Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0004140

Physical Location & Seq

Genomic Coordinates Reverse (-)

15210782 .. 15211606

Gene Structure 825 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1173400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGATGTTGACATGCTCAAATCATTATCATCGTCATCAGCAGCAGGAGGTGATCATCATCATCATCACATGGACATGATGACAATGATGATGCAAATGCAACAACAGCAGCACTCTCCCGATCACTTCTGCAATGACTCTTACCCCAACAACAATAATCCCACATTTCCAGAGATAGATTTTAATTGGGTTTCAAATCCTAACCCCAATAATCTTGAATCCATTTCTCCACTACCAATGTTCCATAACCCAAATCCAAATGCAGTTCCTCAACAACCCACATTGCTAAATCCTGCATTACCCTCCTCTGTTTCCTTCATGGGAAACCCCGTCCAAGAACCCGTAACCCCAAGACTAATTAAGCCTTCTGGTATTAGTCTTACAGGACTAGCAGTCCCATCCAGTACTTCTCCATACGAGAAGAGAAACTCTATGGCTGCAATGAGGGAGATGATATTCAGGATAGCAGCAATGCAGCCCATTCAGATAGACCCGGAGGCGGTGAAGCCGCCGAAGAGGAGGAACGTGAAGATTTCGAAAGACCCACAGAGCGTGGCGGCGAGGCACCGGAGGGAAAGGATAAGTGAGAAGATCAGAATCCTGCAAAGACTTGTTCCTGGTGGGACTAAAATGGACACTGCTTCTATGTTGGATGAGGCCATACATTATGTAAAGTTTTTGAAGAAGCAAGTGCAGACTTTGGAGAGAGCTGGGGCTGATAGACTGGACGGCGTTGGATTCCAAGGGAGTGGCAGTCAGTTGGGTAATGTGAATTACTCTAGTTTTCGGAGTCAGTTGGTGGGTTCTATGCAGATGCTTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

275

Amino Acids

30.55

Weight (kDa)

9.41

Isoelectric Point (pI)

