT107I GGYRCC 2 cut(s) 83, 616
BsrI ACTGG 1 cut(s) 276
BssECI CCNNGG 2 cut(s) 399, 478
BssNI GRCGYC 2 cut(s) 84, 96
BssT1I CCWWGG 1 cut(s) 399
Bst2UI CCWGG 1 cut(s) 132
Bst4CI ACNGT 1 cut(s) 161
Bst6I CTCTTC 1 cut(s) 371
BstACI GRCGYC 2 cut(s) 84, 96
BstC8I GCNNGC 1 cut(s) 288
BstDEI CTNAG 2 cut(s) 215, 408
BstF5I GGATG 1 cut(s) 703
BstFNI CGCG 1 cut(s) 424
BstH2I RGCGCY 1 cut(s) 87
BstHHI GCGC 2 cut(s) 86, 424
BstMAI GTCTC 2 cut(s) 463, 552
BstMWI GCNNNNNNNGC 2 cut(s) 296, 698
BstNI CCWGG 1 cut(s) 132
BstSCI CCNGG 4 cut(s) 130, 354, 478, 626
BstUI CGCG 1 cut(s) 424
BstV1I GCAGC 2 cut(s) 349, 724
BsuRI GGCC 2 cut(s) 647, 686
BtgZI GCGATG 1 cut(s) 317
BtsCI GGATG 1 cut(s) 703
BtsI GCAGTG 1 cut(s) 498
BtsIMutI CAGTG 1 cut(s) 498
Cac8I GCNNGC 1 cut(s) 288
CaiI CAGNNNCTG 1 cut(s) 562
CciI TCATGA 1 cut(s) 163
CfoI GCGC 2 cut(s) 86, 424
Cfr13I GGNCC 1 cut(s) 403
CseI GACGC 3 cut(s) 413, 492, 568
Csp6I GTAC 2 cut(s) 617, 694
CviAII CATG 4 cut(s) 148, 164, 508, 649
CviQI GTAC 2 cut(s) 617, 694
DdeI CTNAG 2 cut(s) 215, 408
DinI GGCGCC 1 cut(s) 85
DriI GACNNNNNGTC 2 cut(s) 358, 502
EaeI YGGCCR 2 cut(s) 645, 684
Eam1104I CTCTTC 1 cut(s) 371
Eam1105I GACNNNNNGTC 2 cut(s) 358, 502
EarI CTCTTC 1 cut(s) 371
EciI GGCGGA 1 cut(s) 186
Ecl136II GAGCTC 1 cut(s) 76
Eco130I CCWWGG 1 cut(s) 399
Eco24I GRGCYC 1 cut(s) 78
Eco47I GGWCC 1 cut(s) 403
Eco53kI GAGCTC 1 cut(s) 76
EcoICRI GAGCTC 1 cut(s) 76
EcoO109I RGGNCCY 1 cut(s) 403
EcoRII CCWGG 1 cut(s) 130
EcoT14I CCWWGG 1 cut(s) 399
EcoT38I GRGCYC 1 cut(s) 78
EgeI GGCGCC 1 cut(s) 85
EheI GGCGCC 1 cut(s) 85
ErhI CCWWGG 1 cut(s) 399
FaeI CATG 4 cut(s) 151, 167, 511, 652
FaiI YATR 7 cut(s) 149, 165, 230, 350, 509, 650, 683
FaqI GGGAC 2 cut(s) 461, 499
FatI CATG 4 cut(s) 147, 163, 507, 648
FauI CCCGC 1 cut(s) 476
Fnu4HI GCNGC 8 cut(s) 82, 300, 338, 371, 420, 573, 713, 731
FokI GGATG 1 cut(s) 690
FriOI GRGCYC 1 cut(s) 78
Fsp4HI GCNGC 8 cut(s) 82, 300, 338, 371, 420, 573, 713, 731
FspBI CTAG 1 cut(s) 473
GlaI GCGC 2 cut(s) 85, 423
GluI GCNGC 8 cut(s) 82, 300, 338, 371, 420, 573, 713, 731
GsuI CTGGAG 2 cut(s) 449, 584
HaeII RGCGCY 1 cut(s) 87
HaeIII GGCC 2 cut(s) 647, 686
HapII CCGG 3 cut(s) 356, 480, 627
HgaI GACGC 3 cut(s) 413, 492, 568
HhaI GCGC 2 cut(s) 86, 424
Hin1I GRCGYC 2 cut(s) 84, 96
Hin1II CATG 4 cut(s) 151, 167, 511, 652
Hin6I GCGC 2 cut(s) 84, 422
HinP1I GCGC 2 cut(s) 84, 422
HinfI GANTC 2 cut(s) 324, 359
HpaII CCGG 3 cut(s) 356, 480, 627
HphI GGTGA 4 cut(s) 183, 229, 249, 376
Hpy188I TCNGA 9 cut(s) 25, 73, 106, 121, 280, 323, 411, 558, 723
Hpy188III TCNNGA 2 cut(s) 164, 466
Hpy99I CGWCG 2 cut(s) 98, 101
HpyAV CCTTC 2 cut(s) 123, 375
HpyCH4III ACNGT 1 cut(s) 161
HpyCH4IV ACGT 3 cut(s) 96, 387, 531
HpyCH4V TGCA 3 cut(s) 55, 140, 337
HpyF10VI GCNNNNNNNGC 2 cut(s) 296, 698
