Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0004140

Physical Location & Seq

Genomic Coordinates Forward (+)

15110479 .. 15111711

Gene Structure 1233 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G132300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGATGTTGACATGCTAAAATCATCATCATCATCATCATCAGCAGGTGATGATCACCATCATCACATGGACATGATGACAATGATGATGCAAATGCAAATGCACAAGCAGCAGTCTTCTGATCACTTCTGTGACTCTTACCACAACAGCAGCAACCCCACATTTCCAGAGATAGATTTCACTTGGGGATCAAACTCAAACATCACCAACAACATTGAAACAATCTCATCTCTCCCCATTTTCCACAACCCGAATGCAGTTTCTTCACAACATTCACAGCCCACGTTGATAAACCCTGCCTTGCCTTCCTCTGTTTCTTTCATGGGAAACCAAATTCAGGAGCCCCTCACCCCAAGGCTCATCAAAACTAGCCCTCCTCCTACTTCATATGAGAAGAGAAACTCCATGGCTGCAATGAGAGAGATGATTTTCAGAATTGCGGCAATGCAGCCAATTCAAATAGACCCCGAATCGGTGAAGCCCCCGAAGAGGAGGAATGTTAAGATTTCTAAAGATCCACAGAGCGTGGCAGCGAGGCACAGGAGGGAAAGGATAAGCGAGAAGATTAGAATTCTGCAGAGACTTGTTCCTGGCGGGACTAAAATGGACACAGCTTCTATGCTAGATGAAGCTATACATTATGTGAAGTTTTTGAAGAAACAAGTGCAGACTTTGGAGAGGGCTGGGGCAGATAGACCGATTGGTGTTGGCTTCCAGGGGGCTGGTCAATTGGGCAATGTGAACTATTCTGCTTTGTTGAGGCCTTCTCACTTGGTTGGGTCTATGCAGATGCTGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

267

Amino Acids

29.82

Weight (kDa)

9.51

Isoelectric Point (pI)