49.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	187 - 228	5.9e-07	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	189 - 232	5.8e-12	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004140)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50330 AT5G67060 AT5G67060
fragaria_vesca	FvH4_1g16130 FvH4_2g34280
malus_domestica	MD02G1173400.v1.1 MD08G1098800.v1.1 MD15G1081100.v1.1 MD15G1284900.v1.1
prunus_persica	Prupe.1G434000_v2.0.a1 Prupe.7G132300_v2.0.a1
pyrus_communis	pycom15g07560 pycom15g07580
rosa_chinensis	RchiOBHm_Chr2g0105811 RchiOBHm_Chr6g0308101
rosa_laevigata	RLG00000010668 RLG00000017461
rosa_multiflora	Rmu_sc0005706.1_g000001 Rmu_sc0010497.1_g000002
rosa_roxburghii	Rroxscaffold_2G00137880 Rroxscaffold_7G00160540
rosa_rugosa	Rorug02G0130500 Rorug06G0364000
rosa_samantha	Rh2AG181700 Rh2BG191300 Rh2CG186000 Rh2DG187900 Rh6AG472700 Rh6BG483900 Rh6CG488800 Rh6DG475100
rosa_wichuraiana	Rw2G014230 Rw6G041250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	564
AciI	CCGC	3 cut(s)	500, 509, 557
AfaI	GTAC	1 cut(s)	406
AfiI	CCNNNNNNNGG	1 cut(s)	499
AgsI	TTSAA	3 cut(s)	195, 218, 682
AhdI	GACNNNNNGTC	1 cut(s)	392
AjnI	CCWGG	1 cut(s)	616
AluBI	AGCT	1 cut(s)	710
AluI	AGCT	1 cut(s)	710
AoxI	GGCC	1 cut(s)	657
ApeKI	GCWGC	5 cut(s)	41, 109, 437, 467, 475
AsuC2I	CCSGG	1 cut(s)	494
AsuHPI	GGTGA	2 cut(s)	62, 514
AsuII	TTCGAA	1 cut(s)	536
BanI	GGYRCC	1 cut(s)	564
BbvI	GCAGC	5 cut(s)	53, 121, 424, 479, 487
BccI	CCATC	1 cut(s)	406
BceAI	ACGGC	1 cut(s)	745
BciT130I	CCWGG	1 cut(s)	618
BclI	TGATCA	1 cut(s)	52
BcnI	CCSGG	1 cut(s)	494
BfaI	CTAG	2 cut(s)	389, 780
BisI	GCNGC	7 cut(s)	42, 110, 438, 468, 476, 509, 558
BlsI	GCNGC	7 cut(s)	43, 111, 439, 469, 477, 510, 559
BmcAI	AGTACT	1 cut(s)	406
Bme1390I	CCNGG	2 cut(s)	494, 618
BmeRI	GACNNNNNGTC	1 cut(s)	392
BmiI	GGNNCC	1 cut(s)	566
BmrFI	CCNGG	2 cut(s)	494, 618
BmsI	GCATC	2 cut(s)	81, 804
Bpu14I	TTCGAA	1 cut(s)	536
BpuMI	CCSGG	1 cut(s)	494
BsaBI	GATNNNNATC	2 cut(s)	57, 596
BsaJI	CCNNGG	1 cut(s)	742
BsaWI	WCCGGW	1 cut(s)	567
BsaXI	ACNNNNNCTCC	2 cut(s)	739, 769
Bsc4I	CCNNNNNNNGG	1 cut(s)	499
Bse1I	ACTGG	2 cut(s)	402, 729
Bse3DI	GCAATG	4 cut(s)	139, 281, 447, 477
Bse8I	GATNNNNATC	2 cut(s)	57, 596
BseBI	CCWGG	1 cut(s)	618
BseDI	CCNNGG	1 cut(s)	742
BseGI	GGATG	3 cut(s)	10, 398, 658
BseJI	GATNNNNATC	2 cut(s)	57, 596
BseLI	CCNNNNNNNGG	1 cut(s)	499
BseMI	GCAATG	4 cut(s)	139, 281, 447, 477
