Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0004140

Physical Location & Seq

Genomic Coordinates Reverse (-)

64092526 .. 64093821

Gene Structure 1296 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG475100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGATATTAACCAACTAAAATCAGAGGAGCAGATGGAAATGATGATGATGATGCAAATGGATAAAATCTCCGAGCTCTGCGGCGCCTACAACGACGTCGTTTCCGACCTCCCTTCCTCTGAACAATTTCCTGGTAGTGCAACTTCCATGCCACAATACTGTCATGACCAAAACCCTCACAATGTTTCTTCACCTCCGCCCTCATTTCTTAACCTAAGCCCATCAACCATATCATTCACCAACTCACTTGAACAATCACCACAACCTCAACTGGCTTCCGACAAGCGTGCTTCAATGGCGGCGATGAGGGAGATGATATTCAGAATCGCCTCGATGCAGCCGATCCACATAGACCCGGAGTCGGTGAAGCCGCCGAAGAGAAGGAACGTGAAGATTTCCAAGGACCCTCAGAGCGTGGCGGCGCGTCACAGGAGGGAGAGGATTAGCGAGAGGATTAGAATACTCCAGAGACTAGTCCCCGGCGGGACTAAAATGGACACTGCGTCCATGCTGGACGAGGCTATTCACTACGTCAAGTTTTTGAAGTCTCAAGTTCAGACGCTGGAGAGAGCCGCCGTGAATAATAATAATAATAATAATAATAATAATAATAATAATAGGGTACCGCAAACCGGGATTGGTTTTCCTGTGGCCATGTCAAGTGGGAGTAATTACCTTTCTAATTCTATGGCCAAAGCGTACCAAGCTCATCCTCCGCAGCATCATCAGAATGTGCAGCATTTTGGAGATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

251

Amino Acids

28.19

Weight (kDa)

7.85

Isoelectric Point (pI)