59.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004140)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50330 AT5G67060 AT5G67060
fragaria_vesca	FvH4_1g16130 FvH4_2g34280
malus_domestica	MD02G1173400.v1.1 MD08G1098800.v1.1 MD15G1081100.v1.1 MD15G1284900.v1.1
prunus_persica	Prupe.1G434000_v2.0.a1 Prupe.7G132300_v2.0.a1
pyrus_communis	pycom15g07560 pycom15g07580
rosa_chinensis	RchiOBHm_Chr2g0105811 RchiOBHm_Chr6g0308101
rosa_laevigata	RLG00000010668 RLG00000017461
rosa_multiflora	Rmu_sc0005706.1_g000001 Rmu_sc0010497.1_g000002
rosa_roxburghii	Rroxscaffold_2G00137880 Rroxscaffold_7G00160540
rosa_rugosa	Rorug02G0130500 Rorug06G0364000
rosa_samantha	Rh2AG181700 Rh2BG191300 Rh2CG186000 Rh2DG187900 Rh6AG472700 Rh6BG483900 Rh6CG488800 Rh6DG475100
rosa_wichuraiana	Rw2G014230 Rw6G041250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	35
Acc36I	ACCTGC	1 cut(s)	35
AciI	CCGC	2 cut(s)	440, 594
AclWI	GGATC	2 cut(s)	196, 509
AcsI	RAATTY	2 cut(s)	333, 570
AfiI	CCNNNNNNNGG	3 cut(s)	337, 472, 489
AgsI	TTSAA	3 cut(s)	218, 458, 655
AjnI	CCWGG	2 cut(s)	589, 714
AleI	CACNNNNGTG	1 cut(s)	129
AluBI	AGCT	2 cut(s)	614, 632
AluI	AGCT	2 cut(s)	614, 632
Alw26I	GTCTC	1 cut(s)	574
AlwI	GGATC	2 cut(s)	196, 509
AlwNI	CAGNNNCTG	1 cut(s)	793
AoxI	GGCC	1 cut(s)	761
ApeKI	GCWGC	5 cut(s)	109, 150, 410, 448, 530
ApoI	RAATTY	2 cut(s)	333, 570
AsuHPI	GGTGA	5 cut(s)	47, 59, 196, 340, 487
BanII	GRGCYC	1 cut(s)	345
BbsI	GAAGAC	1 cut(s)	108
BbvI	GCAGC	5 cut(s)	121, 162, 397, 460, 542
BccI	CCATC	1 cut(s)	66
BciT130I	CCWGG	2 cut(s)	591, 716
BclI	TGATCA	2 cut(s)	52, 121
BcoDI	GTCTC	1 cut(s)	574
BfaI	CTAG	2 cut(s)	369, 623
BfmI	CTRYAG	1 cut(s)	575
BfuAI	ACCTGC	1 cut(s)	35
BisI	GCNGC	6 cut(s)	110, 151, 411, 441, 449, 531
BlsI	GCNGC	6 cut(s)	111, 152, 412, 442, 450, 532
Bme1390I	CCNGG	2 cut(s)	591, 716
BmiI	GGNNCC	1 cut(s)	342
BmrFI	CCNGG	2 cut(s)	591, 716
BmsI	GCATC	2 cut(s)	78, 780
BpiI	GAAGAC	1 cut(s)	108
BplI	GAGNNNNNCTC	2 cut(s)	751, 783
BsaBI	GATNNNNATC	1 cut(s)	57
BsaJI	CCNNGG	3 cut(s)	353, 405, 715
BsaXI	ACNNNNNCTCC	2 cut(s)	358, 388
Bsc4I	CCNNNNNNNGG	3 cut(s)	337, 472, 489
Bse3DI	GCAATG	3 cut(s)	420, 450, 742
Bse8I	GATNNNNATC	1 cut(s)	57
BseBI	CCWGG	2 cut(s)	591, 716
BseDI	CCNNGG	3 cut(s)	353, 405, 715
BseGI	GGATG	1 cut(s)	10
BseJI	GATNNNNATC	1 cut(s)	57
BseLI	CCNNNNNNNGG	3 cut(s)	337, 472, 489
BseMI	GCAATG	3 cut(s)	420, 450, 742
BseMII	CTCAG	1 cut(s)	785
BseRI	GAGGAG	2 cut(s)	366, 505
BseXI	GCAGC	5 cut(s)	121, 162, 397, 460, 542
BseYI	CCCAGC	1 cut(s)	683
BsgI	GTGCAG	1 cut(s)	686
BshFI	GGCC	1 cut(s)	763
BslFI	GGGAC	1 cut(s)	610
