Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004140

Physical Location & Seq

Genomic Coordinates Forward (+)

37109786 .. 37111192

Gene Structure 1407 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G434000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGATATTGTCCAGTTAAAATCAGAGGAGCAGATGGAGATGATGATGACGATGCAAATGGACAAAATCTCAGAGCTCTGCGGAGCCTACAACGACGTCTCAGACCTTCCCCCATCTGATCACACTTTCTCTACCATCACCACCACAACAACAAGTCCCAATAGCATCACCTCTAACACCTCCATCTCCATGCCCCATTACACCGACCAACAAAACCCACAAAACATCCCCTCACCAAATTCCCAGTCCTTTCTAAACCTCCCAACAATCCCAACAATCCCATCAACCATCTCCTTCTCCAACACCACAAACCTAACTGACCAAACATCCAATTCCTCAAATGGGTTCCTACCATCTTCCCAAAAACGCACCTCCATGGCAGCCATGAGAGAAATGATATTCAGAATTGCAGCCATGCAGCCAATCCACATCGACCCAGAATCCGTGAAGCCGCCAAAGAGAAGAAACGTCAAGATTTCCAAGGACCCTCAGAGCGTGGCGGCTCGCCACAGGAGAGAGAGGATCAGCGAGAGGATCAGAATTCTGCAGAGACTTGTGCCCGGCGGGACGAAAATGGACACGGCCTCCATGTTAGACGAGGCCATTCACTATGTCAAGTTCTTGAAGTCTCAGATTCAAACGCTGGAGAGAGCCGCGGCTAATAGGCCTACCGGGATTGGGTTCCCTGTGGCCATGTCTAGCGGGAGCTATGGCCTCCATTCAGTGGCAAAAGCTTACCAGGCTTCTTGCCATGAGAATGTGCAGCATTTTGGAGATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

261

Amino Acids

28.82

Weight (kDa)

8.54

Isoelectric Point (pI)