60.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	141 - 182	3.5e-07	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	143 - 196	9.8e-13	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004140)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50330 AT5G67060 AT5G67060
fragaria_vesca	FvH4_1g16130 FvH4_2g34280
malus_domestica	MD02G1173400.v1.1 MD08G1098800.v1.1 MD15G1081100.v1.1 MD15G1284900.v1.1
prunus_persica	Prupe.1G434000_v2.0.a1 Prupe.7G132300_v2.0.a1
pyrus_communis	pycom15g07560 pycom15g07580
rosa_chinensis	RchiOBHm_Chr2g0105811 RchiOBHm_Chr6g0308101
rosa_laevigata	RLG00000010668 RLG00000017461
rosa_multiflora	Rmu_sc0005706.1_g000001 Rmu_sc0010497.1_g000002
rosa_roxburghii	Rroxscaffold_2G00137880 Rroxscaffold_7G00160540
rosa_rugosa	Rorug02G0130500 Rorug06G0364000
rosa_samantha	Rh2AG181700 Rh2BG191300 Rh2CG186000 Rh2DG187900 Rh6AG472700 Rh6BG483900 Rh6CG488800 Rh6DG475100
rosa_wichuraiana	Rw2G014230 Rw6G041250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	99
Acc65I	GGTACC	1 cut(s)	622
AccB1I	GGYRCC	2 cut(s)	83, 622
AccII	CGCG	1 cut(s)	424
AciI	CCGC	9 cut(s)	81, 197, 299, 371, 419, 483, 573, 626, 716
AclWI	GGATC	1 cut(s)	337
AcoI	YGGCCR	2 cut(s)	651, 690
AcyI	GRCGYC	2 cut(s)	84, 96
AfaI	GTAC	2 cut(s)	624, 701
AfiI	CCNNNNNNNGG	2 cut(s)	361, 632
AgsI	TTSAA	3 cut(s)	251, 294, 544
AhdI	GACNNNNNGTC	2 cut(s)	358, 502
AhlI	ACTAGT	1 cut(s)	472
AjnI	CCWGG	1 cut(s)	130
AluBI	AGCT	2 cut(s)	76, 707
AluI	AGCT	2 cut(s)	76, 707
Alw21I	GWGCWC	1 cut(s)	78
Alw26I	GTCTC	2 cut(s)	463, 552
AlwI	GGATC	1 cut(s)	337
AlwNI	CAGNNNCTG	1 cut(s)	562
AoxI	GGCC	2 cut(s)	651, 690
ApeKI	GCWGC	3 cut(s)	337, 718, 736
Asp700I	GAANNNNTTC	1 cut(s)	126
Asp718I	GGTACC	1 cut(s)	622
AspLEI	GCGC	2 cut(s)	86, 424
AspS9I	GGNCC	1 cut(s)	403
AsuC2I	CCSGG	3 cut(s)	356, 480, 634
AsuHPI	GGTGA	4 cut(s)	183, 229, 249, 376
AvaII	GGWCC	1 cut(s)	403
BalI	TGGCCA	2 cut(s)	653, 692
BanI	GGYRCC	2 cut(s)	83, 622
BanII	GRGCYC	1 cut(s)	78
BarI	GAAGNNNNNNTAC	2 cut(s)	127, 159
Bbv12I	GWGCWC	1 cut(s)	78
BbvI	GCAGC	3 cut(s)	349, 730, 748
BccI	CCATC	2 cut(s)	28, 229
BceAI	ACGGC	1 cut(s)	560
BcgI	CGANNNNNNTGC	2 cut(s)	269, 303
BciT130I	CCWGG	1 cut(s)	132
BcnI	CCSGG	3 cut(s)	356, 480, 634
BcoDI	GTCTC	2 cut(s)	463, 552
BcuI	ACTAGT	1 cut(s)	472
BfaI	CTAG	1 cut(s)	473
BfoI	RGCGCY	1 cut(s)	87
BisI	GCNGC	8 cut(s)	82, 300, 338, 371, 420, 573, 719, 737
BlsI	GCNGC	8 cut(s)	83, 301, 339, 372, 421, 574, 720, 738
