Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005706.1

Orthogroup ID

OG0004140

Physical Location & Seq

Genomic Coordinates Reverse (-)

3357 .. 3944

Gene Structure 588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005706.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

atgatgatgatgatgcaaatggataaaatctccgagctctgcggcgcctacaacgacgtcgtttccgacctcccttcctctgaacactttcctggtagtgcaacttccatgccacaatactgtcatgaccaaaacaatgtttcttcacctccgccctcatttcttaacctaagcccatcaaccatatcattcaccaactcacttgaacaatcaccacaacctcaactggcttccgataagcgtgcttcaatggcggcgatgagggagatgatattcagaatcgcctcgatgcagccaatccacatagacccggagtcggtgaagccaccgaagagaaggaacgtgaagatttccaaggaccctcagagcgtggcggcgcgtcacaggagggagaggattagcgagaggattagaatactccagagactagtccctggcgggactaaaatggacactgcgtccatgctggacgaggctatccactacgtcaagtttttgaagtctcaagttcagacgctggagagagccgccgtgaattggacactgcgtccatgctggacgaggctatccactacgtcaagtttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

195

Amino Acids

22.05

Weight (kDa)

9.47

Isoelectric Point (pI)

63.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004140)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50330 AT5G67060 AT5G67060
fragaria_vesca	FvH4_1g16130 FvH4_2g34280
malus_domestica	MD02G1173400.v1.1 MD08G1098800.v1.1 MD15G1081100.v1.1 MD15G1284900.v1.1
prunus_persica	Prupe.1G434000_v2.0.a1 Prupe.7G132300_v2.0.a1
pyrus_communis	pycom15g07560 pycom15g07580
rosa_chinensis	RchiOBHm_Chr2g0105811 RchiOBHm_Chr6g0308101
rosa_laevigata	RLG00000010668 RLG00000017461
rosa_multiflora	Rmu_sc0005706.1_g000001 Rmu_sc0010497.1_g000002
rosa_roxburghii	Rroxscaffold_2G00137880 Rroxscaffold_7G00160540
rosa_rugosa	Rorug02G0130500 Rorug06G0364000
rosa_samantha	Rh2AG181700 Rh2BG191300 Rh2CG186000 Rh2DG187900 Rh6AG472700 Rh6BG483900 Rh6CG488800 Rh6DG475100
rosa_wichuraiana	Rw2G014230 Rw6G041250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	60
AccB1I	GGYRCC	1 cut(s)	44
AccII	CGCG	1 cut(s)	379
AciI	CCGC	6 cut(s)	42, 152, 254, 374, 438, 528
AcyI	GRCGYC	2 cut(s)	45, 57
AfiI	CCNNNNNNNGG	2 cut(s)	316, 537
AgsI	TTSAA	3 cut(s)	206, 249, 499
AhdI	GACNNNNNGTC	3 cut(s)	313, 457, 546
AhlI	ACTAGT	1 cut(s)	427
AjnI	CCWGG	2 cut(s)	91, 433
AluBI	AGCT	1 cut(s)	37
AluI	AGCT	1 cut(s)	37
Alw21I	GWGCWC	1 cut(s)	39
Alw26I	GTCTC	2 cut(s)	418, 507