BseNI	ACTGG	2 cut(s)	402, 729
BseRI	GAGGAG	2 cut(s)	295, 532
BseXI	GCAGC	5 cut(s)	53, 121, 424, 479, 487
BseYI	CCCAGC	1 cut(s)	710
BsgI	GTGCAG	1 cut(s)	713
BshFI	GGCC	1 cut(s)	659
BshNI	GGYRCC	1 cut(s)	564
BsiSI	CCGG	2 cut(s)	494, 568
BslFI	GGGAC	2 cut(s)	380, 637
BslI	CCNNNNNNNGG	1 cut(s)	499
BsmFI	GGGAC	2 cut(s)	380, 637
BsnI	GGCC	1 cut(s)	659
Bsp119I	TTCGAA	1 cut(s)	536
Bsp143I	GATC	3 cut(s)	52, 121, 591
BspACI	CCGC	3 cut(s)	500, 509, 557
BspANI	GGCC	1 cut(s)	659
BspLI	GGNNCC	1 cut(s)	566
BspT104I	TTCGAA	1 cut(s)	536
BspT107I	GGYRCC	1 cut(s)	564
BsrDI	GCAATG	4 cut(s)	139, 281, 447, 477
BsrI	ACTGG	2 cut(s)	402, 729
BssECI	CCNNGG	1 cut(s)	742
BssMI	GATC	3 cut(s)	52, 121, 591
BssT1I	CCWWGG	1 cut(s)	742
Bst2UI	CCWGG	1 cut(s)	618
Bst6I	CTCTTC	2 cut(s)	416, 509
BstBI	TTCGAA	1 cut(s)	536
BstDEI	CTNAG	1 cut(s)	818
BstF5I	GGATG	3 cut(s)	10, 398, 658
BstKTI	GATC	3 cut(s)	55, 124, 594
BstMBI	GATC	3 cut(s)	52, 121, 591
BstMWI	GCNNNNNNNGC	1 cut(s)	106
BstNI	CCWGG	1 cut(s)	618
BstNSI	RCATGY	1 cut(s)	16
BstSCI	CCNGG	2 cut(s)	492, 616
BstV1I	GCAGC	5 cut(s)	53, 121, 424, 479, 487
BstXI	CCANNNNNNTGG	1 cut(s)	749
BsuRI	GGCC	1 cut(s)	659
BtsCI	GGATG	3 cut(s)	10, 398, 658
BtsI	GCAGTG	1 cut(s)	636
BtsIMutI	CAGTG	1 cut(s)	636
Csp6I	GTAC	1 cut(s)	405
CviAII	CATG	4 cut(s)	13, 70, 76, 319
CviJI	RGCY	7 cut(s)	364, 437, 478, 508, 659, 710, 716
CviKI_1	RGCY	7 cut(s)	364, 437, 478, 508, 659, 710, 716
CviQI	GTAC	1 cut(s)	405
DdeI	CTNAG	1 cut(s)	818
DpnI	GATC	3 cut(s)	54, 123, 593
DpnII	GATC	3 cut(s)	52, 121, 591
DriI	GACNNNNNGTC	1 cut(s)	392
Eam1104I	CTCTTC	2 cut(s)	416, 509
Eam1105I	GACNNNNNGTC	1 cut(s)	392
EarI	CTCTTC	2 cut(s)	416, 509
Eco130I	CCWWGG	1 cut(s)	742
EcoRII	CCWGG	1 cut(s)	616
EcoT14I	CCWWGG	1 cut(s)	742
ErhI	CCWWGG	1 cut(s)	742
FaeI	CATG	4 cut(s)	16, 73, 79, 322
FaqI	GGGAC	2 cut(s)	380, 637
FatI	CATG	4 cut(s)	12, 69, 75, 318
FbaI	TGATCA	1 cut(s)	52
Fnu4HI	GCNGC	7 cut(s)	42, 110, 438, 468, 476, 509, 558
FokI	GGATG	3 cut(s)	17, 385, 665
Fsp4HI	GCNGC	7 cut(s)	42, 110, 438, 468, 476, 509, 558
FspBI	CTAG	2 cut(s)	389, 780
GluI	GCNGC	7 cut(s)	42, 110, 438, 468, 476, 509, 558
GsaI	CCCAGC	1 cut(s)	714
HaeIII	GGCC	1 cut(s)	659
HapII	CCGG	2 cut(s)	494, 568
Hin1II	CATG	4 cut(s)	16, 73, 79, 322
HincII	GTYRAC	1 cut(s)	10
HindII	GTYRAC	1 cut(s)	10
HinfI	GANTC	5 cut(s)	137, 218, 597, 738, 790
HpaII	CCGG	2 cut(s)	494, 568