Bme1390I	CCNGG	4 cut(s)	132, 356, 480, 634
Bme18I	GGWCC	1 cut(s)	403
BmeRI	GACNNNNNGTC	2 cut(s)	358, 502
BmgT120I	GGNCC	1 cut(s)	403
BmiI	GGNNCC	3 cut(s)	85, 405, 624
BmrFI	CCNGG	4 cut(s)	132, 356, 480, 634
BmsI	GCATC	3 cut(s)	42, 324, 730
BpmI	CTGGAG	2 cut(s)	449, 584
Bpu10I	CCTNAGC	1 cut(s)	215
BpuEI	CTTGAG	1 cut(s)	534
BpuMI	CCSGG	3 cut(s)	356, 480, 634
BsaHI	GRCGYC	2 cut(s)	84, 96
BsaJI	CCNNGG	2 cut(s)	399, 478
Bsc4I	CCNNNNNNNGG	2 cut(s)	361, 632
Bse1I	ACTGG	1 cut(s)	276
BseBI	CCWGG	1 cut(s)	132
BseDI	CCNNGG	2 cut(s)	399, 478
BseGI	GGATG	1 cut(s)	709
BseLI	CCNNNNNNNGG	2 cut(s)	361, 632
BseMII	CTCAG	1 cut(s)	422
BseNI	ACTGG	1 cut(s)	276
BseRI	GAGGAG	1 cut(s)	41
BseXI	GCAGC	3 cut(s)	349, 730, 748
BsgI	GTGCAG	1 cut(s)	755
Bsh1236I	CGCG	1 cut(s)	424
BshFI	GGCC	2 cut(s)	653, 692
BshNI	GGYRCC	2 cut(s)	83, 622
BsiHKAI	GWGCWC	1 cut(s)	78
BsiSI	CCGG	3 cut(s)	356, 480, 633
BslFI	GGGAC	2 cut(s)	461, 499
BslI	CCNNNNNNNGG	2 cut(s)	361, 632
BsmAI	GTCTC	2 cut(s)	463, 552
BsmFI	GGGAC	2 cut(s)	461, 499
BsnI	GGCC	2 cut(s)	653, 692
Bsp1286I	GDGCHC	1 cut(s)	78
Bsp143I	GATC	1 cut(s)	342
BspACI	CCGC	9 cut(s)	81, 197, 299, 371, 419, 483, 573, 626, 716
BspANI	GGCC	2 cut(s)	653, 692
BspCNI	CTCAG	1 cut(s)	421
BspFNI	CGCG	1 cut(s)	424
BspHI	TCATGA	1 cut(s)	163
BspLI	GGNNCC	3 cut(s)	85, 405, 624
BspPI	GGATC	1 cut(s)	337
BspT107I	GGYRCC	2 cut(s)	83, 622
BsrI	ACTGG	1 cut(s)	276
BssECI	CCNNGG	2 cut(s)	399, 478
BssMI	GATC	1 cut(s)	342
BssNI	GRCGYC	2 cut(s)	84, 96
BssT1I	CCWWGG	1 cut(s)	399
Bst2UI	CCWGG	1 cut(s)	132
Bst4CI	ACNGT	1 cut(s)	161
Bst6I	CTCTTC	1 cut(s)	371
BstACI	GRCGYC	2 cut(s)	84, 96
BstC8I	GCNNGC	1 cut(s)	288
BstDEI	CTNAG	2 cut(s)	215, 408
BstF5I	GGATG	1 cut(s)	709
BstFNI	CGCG	1 cut(s)	424
BstH2I	RGCGCY	1 cut(s)	87
BstHHI	GCGC	2 cut(s)	86, 424
BstKTI	GATC	1 cut(s)	345
BstMAI	GTCTC	2 cut(s)	463, 552
BstMBI	GATC	1 cut(s)	342
BstMWI	GCNNNNNNNGC	2 cut(s)	296, 704
BstNI	CCWGG	1 cut(s)	132
BstSCI	CCNGG	4 cut(s)	130, 354, 478, 632
BstUI	CGCG	1 cut(s)	424
BstV1I	GCAGC	3 cut(s)	349, 730, 748
BsuRI	GGCC	2 cut(s)	653, 692
BtgZI	GCGATG	1 cut(s)	317
BtsCI	GGATG	1 cut(s)	709
BtsI	GCAGTG	1 cut(s)	498
BtsIMutI	CAGTG	1 cut(s)	498
Cac8I	GCNNGC	1 cut(s)	288
CaiI	CAGNNNCTG	1 cut(s)	562
CciI	TCATGA	1 cut(s)	163
CfoI	GCGC	2 cut(s)	86, 424
Cfr13I	GGNCC	1 cut(s)	403
CseI	GACGC	3 cut(s)	413, 492, 568
Csp6I	GTAC	2 cut(s)	623, 700
CviAII	CATG	4 cut(s)	148, 164, 508, 655
CviQI	GTAC	2 cut(s)	623, 700