AlwNI	CAGNNNCTG	1 cut(s)	517
ApeKI	GCWGC	1 cut(s)	292
Asp700I	GAANNNNTTC	1 cut(s)	87
AspLEI	GCGC	2 cut(s)	47, 379
AspS9I	GGNCC	1 cut(s)	358
AsuC2I	CCSGG	1 cut(s)	311
AsuHPI	GGTGA	4 cut(s)	138, 184, 204, 331
AvaII	GGWCC	1 cut(s)	358
BanI	GGYRCC	1 cut(s)	44
BanII	GRGCYC	1 cut(s)	39
BarI	GAAGNNNNNNTAC	2 cut(s)	88, 120
Bbv12I	GWGCWC	1 cut(s)	39
BbvI	GCAGC	1 cut(s)	304
BccI	CCATC	1 cut(s)	184
BceAI	ACGGC	1 cut(s)	515
BcgI	CGANNNNNNTGC	2 cut(s)	224, 258
BciT130I	CCWGG	2 cut(s)	93, 435
BcnI	CCSGG	1 cut(s)	311
BcoDI	GTCTC	2 cut(s)	418, 507
BcuI	ACTAGT	1 cut(s)	427
BfaI	CTAG	1 cut(s)	428
BfoI	RGCGCY	1 cut(s)	48
BisI	GCNGC	5 cut(s)	43, 255, 293, 375, 528
BlsI	GCNGC	5 cut(s)	44, 256, 294, 376, 529
Bme1390I	CCNGG	3 cut(s)	93, 311, 435
Bme18I	GGWCC	1 cut(s)	358
BmeRI	GACNNNNNGTC	3 cut(s)	313, 457, 546
BmgT120I	GGNCC	1 cut(s)	358
BmiI	GGNNCC	2 cut(s)	46, 360
BmrFI	CCNGG	3 cut(s)	93, 311, 435
BmsI	GCATC	2 cut(s)	3, 279
BpmI	CTGGAG	2 cut(s)	404, 539
Bpu10I	CCTNAGC	1 cut(s)	170
BpuEI	CTTGAG	1 cut(s)	489
BpuMI	CCSGG	1 cut(s)	311
BsaHI	GRCGYC	2 cut(s)	45, 57
BsaJI	CCNNGG	2 cut(s)	354, 433
Bsc4I	CCNNNNNNNGG	2 cut(s)	316, 537
Bse1I	ACTGG	1 cut(s)	231
BseBI	CCWGG	2 cut(s)	93, 435
BseDI	CCNNGG	2 cut(s)	354, 433
BseLI	CCNNNNNNNGG	2 cut(s)	316, 537
BseMII	CTCAG	1 cut(s)	377
BseNI	ACTGG	1 cut(s)	231
BseXI	GCAGC	1 cut(s)	304
Bsh1236I	CGCG	1 cut(s)	379
BshNI	GGYRCC	1 cut(s)	44
BsiHKAI	GWGCWC	1 cut(s)	39
BsiSI	CCGG	1 cut(s)	311
BslFI	GGGAC	2 cut(s)	416, 454
BslI	CCNNNNNNNGG	2 cut(s)	316, 537
BsmAI	GTCTC	2 cut(s)	418, 507
BsmFI	GGGAC	2 cut(s)	416, 454
Bsp1286I	GDGCHC	1 cut(s)	39
BspACI	CCGC	6 cut(s)	42, 152, 254, 374, 438, 528
BspCNI	CTCAG	1 cut(s)	376
BspFNI	CGCG	1 cut(s)	379
BspHI	TCATGA	1 cut(s)	124
BspLI	GGNNCC	2 cut(s)	46, 360
BspT107I	GGYRCC	1 cut(s)	44
BsrI	ACTGG	1 cut(s)	231
BssECI	CCNNGG	2 cut(s)	354, 433
BssNI	GRCGYC	2 cut(s)	45, 57
BssT1I	CCWWGG	1 cut(s)	354
Bst2UI	CCWGG	2 cut(s)	93, 435
Bst4CI	ACNGT	1 cut(s)	122
Bst6I	CTCTTC	1 cut(s)	326
BstACI	GRCGYC	2 cut(s)	45, 57
BstC8I	GCNNGC	1 cut(s)	243
BstDEI	CTNAG	2 cut(s)	170, 363
BstFNI	CGCG	1 cut(s)	379
BstH2I	RGCGCY	1 cut(s)	48
BstHHI	GCGC	2 cut(s)	47, 379
BstMAI	GTCTC	2 cut(s)	418, 507
BstMWI	GCNNNNNNNGC	1 cut(s)	251
BstNI	CCWGG	2 cut(s)	93, 435
BstSCI	CCNGG	3 cut(s)	91, 309, 433