BslI	CCNNNNNNNGG	3 cut(s)	337, 472, 489
BsmAI	GTCTC	1 cut(s)	574
BsmFI	GGGAC	1 cut(s)	610
BsmI	GAATGC	1 cut(s)	259
BsnI	GGCC	1 cut(s)	763
Bsp1286I	GDGCHC	1 cut(s)	345
Bsp143I	GATC	4 cut(s)	52, 121, 188, 514
Bsp19I	CCATGG	1 cut(s)	405
BspACI	CCGC	2 cut(s)	440, 594
BspANI	GGCC	1 cut(s)	763
BspCNI	CTCAG	1 cut(s)	786
BspLI	GGNNCC	1 cut(s)	342
BspMAI	CTGCAG	1 cut(s)	579
BspMI	ACCTGC	1 cut(s)	35
BspPI	GGATC	2 cut(s)	196, 509
BsrDI	GCAATG	3 cut(s)	420, 450, 742
BssECI	CCNNGG	3 cut(s)	353, 405, 715
BssMI	GATC	4 cut(s)	52, 121, 188, 514
BssT1I	CCWWGG	2 cut(s)	353, 405
Bst2UI	CCWGG	2 cut(s)	591, 716
Bst6I	CTCTTC	2 cut(s)	389, 482
BstDEI	CTNAG	1 cut(s)	794
BstDSI	CCRYGG	1 cut(s)	405
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	4 cut(s)	55, 124, 191, 517
BstMAI	GTCTC	1 cut(s)	574
BstMBI	GATC	4 cut(s)	52, 121, 188, 514
BstMWI	GCNNNNNNNGC	1 cut(s)	109
BstNI	CCWGG	2 cut(s)	591, 716
BstNSI	RCATGY	1 cut(s)	16
BstSCI	CCNGG	2 cut(s)	589, 714
BstSFI	CTRYAG	1 cut(s)	575
BstV1I	GCAGC	5 cut(s)	121, 162, 397, 460, 542
BstV2I	GAAGAC	1 cut(s)	108
BstX2I	RGATCY	1 cut(s)	514
BstXI	CCANNNNNNTGG	1 cut(s)	722
BstYI	RGATCY	1 cut(s)	514
BsuRI	GGCC	1 cut(s)	763
BtgI	CCRYGG	1 cut(s)	405
BtsCI	GGATG	1 cut(s)	10
BveI	ACCTGC	1 cut(s)	35
CaiI	CAGNNNCTG	1 cut(s)	793
CviAII	CATG	5 cut(s)	13, 67, 73, 322, 406
DdeI	CTNAG	1 cut(s)	794
DpnI	GATC	4 cut(s)	54, 123, 190, 516
DpnII	GATC	4 cut(s)	52, 121, 188, 514
Eam1104I	CTCTTC	2 cut(s)	389, 482
EarI	CTCTTC	2 cut(s)	389, 482
Eco130I	CCWWGG	2 cut(s)	353, 405
Eco147I	AGGCCT	1 cut(s)	763
Eco24I	GRGCYC	1 cut(s)	345
EcoRI	GAATTC	1 cut(s)	570
EcoRII	CCWGG	2 cut(s)	589, 714
EcoT14I	CCWWGG	2 cut(s)	353, 405
EcoT38I	GRGCYC	1 cut(s)	345
ErhI	CCWWGG	2 cut(s)	353, 405
FaeI	CATG	5 cut(s)	16, 70, 76, 325, 409
FaqI	GGGAC	1 cut(s)	610
FatI	CATG	5 cut(s)	12, 66, 72, 321, 405
FauI	CCCGC	1 cut(s)	587
FauNDI	CATATG	1 cut(s)	388
FbaI	TGATCA	2 cut(s)	52, 121
Fnu4HI	GCNGC	6 cut(s)	110, 151, 411, 441, 449, 531
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	1 cut(s)	345
Fsp4HI	GCNGC	6 cut(s)	110, 151, 411, 441, 449, 531
FspBI	CTAG	2 cut(s)	369, 623
GluI	GCNGC	6 cut(s)	110, 151, 411, 441, 449, 531
GsaI	CCCAGC	1 cut(s)	687
HaeIII	GGCC	1 cut(s)	763
Hin1II	CATG	5 cut(s)	16, 70, 76, 325, 409
HincII	GTYRAC	1 cut(s)	10
HindII	GTYRAC	1 cut(s)	10
HinfI	GANTC	2 cut(s)	134, 470
HphI	GGTGA	5 cut(s)	47, 59, 196, 340, 487
Hpy166II	GTNNAC	2 cut(s)	10, 742
Hpy188I	TCNGA	2 cut(s)	121, 434
Hpy188III	TCNNGA	2 cut(s)	167, 338
Hpy8I	GTNNAC	2 cut(s)	10, 742
HpyAV	CCTTC	2 cut(s)	315, 774
HpyCH4IV	ACGT	1 cut(s)	284