HphI	GGTGA	2 cut(s)	62, 514
Hpy166II	GTNNAC	1 cut(s)	10
Hpy188I	TCNGA	3 cut(s)	486, 596, 789
Hpy188III	TCNNGA	4 cut(s)	119, 170, 215, 460
Hpy8I	GTNNAC	1 cut(s)	10
HpyAV	CCTTC	2 cut(s)	325, 375
HpyCH4IV	ACGT	1 cut(s)	525
HpyF10VI	GCNNNNNNNGC	1 cut(s)	106
HpyF3I	CTNAG	1 cut(s)	818
HpySE526I	ACGT	1 cut(s)	525
Hsp92II	CATG	4 cut(s)	16, 73, 79, 322
Ksp22I	TGATCA	1 cut(s)	52
Kzo9I	GATC	3 cut(s)	52, 121, 591
Lsp1109I	GCAGC	5 cut(s)	53, 121, 424, 479, 487
LweI	GCATC	2 cut(s)	81, 804
MaeI	CTAG	2 cut(s)	389, 780
MaeII	ACGT	1 cut(s)	525
MaeIII	GTNAC	1 cut(s)	343
MalI	GATC	3 cut(s)	54, 123, 593
MboI	GATC	3 cut(s)	52, 121, 591
MboII	GAAGA	5 cut(s)	433, 526, 541, 601, 694
MluCI	AATT	3 cut(s)	184, 357, 772
MlyI	GAGTC	2 cut(s)	131, 799
MmeI	TCCRAC	2 cut(s)	630, 715
MseI	TTAA	2 cut(s)	183, 360
MslI	CAYNNNNRTG	1 cut(s)	74
MspI	CCGG	2 cut(s)	494, 568
MspR9I	CCNGG	2 cut(s)	494, 618
MvaI	CCWGG	1 cut(s)	618
MwoI	GCNNNNNNNGC	1 cut(s)	106
NciI	CCSGG	1 cut(s)	494
NdeII	GATC	3 cut(s)	52, 121, 591
NlaIII	CATG	4 cut(s)	16, 73, 79, 322
NlaIV	GGNNCC	1 cut(s)	566
NspI	RCATGY	1 cut(s)	16
NspV	TTCGAA	1 cut(s)	536
PfeI	GAWTC	3 cut(s)	218, 597, 738
PkrI	GCNGC	7 cut(s)	43, 111, 439, 469, 477, 510, 559
PleI	GAGTC	2 cut(s)	131, 798
PpsI	GAGTC	2 cut(s)	131, 798
Psp6I	CCWGG	1 cut(s)	616
PspFI	CCCAGC	1 cut(s)	710
PspGI	CCWGG	1 cut(s)	616
PspN4I	GGNNCC	1 cut(s)	566
RsaI	GTAC	1 cut(s)	406
RsaNI	GTAC	1 cut(s)	405
RseI	CAYNNNNRTG	1 cut(s)	74
SaqAI	TTAA	2 cut(s)	183, 360
SatI	GCNGC	7 cut(s)	42, 110, 438, 468, 476, 509, 558
Sau3AI	GATC	3 cut(s)	52, 121, 591
ScaI	AGTACT	1 cut(s)	406
SchI	GAGTC	2 cut(s)	131, 799
ScrFI	CCNGG	2 cut(s)	494, 618
SetI	ASST	3 cut(s)	52, 528, 712
SfaNI	GCATC	2 cut(s)	81, 804
SfuI	TTCGAA	1 cut(s)	536
SmiMI	CAYNNNNRTG	1 cut(s)	74
Sse9I	AATT	3 cut(s)	184, 357, 772
SsiI	CCGC	3 cut(s)	500, 509, 557
SspMI	CTAG	2 cut(s)	389, 780
StyD4I	CCNGG	2 cut(s)	492, 616
StyI	CCWWGG	1 cut(s)	742
TaiI	ACGT	1 cut(s)	528
TaqI	TCGA	1 cut(s)	536
TasI	AATT	3 cut(s)	184, 357, 772
TatI	WGTACW	1 cut(s)	404
TauI	GCSGC	2 cut(s)	511, 560
TfiI	GAWTC	3 cut(s)	218, 597, 738
Tru1I	TTAA	2 cut(s)	183, 360
Tru9I	TTAA	2 cut(s)	183, 360
TscAI	CASTG	1 cut(s)	643
TseI	GCWGC	5 cut(s)	41, 109, 437, 467, 475
TspDTI	ATGAA	1 cut(s)	307
TspRI	CASTG	1 cut(s)	643
XceI	RCATGY	1 cut(s)	16
XspI	CTAG	2 cut(s)	389, 780
ZrmI	AGTACT	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.