DdeI	CTNAG	2 cut(s)	215, 408
DinI	GGCGCC	1 cut(s)	85
DpnI	GATC	1 cut(s)	344
DpnII	GATC	1 cut(s)	342
DriI	GACNNNNNGTC	2 cut(s)	358, 502
EaeI	YGGCCR	2 cut(s)	651, 690
Eam1104I	CTCTTC	1 cut(s)	371
Eam1105I	GACNNNNNGTC	2 cut(s)	358, 502
EarI	CTCTTC	1 cut(s)	371
EciI	GGCGGA	1 cut(s)	186
Ecl136II	GAGCTC	1 cut(s)	76
Eco130I	CCWWGG	1 cut(s)	399
Eco24I	GRGCYC	1 cut(s)	78
Eco47I	GGWCC	1 cut(s)	403
Eco53kI	GAGCTC	1 cut(s)	76
EcoICRI	GAGCTC	1 cut(s)	76
EcoO109I	RGGNCCY	1 cut(s)	403
EcoRII	CCWGG	1 cut(s)	130
EcoT14I	CCWWGG	1 cut(s)	399
EcoT38I	GRGCYC	1 cut(s)	78
EgeI	GGCGCC	1 cut(s)	85
EheI	GGCGCC	1 cut(s)	85
ErhI	CCWWGG	1 cut(s)	399
FaeI	CATG	4 cut(s)	151, 167, 511, 658
FaiI	YATR	7 cut(s)	149, 165, 230, 350, 509, 656, 689
FaqI	GGGAC	2 cut(s)	461, 499
FatI	CATG	4 cut(s)	147, 163, 507, 654
FauI	CCCGC	1 cut(s)	476
Fnu4HI	GCNGC	8 cut(s)	82, 300, 338, 371, 420, 573, 719, 737
FokI	GGATG	1 cut(s)	696
FriOI	GRGCYC	1 cut(s)	78
Fsp4HI	GCNGC	8 cut(s)	82, 300, 338, 371, 420, 573, 719, 737
FspBI	CTAG	1 cut(s)	473
GlaI	GCGC	2 cut(s)	85, 423
GluI	GCNGC	8 cut(s)	82, 300, 338, 371, 420, 573, 719, 737
GsuI	CTGGAG	2 cut(s)	449, 584
HaeII	RGCGCY	1 cut(s)	87
HaeIII	GGCC	2 cut(s)	653, 692
HapII	CCGG	3 cut(s)	356, 480, 633
HgaI	GACGC	3 cut(s)	413, 492, 568
HhaI	GCGC	2 cut(s)	86, 424
Hin1I	GRCGYC	2 cut(s)	84, 96
Hin1II	CATG	4 cut(s)	151, 167, 511, 658
Hin6I	GCGC	2 cut(s)	84, 422
HinP1I	GCGC	2 cut(s)	84, 422
HinfI	GANTC	2 cut(s)	324, 359
HpaII	CCGG	3 cut(s)	356, 480, 633
HphI	GGTGA	4 cut(s)	183, 229, 249, 376
Hpy188I	TCNGA	9 cut(s)	25, 73, 106, 121, 280, 323, 411, 558, 729
Hpy188III	TCNNGA	2 cut(s)	164, 466
Hpy99I	CGWCG	2 cut(s)	98, 101
HpyAV	CCTTC	2 cut(s)	123, 375
HpyCH4III	ACNGT	1 cut(s)	161
HpyCH4IV	ACGT	3 cut(s)	96, 387, 531
HpyCH4V	TGCA	4 cut(s)	55, 140, 337, 736
HpyF10VI	GCNNNNNNNGC	2 cut(s)	296, 704
HpyF3I	CTNAG	2 cut(s)	215, 408
HpySE526I	ACGT	3 cut(s)	96, 387, 531
Hsp92I	GRCGYC	2 cut(s)	84, 96
Hsp92II	CATG	4 cut(s)	151, 167, 511, 658
HspAI	GCGC	2 cut(s)	84, 422
KasI	GGCGCC	1 cut(s)	83
KpnI	GGTACC	1 cut(s)	626
Kzo9I	GATC	1 cut(s)	342
LmnI	GCTCC	1 cut(s)	28
Lsp1109I	GCAGC	3 cut(s)	349, 730, 748
LweI	GCATC	3 cut(s)	42, 324, 730
MaeI	CTAG	1 cut(s)	473
MaeII	ACGT	3 cut(s)	96, 387, 531
MaeIII	GTNAC	1 cut(s)	425
MalI	GATC	1 cut(s)	344
MboI	GATC	1 cut(s)	342
MboII	GAAGA	3 cut(s)	180, 388, 403
MhlI	GDGCHC	1 cut(s)	78
MlsI	TGGCCA	2 cut(s)	653, 692
MluCI	AATT	3 cut(s)	125, 670, 682