BstUI	CGCG	1 cut(s)	379
BstV1I	GCAGC	1 cut(s)	304
BtgZI	GCGATG	1 cut(s)	272
BtsI	GCAGTG	2 cut(s)	453, 542
BtsIMutI	CAGTG	2 cut(s)	453, 542
Cac8I	GCNNGC	1 cut(s)	243
CaiI	CAGNNNCTG	1 cut(s)	517
CciI	TCATGA	1 cut(s)	124
CfoI	GCGC	2 cut(s)	47, 379
Cfr13I	GGNCC	1 cut(s)	358
CseI	GACGC	4 cut(s)	368, 447, 523, 536
CviAII	CATG	4 cut(s)	109, 125, 463, 552
CviJI	RGCY	8 cut(s)	37, 174, 230, 295, 325, 476, 527, 565
CviKI_1	RGCY	8 cut(s)	37, 174, 230, 295, 325, 476, 527, 565
DdeI	CTNAG	2 cut(s)	170, 363
DinI	GGCGCC	1 cut(s)	46
DriI	GACNNNNNGTC	3 cut(s)	313, 457, 546
Eam1104I	CTCTTC	1 cut(s)	326
Eam1105I	GACNNNNNGTC	3 cut(s)	313, 457, 546
EarI	CTCTTC	1 cut(s)	326
EciI	GGCGGA	1 cut(s)	141
Ecl136II	GAGCTC	1 cut(s)	37
Eco130I	CCWWGG	1 cut(s)	354
Eco24I	GRGCYC	1 cut(s)	39
Eco47I	GGWCC	1 cut(s)	358
Eco53kI	GAGCTC	1 cut(s)	37
EcoICRI	GAGCTC	1 cut(s)	37
EcoO109I	RGGNCCY	1 cut(s)	358
EcoRII	CCWGG	2 cut(s)	91, 433
EcoT14I	CCWWGG	1 cut(s)	354
EcoT38I	GRGCYC	1 cut(s)	39
EgeI	GGCGCC	1 cut(s)	46
EheI	GGCGCC	1 cut(s)	46
ErhI	CCWWGG	1 cut(s)	354
FaeI	CATG	4 cut(s)	112, 128, 466, 555
FaiI	YATR	6 cut(s)	110, 126, 185, 305, 464, 553
FaqI	GGGAC	2 cut(s)	416, 454
FatI	CATG	4 cut(s)	108, 124, 462, 551
FauI	CCCGC	1 cut(s)	431
Fnu4HI	GCNGC	5 cut(s)	43, 255, 293, 375, 528
FriOI	GRGCYC	1 cut(s)	39
Fsp4HI	GCNGC	5 cut(s)	43, 255, 293, 375, 528
FspBI	CTAG	1 cut(s)	428
GlaI	GCGC	2 cut(s)	46, 378
GluI	GCNGC	5 cut(s)	43, 255, 293, 375, 528
GsuI	CTGGAG	2 cut(s)	404, 539
HaeII	RGCGCY	1 cut(s)	48
HapII	CCGG	1 cut(s)	311
HgaI	GACGC	4 cut(s)	368, 447, 523, 536
HhaI	GCGC	2 cut(s)	47, 379
Hin1I	GRCGYC	2 cut(s)	45, 57
Hin1II	CATG	4 cut(s)	112, 128, 466, 555
Hin6I	GCGC	2 cut(s)	45, 377
HinP1I	GCGC	2 cut(s)	45, 377
HinfI	GANTC	2 cut(s)	279, 314
HpaII	CCGG	1 cut(s)	311
HphI	GGTGA	4 cut(s)	138, 184, 204, 331
Hpy188I	TCNGA	7 cut(s)	34, 67, 82, 235, 278, 366, 513
Hpy188III	TCNNGA	2 cut(s)	125, 421
Hpy99I	CGWCG	2 cut(s)	59, 62
HpyAV	CCTTC	2 cut(s)	84, 330
HpyCH4III	ACNGT	1 cut(s)	122
HpyCH4IV	ACGT	4 cut(s)	57, 342, 486, 575
HpyCH4V	TGCA	3 cut(s)	16, 101, 292
HpyF10VI	GCNNNNNNNGC	1 cut(s)	251
HpyF3I	CTNAG	2 cut(s)	170, 363
HpySE526I	ACGT	4 cut(s)	57, 342, 486, 575
Hsp92I	GRCGYC	2 cut(s)	45, 57
Hsp92II	CATG	4 cut(s)	112, 128, 466, 555
HspAI	GCGC	2 cut(s)	45, 377