HpyCH4V	TGCA	9 cut(s)	91, 97, 103, 257, 413, 448, 577, 667, 787
HpyF10VI	GCNNNNNNNGC	1 cut(s)	109
HpyF3I	CTNAG	1 cut(s)	794
HpySE526I	ACGT	1 cut(s)	284
Hsp92II	CATG	5 cut(s)	16, 70, 76, 325, 409
Ksp22I	TGATCA	2 cut(s)	52, 121
Kzo9I	GATC	4 cut(s)	52, 121, 188, 514
LmnI	GCTCC	1 cut(s)	340
Lsp1109I	GCAGC	5 cut(s)	121, 162, 397, 460, 542
LweI	GCATC	2 cut(s)	78, 780
MaeI	CTAG	2 cut(s)	369, 623
MaeII	ACGT	1 cut(s)	284
MaeIII	GTNAC	1 cut(s)	131
MalI	GATC	4 cut(s)	54, 123, 190, 516
MboI	GATC	4 cut(s)	52, 121, 188, 514
MboII	GAAGA	6 cut(s)	108, 255, 406, 499, 574, 667
MfeI	CAATTG	1 cut(s)	728
MflI	RGATCY	1 cut(s)	514
MhlI	GDGCHC	1 cut(s)	345
MluCI	AATT	5 cut(s)	333, 435, 453, 570, 728
MlyI	GAGTC	1 cut(s)	128
MseI	TTAA	1 cut(s)	501
MslI	CAYNNNNRTG	2 cut(s)	71, 129
MspR9I	CCNGG	2 cut(s)	591, 716
MunI	CAATTG	1 cut(s)	728
Mva1269I	GAATGC	1 cut(s)	259
MvaI	CCWGG	2 cut(s)	591, 716
MwoI	GCNNNNNNNGC	1 cut(s)	109
NcoI	CCATGG	1 cut(s)	405
NdeI	CATATG	1 cut(s)	388
NdeII	GATC	4 cut(s)	52, 121, 188, 514
NlaIII	CATG	5 cut(s)	16, 70, 76, 325, 409
NlaIV	GGNNCC	1 cut(s)	342
NmuCI	GTSAC	1 cut(s)	131
NspI	RCATGY	1 cut(s)	16
OliI	CACNNNNGTG	1 cut(s)	129
PaqCI	CACCTGC	1 cut(s)	35
PceI	AGGCCT	1 cut(s)	763
PctI	GAATGC	1 cut(s)	259
PfeI	GAWTC	1 cut(s)	470
PkrI	GCNGC	6 cut(s)	111, 152, 412, 442, 450, 532
PleI	GAGTC	1 cut(s)	128
PpsI	GAGTC	1 cut(s)	128
Psp6I	CCWGG	2 cut(s)	589, 714
PspFI	CCCAGC	1 cut(s)	683
PspGI	CCWGG	2 cut(s)	589, 714
PspN4I	GGNNCC	1 cut(s)	342
PstI	CTGCAG	1 cut(s)	579
PstNI	CAGNNNCTG	1 cut(s)	793
PsuI	RGATCY	1 cut(s)	514
RseI	CAYNNNNRTG	2 cut(s)	71, 129
SaqAI	TTAA	1 cut(s)	501
SatI	GCNGC	6 cut(s)	110, 151, 411, 441, 449, 531
Sau3AI	GATC	4 cut(s)	52, 121, 188, 514
SchI	GAGTC	1 cut(s)	128
ScrFI	CCNGG	2 cut(s)	591, 716
SduI	GDGCHC	1 cut(s)	345
SetI	ASST	4 cut(s)	49, 287, 616, 634
SfaNI	GCATC	2 cut(s)	78, 780
SfcI	CTRYAG	1 cut(s)	575
SmiMI	CAYNNNNRTG	2 cut(s)	71, 129
Sse9I	AATT	5 cut(s)	333, 435, 453, 570, 728
SseBI	AGGCCT	1 cut(s)	763
SsiI	CCGC	2 cut(s)	440, 594
SspMI	CTAG	2 cut(s)	369, 623
StuI	AGGCCT	1 cut(s)	763
StyD4I	CCNGG	2 cut(s)	589, 714
StyI	CCWWGG	2 cut(s)	353, 405
TaiI	ACGT	1 cut(s)	287
TaqII	GACCGA	1 cut(s)	712
TasI	AATT	5 cut(s)	333, 435, 453, 570, 728
TauI	GCSGC	1 cut(s)	443
TfiI	GAWTC	1 cut(s)	470
Tru1I	TTAA	1 cut(s)	501
Tru9I	TTAA	1 cut(s)	501
TseFI	GTSAC	1 cut(s)	131
TseI	GCWGC	5 cut(s)	109, 150, 410, 448, 530
Tsp45I	GTSAC	1 cut(s)	131
TspDTI	ATGAA	3 cut(s)	310, 375, 642
XapI	RAATTY	2 cut(s)	333, 570
XceI	RCATGY	1 cut(s)	16
XspI	CTAG	2 cut(s)	369, 623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.