MluNI	TGGCCA	2 cut(s)	653, 692
Mly113I	GGCGCC	1 cut(s)	84
MlyI	GAGTC	1 cut(s)	368
MmeI	TCCRAC	2 cut(s)	129, 303
Mox20I	TGGCCA	2 cut(s)	653, 692
MroXI	GAANNNNTTC	1 cut(s)	126
MscI	TGGCCA	2 cut(s)	653, 692
MseI	TTAA	2 cut(s)	9, 210
MslI	CAYNNNNRTG	1 cut(s)	729
Msp20I	TGGCCA	2 cut(s)	653, 692
MspI	CCGG	3 cut(s)	356, 480, 633
MspR9I	CCNGG	4 cut(s)	132, 356, 480, 634
MvaI	CCWGG	1 cut(s)	132
MvnI	CGCG	1 cut(s)	424
MwoI	GCNNNNNNNGC	2 cut(s)	296, 704
NarI	GGCGCC	1 cut(s)	84
NciI	CCSGG	3 cut(s)	356, 480, 634
NdeII	GATC	1 cut(s)	342
NlaIII	CATG	4 cut(s)	151, 167, 511, 658
NlaIV	GGNNCC	3 cut(s)	85, 405, 624
NmuCI	GTSAC	1 cut(s)	425
PagI	TCATGA	1 cut(s)	163
PcsI	WCGNNNNNNNCGW	2 cut(s)	102, 338
PdmI	GAANNNNTTC	1 cut(s)	126
PfeI	GAWTC	1 cut(s)	324
PkrI	GCNGC	8 cut(s)	83, 301, 339, 372, 421, 574, 720, 738
PleI	GAGTC	1 cut(s)	367
PluTI	GGCGCC	1 cut(s)	87
PpsI	GAGTC	1 cut(s)	367
PpuMI	RGGWCCY	1 cut(s)	403
Psp124BI	GAGCTC	1 cut(s)	78
Psp5II	RGGWCCY	1 cut(s)	403
Psp6I	CCWGG	1 cut(s)	130
PspGI	CCWGG	1 cut(s)	130
PspN4I	GGNNCC	3 cut(s)	85, 405, 624
PspPI	GGNCC	1 cut(s)	403
PspPPI	RGGWCCY	1 cut(s)	403
PstNI	CAGNNNCTG	1 cut(s)	562
RsaI	GTAC	2 cut(s)	624, 701
RsaNI	GTAC	2 cut(s)	623, 700
RseI	CAYNNNNRTG	1 cut(s)	729
SacI	GAGCTC	1 cut(s)	78
SaqAI	TTAA	2 cut(s)	9, 210
SatI	GCNGC	8 cut(s)	82, 300, 338, 371, 420, 573, 719, 737
Sau3AI	GATC	1 cut(s)	342
Sau96I	GGNCC	1 cut(s)	403
SchI	GAGTC	1 cut(s)	368
ScrFI	CCNGG	4 cut(s)	132, 356, 480, 634
SduI	GDGCHC	1 cut(s)	78
SfaNI	GCATC	3 cut(s)	42, 324, 730
SfoI	GGCGCC	1 cut(s)	85
SinI	GGWCC	1 cut(s)	403
SmiMI	CAYNNNNRTG	1 cut(s)	729
SmlI	CTYRAG	1 cut(s)	549
SmoI	CTYRAG	1 cut(s)	549
SpeI	ACTAGT	1 cut(s)	472
Sse9I	AATT	3 cut(s)	125, 670, 682
SsiI	CCGC	9 cut(s)	81, 197, 299, 371, 419, 483, 573, 626, 716
SspDI	GGCGCC	1 cut(s)	83
SspMI	CTAG	1 cut(s)	473
SstI	GAGCTC	1 cut(s)	78
StyD4I	CCNGG	4 cut(s)	130, 354, 478, 632
StyI	CCWWGG	1 cut(s)	399
TaaI	ACNGT	1 cut(s)	161
TaiI	ACGT	3 cut(s)	99, 390, 534
TaqI	TCGA	1 cut(s)	332
TasI	AATT	3 cut(s)	125, 670, 682
TauI	GCSGC	5 cut(s)	84, 302, 373, 422, 575
TfiI	GAWTC	1 cut(s)	324
Tru1I	TTAA	2 cut(s)	9, 210
Tru9I	TTAA	2 cut(s)	9, 210
TscAI	CASTG	1 cut(s)	505
TseFI	GTSAC	1 cut(s)	425
TseI	GCWGC	3 cut(s)	337, 718, 736
Tsp45I	GTSAC	1 cut(s)	425
TspRI	CASTG	1 cut(s)	505
VpaK11BI	GGWCC	1 cut(s)	403
XmnI	GAANNNNTTC	1 cut(s)	126
XspI	CTAG	1 cut(s)	473
ZraI	GACGTC	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.