HpyF3I CTNAG 2 cut(s) 215, 408
HpySE526I ACGT 3 cut(s) 96, 387, 531
Hsp92I GRCGYC 2 cut(s) 84, 96
Hsp92II CATG 4 cut(s) 151, 167, 511, 652
HspAI GCGC 2 cut(s) 84, 422
KasI GGCGCC 1 cut(s) 83
KpnI GGTACC 1 cut(s) 620
LmnI GCTCC 1 cut(s) 28
Lsp1109I GCAGC 2 cut(s) 349, 724
LweI GCATC 4 cut(s) 42, 324, 724, 733
MaeI CTAG 1 cut(s) 473
MaeII ACGT 3 cut(s) 96, 387, 531
MaeIII GTNAC 1 cut(s) 425
MboII GAAGA 3 cut(s) 180, 388, 403
MhlI GDGCHC 1 cut(s) 78
MlsI TGGCCA 2 cut(s) 647, 686
MluCI AATT 2 cut(s) 664, 676
MluNI TGGCCA 2 cut(s) 647, 686
Mly113I GGCGCC 1 cut(s) 84
MlyI GAGTC 1 cut(s) 368
MmeI TCCRAC 1 cut(s) 129
Mox20I TGGCCA 2 cut(s) 647, 686
MroXI GAANNNNTTC 1 cut(s) 126
MscI TGGCCA 2 cut(s) 647, 686
MseI TTAA 2 cut(s) 9, 210
MslI CAYNNNNRTG 1 cut(s) 723
Msp20I TGGCCA 2 cut(s) 647, 686
MspI CCGG 3 cut(s) 356, 480, 627
MspR9I CCNGG 4 cut(s) 132, 356, 480, 628
MvaI CCWGG 1 cut(s) 132
MvnI CGCG 1 cut(s) 424
MwoI GCNNNNNNNGC 2 cut(s) 296, 698
NarI GGCGCC 1 cut(s) 84
NciI CCSGG 3 cut(s) 356, 480, 628
NlaIII CATG 4 cut(s) 151, 167, 511, 652
NlaIV GGNNCC 3 cut(s) 85, 405, 618
NmuCI GTSAC 1 cut(s) 425
PagI TCATGA 1 cut(s) 163
PcsI WCGNNNNNNNCGW 1 cut(s) 102
PdmI GAANNNNTTC 1 cut(s) 126
PfeI GAWTC 1 cut(s) 324
PkrI GCNGC 8 cut(s) 83, 301, 339, 372, 421, 574, 714, 732
PleI GAGTC 1 cut(s) 367
PluTI GGCGCC 1 cut(s) 87
PpsI GAGTC 1 cut(s) 367
PpuMI RGGWCCY 1 cut(s) 403
Psp124BI GAGCTC 1 cut(s) 78
Psp5II RGGWCCY 1 cut(s) 403
Psp6I CCWGG 1 cut(s) 130
PspGI CCWGG 1 cut(s) 130
PspN4I GGNNCC 3 cut(s) 85, 405, 618
PspPI GGNCC 1 cut(s) 403
PspPPI RGGWCCY 1 cut(s) 403
PstNI CAGNNNCTG 1 cut(s) 562
RsaI GTAC 2 cut(s) 618, 695
RsaNI GTAC 2 cut(s) 617, 694
RseI CAYNNNNRTG 1 cut(s) 723
SacI GAGCTC 1 cut(s) 78
SaqAI TTAA 2 cut(s) 9, 210
SatI GCNGC 8 cut(s) 82, 300, 338, 371, 420, 573, 713, 731
Sau96I GGNCC 1 cut(s) 403
SchI GAGTC 1 cut(s) 368
ScrFI CCNGG 4 cut(s) 132, 356, 480, 628
SduI GDGCHC 1 cut(s) 78
SfaNI GCATC 4 cut(s) 42, 324, 724, 733
SfoI GGCGCC 1 cut(s) 85
SinI GGWCC 1 cut(s) 403
SmiMI CAYNNNNRTG 1 cut(s) 723
SmlI CTYRAG 1 cut(s) 549
SmoI CTYRAG 1 cut(s) 549
SpeI ACTAGT 1 cut(s) 472
Sse9I AATT 2 cut(s) 664, 676
SspDI GGCGCC 1 cut(s) 83
SspMI CTAG 1 cut(s) 473
SstI GAGCTC 1 cut(s) 78
StyD4I CCNGG 4 cut(s) 130, 354, 478, 626
StyI CCWWGG 1 cut(s) 399
TaaI ACNGT 1 cut(s) 161
TaiI ACGT 3 cut(s) 99, 390, 534
TaqI TCGA 1 cut(s) 332
TasI AATT 2 cut(s) 664, 676
TauI GCSGC 6 cut(s) 84, 302, 373, 422, 575, 733
TfiI GAWTC 1 cut(s) 324
Tru1I TTAA 2 cut(s) 9, 210
Tru9I TTAA 2 cut(s) 9, 210
TscAI CASTG 1 cut(s) 505
TseFI GTSAC 1 cut(s) 425
TseI GCWGC 2 cut(s) 337, 712
Tsp45I GTSAC 1 cut(s) 425
TspRI CASTG 1 cut(s) 505
VpaK11BI GGWCC 1 cut(s) 403
XmnI GAANNNNTTC 1 cut(s) 126
XspI CTAG 1 cut(s) 473
ZraI GACGTC 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.