56.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004140)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50330 AT5G67060 AT5G67060
fragaria_vesca	FvH4_1g16130 FvH4_2g34280
malus_domestica	MD02G1173400.v1.1 MD08G1098800.v1.1 MD15G1081100.v1.1 MD15G1284900.v1.1
prunus_persica	Prupe.1G434000_v2.0.a1 Prupe.7G132300_v2.0.a1
pyrus_communis	pycom15g07560 pycom15g07580
rosa_chinensis	RchiOBHm_Chr2g0105811 RchiOBHm_Chr6g0308101
rosa_laevigata	RLG00000010668 RLG00000017461
rosa_multiflora	Rmu_sc0005706.1_g000001 Rmu_sc0010497.1_g000002
rosa_roxburghii	Rroxscaffold_2G00137880 Rroxscaffold_7G00160540
rosa_rugosa	Rorug02G0130500 Rorug06G0364000
rosa_samantha	Rh2AG181700 Rh2BG191300 Rh2CG186000 Rh2DG187900 Rh6AG472700 Rh6BG483900 Rh6CG488800 Rh6DG475100
rosa_wichuraiana	Rw2G014230 Rw6G041250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	99
AccB7I	CCANNNNNTGG	1 cut(s)	724
AccII	CGCG	1 cut(s)	656
AciI	CCGC	7 cut(s)	81, 452, 500, 564, 654, 656, 702
AclWI	GGATC	2 cut(s)	530, 542
AcoI	YGGCCR	1 cut(s)	690
AcsI	RAATTY	2 cut(s)	238, 540
AcyI	GRCGYC	1 cut(s)	96
AfiI	CCNNNNNNNGG	3 cut(s)	342, 678, 724
AgsI	TTSAA	2 cut(s)	625, 638
AjnI	CCWGG	1 cut(s)	738
AluBI	AGCT	3 cut(s)	76, 708, 734
AluI	AGCT	3 cut(s)	76, 708, 734
Alw21I	GWGCWC	1 cut(s)	78
Alw26I	GTCTC	3 cut(s)	103, 544, 633
AlwI	GGATC	2 cut(s)	530, 542
AoxI	GGCC	5 cut(s)	582, 600, 665, 690, 712
ApeKI	GCWGC	4 cut(s)	380, 410, 418, 763
ApoI	RAATTY	2 cut(s)	238, 540
ArsI	GACNNNNNNTTYG	2 cut(s)	230, 262
AspS9I	GGNCC	1 cut(s)	484
AsuC2I	CCSGG	2 cut(s)	561, 673
AsuHPI	GGTGA	3 cut(s)	130, 160, 225
AvaII	GGWCC	1 cut(s)	484
BaeGI	GKGCMC	1 cut(s)	561
BalI	TGGCCA	1 cut(s)	692
BanII	GRGCYC	1 cut(s)	78
Bbv12I	GWGCWC	1 cut(s)	78
BbvI	GCAGC	4 cut(s)	392, 422, 430, 775
BccI	CCATC	7 cut(s)	28, 121, 143, 191, 289, 296, 361
BceAI	ACGGC	1 cut(s)	597
BciT130I	CCWGG	1 cut(s)	740
BclI	TGATCA	1 cut(s)	118
BcnI	CCSGG	2 cut(s)	561, 673
BcoDI	GTCTC	3 cut(s)	103, 544, 633
BfaI	CTAG	1 cut(s)	699
BfmI	CTRYAG	1 cut(s)	545
BisI	GCNGC	8 cut(s)	381, 411, 419, 452, 501, 654, 657, 764
BlsI	GCNGC	8 cut(s)	382, 412, 420, 453, 502, 655, 658, 765
Bme1390I	CCNGG	3 cut(s)	561, 673, 740
Bme18I	GGWCC	1 cut(s)	484
BmgT120I	GGNCC	1 cut(s)	484
BmiI	GGNNCC	4 cut(s)	85, 347, 486, 683
BmrFI	CCNGG	3 cut(s)	561, 673, 740
BmrI	ACTGGG	1 cut(s)	238
BmsI	GCATC	3 cut(s)	42, 174, 766
BmuI	ACTGGG	1 cut(s)	238
BpmI	CTGGAG	1 cut(s)	665
BpuMI	CCSGG	2 cut(s)	561, 673
BsaHI	GRCGYC	1 cut(s)	96
BsaJI	CCNNGG	3 cut(s)	375, 480, 654
BsaXI	ACNNNNNCTCC	2 cut(s)	569, 599
Bsc4I	CCNNNNNNNGG	3 cut(s)	342, 678, 724
Bse1I	ACTGG	2 cut(s)	13, 244
BseBI	CCWGG	1 cut(s)	740
BseDI	CCNNGG	3 cut(s)	375, 480, 654
BseGI	GGATG	2 cut(s)	225, 326
BseLI	CCNNNNNNNGG	3 cut(s)	342, 678, 724
BseMII	CTCAG	4 cut(s)	84, 114, 503, 644
BseNI	ACTGG	2 cut(s)	13, 244
BseRI	GAGGAG	1 cut(s)	41
BseSI	GKGCMC	1 cut(s)	561
BseXI	GCAGC	4 cut(s)	392, 422, 430, 775
BsgI	GTGCAG	1 cut(s)	782
Bsh1236I	CGCG	1 cut(s)	656
BshFI	GGCC	5 cut(s)	584, 602, 667, 692, 714