KasI	GGCGCC	1 cut(s)	44
Lsp1109I	GCAGC	1 cut(s)	304
LweI	GCATC	2 cut(s)	3, 279
MaeI	CTAG	1 cut(s)	428
MaeII	ACGT	4 cut(s)	57, 342, 486, 575
MaeIII	GTNAC	1 cut(s)	380
MboII	GAAGA	3 cut(s)	135, 343, 358
MhlI	GDGCHC	1 cut(s)	39
MluCI	AATT	1 cut(s)	535
Mly113I	GGCGCC	1 cut(s)	45
MlyI	GAGTC	1 cut(s)	323
MmeI	TCCRAC	1 cut(s)	90
MroXI	GAANNNNTTC	1 cut(s)	87
MseI	TTAA	1 cut(s)	165
MspI	CCGG	1 cut(s)	311
MspR9I	CCNGG	3 cut(s)	93, 311, 435
MvaI	CCWGG	2 cut(s)	93, 435
MvnI	CGCG	1 cut(s)	379
MwoI	GCNNNNNNNGC	1 cut(s)	251
NarI	GGCGCC	1 cut(s)	45
NciI	CCSGG	1 cut(s)	311
NlaIII	CATG	4 cut(s)	112, 128, 466, 555
NlaIV	GGNNCC	2 cut(s)	46, 360
NmuCI	GTSAC	1 cut(s)	380
PagI	TCATGA	1 cut(s)	124
PcsI	WCGNNNNNNNCGW	1 cut(s)	63
PdmI	GAANNNNTTC	1 cut(s)	87
PfeI	GAWTC	1 cut(s)	279
PkrI	GCNGC	5 cut(s)	44, 256, 294, 376, 529
PleI	GAGTC	1 cut(s)	322
PluTI	GGCGCC	1 cut(s)	48
PpsI	GAGTC	1 cut(s)	322
PpuMI	RGGWCCY	1 cut(s)	358
Psp124BI	GAGCTC	1 cut(s)	39
Psp5II	RGGWCCY	1 cut(s)	358
Psp6I	CCWGG	2 cut(s)	91, 433
PspGI	CCWGG	2 cut(s)	91, 433
PspN4I	GGNNCC	2 cut(s)	46, 360
PspPI	GGNCC	1 cut(s)	358
PspPPI	RGGWCCY	1 cut(s)	358
PstNI	CAGNNNCTG	1 cut(s)	517
SacI	GAGCTC	1 cut(s)	39
SaqAI	TTAA	1 cut(s)	165
SatI	GCNGC	5 cut(s)	43, 255, 293, 375, 528
Sau96I	GGNCC	1 cut(s)	358
SchI	GAGTC	1 cut(s)	323
ScrFI	CCNGG	3 cut(s)	93, 311, 435
SduI	GDGCHC	1 cut(s)	39
SetI	ASST	9 cut(s)	39, 60, 72, 151, 171, 223, 345, 489, 578
SfaNI	GCATC	2 cut(s)	3, 279
SfoI	GGCGCC	1 cut(s)	46
SinI	GGWCC	1 cut(s)	358
SmlI	CTYRAG	1 cut(s)	504
SmoI	CTYRAG	1 cut(s)	504
SpeI	ACTAGT	1 cut(s)	427
Sse9I	AATT	1 cut(s)	535
SsiI	CCGC	6 cut(s)	42, 152, 254, 374, 438, 528
SspDI	GGCGCC	1 cut(s)	44
SspMI	CTAG	1 cut(s)	428
SstI	GAGCTC	1 cut(s)	39
StyD4I	CCNGG	3 cut(s)	91, 309, 433
StyI	CCWWGG	1 cut(s)	354
TaaI	ACNGT	1 cut(s)	122
TaiI	ACGT	4 cut(s)	60, 345, 489, 578
TaqI	TCGA	1 cut(s)	287
TasI	AATT	1 cut(s)	535
TauI	GCSGC	4 cut(s)	45, 257, 377, 530
TfiI	GAWTC	1 cut(s)	279
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TscAI	CASTG	2 cut(s)	460, 549
TseFI	GTSAC	1 cut(s)	380
TseI	GCWGC	1 cut(s)	292
Tsp45I	GTSAC	1 cut(s)	380
TspRI	CASTG	2 cut(s)	460, 549
VpaK11BI	GGWCC	1 cut(s)	358
XmnI	GAANNNNTTC	1 cut(s)	87
XspI	CTAG	1 cut(s)	428
ZraI	GACGTC	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.