BsiHKAI	GWGCWC	1 cut(s)	78
BsiSI	CCGG	2 cut(s)	561, 672
BslFI	GGGAC	2 cut(s)	141, 580
BslI	CCNNNNNNNGG	3 cut(s)	342, 678, 724
BsmAI	GTCTC	3 cut(s)	103, 544, 633
BsmBI	CGTCTC	1 cut(s)	103
BsmFI	GGGAC	2 cut(s)	141, 580
BsnI	GGCC	5 cut(s)	584, 602, 667, 692, 714
Bsp1286I	GDGCHC	2 cut(s)	78, 561
Bsp143I	GATC	3 cut(s)	118, 522, 534
Bsp19I	CCATGG	1 cut(s)	375
BspACI	CCGC	7 cut(s)	81, 452, 500, 564, 654, 656, 702
BspANI	GGCC	5 cut(s)	584, 602, 667, 692, 714
BspCNI	CTCAG	4 cut(s)	83, 113, 502, 643
BspFNI	CGCG	1 cut(s)	656
BspLI	GGNNCC	4 cut(s)	85, 347, 486, 683
BspMAI	CTGCAG	1 cut(s)	549
BspPI	GGATC	2 cut(s)	530, 542
BsrI	ACTGG	2 cut(s)	13, 244
BssECI	CCNNGG	3 cut(s)	375, 480, 654
BssMI	GATC	3 cut(s)	118, 522, 534
BssNI	GRCGYC	1 cut(s)	96
BssT1I	CCWWGG	2 cut(s)	375, 480
Bst2UI	CCWGG	1 cut(s)	740
BstACI	GRCGYC	1 cut(s)	96
BstC8I	GCNNGC	1 cut(s)	505
BstDEI	CTNAG	4 cut(s)	70, 100, 489, 630
BstDSI	CCRYGG	2 cut(s)	375, 654
BstF5I	GGATG	2 cut(s)	225, 326
BstFNI	CGCG	1 cut(s)	656
BstKTI	GATC	3 cut(s)	121, 525, 537
BstMAI	GTCTC	3 cut(s)	103, 544, 633
BstMBI	GATC	3 cut(s)	118, 522, 534
BstMWI	GCNNNNNNNGC	1 cut(s)	740
BstNI	CCWGG	1 cut(s)	740
BstSCI	CCNGG	3 cut(s)	559, 671, 738
BstSFI	CTRYAG	1 cut(s)	545
BstSLI	GKGCMC	1 cut(s)	561
BstUI	CGCG	1 cut(s)	656
BstV1I	GCAGC	4 cut(s)	392, 422, 430, 775
BsuRI	GGCC	5 cut(s)	584, 602, 667, 692, 714
BtgI	CCRYGG	2 cut(s)	375, 654
BtsCI	GGATG	2 cut(s)	225, 326
BtsIMutI	CAGTG	1 cut(s)	729
Cac8I	GCNNGC	1 cut(s)	505
Cfr13I	GGNCC	1 cut(s)	484
Cfr42I	CCGCGG	1 cut(s)	657
CviAII	CATG	7 cut(s)	190, 376, 385, 415, 589, 694, 752
DdeI	CTNAG	4 cut(s)	70, 100, 489, 630
DpnI	GATC	3 cut(s)	120, 524, 536
DpnII	GATC	3 cut(s)	118, 522, 534
EaeI	YGGCCR	1 cut(s)	690
Ecl136II	GAGCTC	1 cut(s)	76
Eco130I	CCWWGG	2 cut(s)	375, 480
Eco147I	AGGCCT	1 cut(s)	667
Eco24I	GRGCYC	1 cut(s)	78
Eco47I	GGWCC	1 cut(s)	484
Eco53kI	GAGCTC	1 cut(s)	76
EcoICRI	GAGCTC	1 cut(s)	76
EcoO109I	RGGNCCY	1 cut(s)	484
EcoRI	GAATTC	1 cut(s)	540
EcoRII	CCWGG	1 cut(s)	738
EcoT14I	CCWWGG	2 cut(s)	375, 480
EcoT38I	GRGCYC	1 cut(s)	78
ErhI	CCWWGG	2 cut(s)	375, 480
Esp3I	CGTCTC	1 cut(s)	103
FaeI	CATG	7 cut(s)	193, 379, 388, 418, 592, 697, 755
FaiI	YATR	9 cut(s)	191, 377, 386, 416, 590, 612, 695, 711, 753
FaqI	GGGAC	2 cut(s)	141, 580
FatI	CATG	7 cut(s)	189, 375, 384, 414, 588, 693, 751
FauI	CCCGC	2 cut(s)	557, 695
FbaI	TGATCA	1 cut(s)	118
Fnu4HI	GCNGC	8 cut(s)	381, 411, 419, 452, 501, 654, 657, 764
FokI	GGATG	2 cut(s)	212, 313
FriOI	GRGCYC	1 cut(s)	78
Fsp4HI	GCNGC	8 cut(s)	381, 411, 419, 452, 501, 654, 657, 764
FspBI	CTAG	1 cut(s)	699
GluI	GCNGC	8 cut(s)	381, 411, 419, 452, 501, 654, 657, 764
GsuI	CTGGAG	1 cut(s)	665
HaeIII	GGCC	5 cut(s)	584, 602, 667, 692, 714
HapII	CCGG	2 cut(s)	561, 672
Hin1I	GRCGYC	1 cut(s)	96
Hin1II	CATG	7 cut(s)	193, 379, 388, 418, 592, 697, 755
HindIII	AAGCTT	1 cut(s)	732
HinfI	GANTC	2 cut(s)	440, 634
HpaII	CCGG	2 cut(s)	561, 672
HphI	GGTGA	3 cut(s)	130, 160, 225
Hpy188I	TCNGA	8 cut(s)	25, 73, 103, 118, 404, 492, 539, 633
Hpy188III	TCNNGA	2 cut(s)	472, 622
Hpy99I	CGWCG	1 cut(s)	98
HpyAV	CCTTC	2 cut(s)	116, 304
HpyCH4IV	ACGT	2 cut(s)	96, 468
HpyCH4V	TGCA	5 cut(s)	55, 410, 418, 547, 763
HpyF10VI	GCNNNNNNNGC	1 cut(s)	740
HpyF3I	CTNAG	4 cut(s)	70, 100, 489, 630
HpySE526I	ACGT	2 cut(s)	96, 468
Hsp92I	GRCGYC	1 cut(s)	96
Hsp92II	CATG	7 cut(s)	193, 379, 388, 418, 592, 697, 755
Ksp22I	TGATCA	1 cut(s)	118
KspI	CCGCGG	1 cut(s)	657
Kzo9I	GATC	3 cut(s)	118, 522, 534
LmnI	GCTCC	3 cut(s)	28, 83, 705
Lsp1109I	GCAGC	4 cut(s)	392, 422, 430, 775
LweI	GCATC	3 cut(s)	42, 174, 766
MaeI	CTAG	1 cut(s)	699
MaeII	ACGT	2 cut(s)	96, 468
MalI	GATC	3 cut(s)	120, 524, 536
MboI	GATC	3 cut(s)	118, 522, 534
MboII	GAAGA	2 cut(s)	348, 474
MhlI	GDGCHC	2 cut(s)	78, 561
MlsI	TGGCCA	1 cut(s)	692
MluCI	AATT	4 cut(s)	238, 331, 405, 540
MluNI	TGGCCA	1 cut(s)	692
MmeI	TCCRAC	1 cut(s)	324
Mox20I	TGGCCA	1 cut(s)	692
MscI	TGGCCA	1 cut(s)	692
MseI	TTAA	1 cut(s)	17
MslI	CAYNNNNRTG	3 cut(s)	188, 374, 756
Msp20I	TGGCCA	1 cut(s)	692
MspA1I	CMGCKG	1 cut(s)	656
MspI	CCGG	2 cut(s)	561, 672
MspR9I	CCNGG	3 cut(s)	561, 673, 740
MvaI	CCWGG	1 cut(s)	740
MvnI	CGCG	1 cut(s)	656
MwoI	GCNNNNNNNGC	1 cut(s)	740
NciI	CCSGG	2 cut(s)	561, 673
NcoI	CCATGG	1 cut(s)	375
NdeII	GATC	3 cut(s)	118, 522, 534
NlaIII	CATG	7 cut(s)	193, 379, 388, 418, 592, 697, 755
NlaIV	GGNNCC	4 cut(s)	85, 347, 486, 683
PceI	AGGCCT	1 cut(s)	667
PfeI	GAWTC	2 cut(s)	440, 634
PflMI	CCANNNNNTGG	1 cut(s)	724
PkrI	GCNGC	8 cut(s)	382, 412, 420, 453, 502, 655, 658, 765
PpuMI	RGGWCCY	1 cut(s)	484
Psp124BI	GAGCTC	1 cut(s)	78
Psp5II	RGGWCCY	1 cut(s)	484
Psp6I	CCWGG	1 cut(s)	738
PspGI	CCWGG	1 cut(s)	738
PspN4I	GGNNCC	4 cut(s)	85, 347, 486, 683
PspPI	GGNCC	1 cut(s)	484
PspPPI	RGGWCCY	1 cut(s)	484
PstI	CTGCAG	1 cut(s)	549
RseI	CAYNNNNRTG	3 cut(s)	188, 374, 756
SacI	GAGCTC	1 cut(s)	78
SacII	CCGCGG	1 cut(s)	657
SaqAI	TTAA	1 cut(s)	17
SatI	GCNGC	8 cut(s)	381, 411, 419, 452, 501, 654, 657, 764
Sau3AI	GATC	3 cut(s)	118, 522, 534
Sau96I	GGNCC	1 cut(s)	484
ScrFI	CCNGG	3 cut(s)	561, 673, 740
SduI	GDGCHC	2 cut(s)	78, 561
SfaNI	GCATC	3 cut(s)	42, 174, 766
SfcI	CTRYAG	1 cut(s)	545
Sfr303I	CCGCGG	1 cut(s)	657
SgrBI	CCGCGG	1 cut(s)	657
SinI	GGWCC	1 cut(s)	484
SmiMI	CAYNNNNRTG	3 cut(s)	188, 374, 756
Sse9I	AATT	4 cut(s)	238, 331, 405, 540
SseBI	AGGCCT	1 cut(s)	667
SsiI	CCGC	7 cut(s)	81, 452, 500, 564, 654, 656, 702
SspMI	CTAG	1 cut(s)	699
SstI	GAGCTC	1 cut(s)	78
StuI	AGGCCT	1 cut(s)	667
StyD4I	CCNGG	3 cut(s)	559, 671, 738
StyI	CCWWGG	2 cut(s)	375, 480
TaiI	ACGT	2 cut(s)	99, 471
TaqI	TCGA	1 cut(s)	432
TasI	AATT	4 cut(s)	238, 331, 405, 540
TauI	GCSGC	4 cut(s)	454, 503, 656, 659
TfiI	GAWTC	2 cut(s)	440, 634
Tru1I	TTAA	1 cut(s)	17
Tru9I	TTAA	1 cut(s)	17
TscAI	CASTG	1 cut(s)	729
TseI	GCWGC	4 cut(s)	380, 410, 418, 763
TspGWI	ACGGA	1 cut(s)	433
TspRI	CASTG	1 cut(s)	729
Van91I	CCANNNNNTGG	1 cut(s)	724
VpaK11BI	GGWCC	1 cut(s)	484
XapI	RAATTY	2 cut(s)	238, 540
XspI	CTAG	1 cut(s)	699
ZraI	GACGTC	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.