Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0004140

Physical Location & Seq

Genomic Coordinates Forward (+)

4665707 .. 4666767

Gene Structure 1061 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g07580.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGCACAATCACACCATTTTCAGTATAAGAGTCAAGACCTCGAATATATACAATTATTCCATGGCCAAGATGACGTTGAAGGTTTTAATCGCTCAAATTCTTGTTTCTCTTCTCGTCCTCCAACTAGTTTATTCTGGTGAAACGGTGACCAAAAACCCTTGCTGGAAAACCTTATCCGTAGTCAAAAATGGGTACGACGTTGTTTCCGACCTGCCGCAGTCCGATCTCAATTTCTCCGCCACCACAACTAGTCCCACTAGTCTCAGTGCCACCATGTCTCATTACACTACTGACCAAAACCCACATAACAATAGTATCCATTCACCAAACTCAAACTCACAATCCTTCCTAAACCTTCCAACAATCCCATCCACCATTTCATTCACCAACACAAACCCTACCGAGCAAACATTGTTTTCAACACCGTCACAAAAACGTGCTTCGATGGCAGCCATGAGGGAGATGATATTCCGGATTGCAGCCATGCAGCCAATCAACATCGACCCGGAATCCGTTAAGCCGCCAAAGAGAAGGAACGTGAAGATTTCTAAGGACCCTCAGAGCGTGGCGGCCCGGCATCGGAGAGAGAGGATTAGTGAGAGGATTAGAATCCTGCAGAGACTTGTCCCGGGCGGGACAAAAATGGACACCGCTTCCATGCTAGATGAGGCCATTCACTATGTCAAGTTTTTGAAGACTCAGGTCCAAACGCTGGAGAGAGCTGCGACCAATAGGCCTACCGGGATTGGATTTCCTGTGGCCATGTCTAGTGGGAGCTACATATCTAACTCTATGGCTAAGGCTTATCAGGCTCCTCCTTCTCATCAGAATGTGCAGCATTTCGGTGTTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

285

Amino Acids

31.55

Weight (kDa)

10.03

Isoelectric Point (pI)

53.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004140)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50330 AT5G67060 AT5G67060
fragaria_vesca	FvH4_1g16130 FvH4_2g34280
malus_domestica	MD02G1173400.v1.1 MD08G1098800.v1.1 MD15G1081100.v1.1 MD15G1284900.v1.1
prunus_persica	Prupe.1G434000_v2.0.a1 Prupe.7G132300_v2.0.a1
pyrus_communis	pycom15g07560 pycom15g07580
rosa_chinensis	RchiOBHm_Chr2g0105811 RchiOBHm_Chr6g0308101
rosa_laevigata	RLG00000010668 RLG00000017461
rosa_multiflora	Rmu_sc0005706.1_g000001 Rmu_sc0010497.1_g000002
rosa_roxburghii	Rroxscaffold_2G00137880 Rroxscaffold_7G00160540
rosa_rugosa	Rorug02G0130500 Rorug06G0364000
rosa_samantha	Rh2AG181700 Rh2BG191300 Rh2CG186000 Rh2DG187900 Rh6AG472700 Rh6BG483900 Rh6CG488800 Rh6DG475100
rosa_wichuraiana	Rw2G014230 Rw6G041250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	219
AccB7I	CCANNNNNTGG	1 cut(s)	712
AccIII	TCCGGA	1 cut(s)	471
AciI	CCGC	6 cut(s)	215, 237, 521, 569, 633, 651
AcoI	YGGCCR	2 cut(s)	63, 759
AcsI	RAATTY	1 cut(s)	96
AfaI	GTAC	1 cut(s)	194
AfiI	CCNNNNNNNGG	2 cut(s)	579, 712
AgsI	TTSAA	3 cut(s)	79, 420, 694
AhlI	ACTAGT	3 cut(s)	124, 248, 257
AluBI	AGCT	2 cut(s)	722, 777
AluI	AGCT	2 cut(s)	722, 777
Alw26I	GTCTC	3 cut(s)	266, 282, 613
Ama87I	CYCGRG	1 cut(s)	628
Aor13HI	TCCGGA	1 cut(s)	471
AoxI	GGCC	5 cut(s)	63, 570, 669, 734, 759
ApeKI	GCWGC	5 cut(s)	449, 479, 487, 722, 835
ApoI	RAATTY	1 cut(s)	96
AspS9I	GGNCC	3 cut(s)	553, 571, 703
AsuC2I	CCSGG	5 cut(s)	506, 574, 629, 630, 742
AsuHPI	GGTGA	4 cut(s)	149, 157, 315, 376
AvaI	CYCGRG	1 cut(s)	628
AvaII	GGWCC	2 cut(s)	553, 703
BaeI	ACNNNNGTAYC	2 cut(s)	298, 331
BalI	TGGCCA	2 cut(s)	65, 761
BbsI	GAAGAC	1 cut(s)	701
BbvI	GCAGC	5 cut(s)	461, 491, 499, 709, 847
BccI	CCATC	2 cut(s)	376, 439
BciVI	GTATCC	1 cut(s)	326
BcnI	CCSGG	5 cut(s)	506, 574, 629, 630, 742
BcoDI	GTCTC	3 cut(s)	266, 282, 613
BcuI	ACTAGT	3 cut(s)	124, 248, 257
BfaI	CTAG	5 cut(s)	125, 249, 258, 662, 768
BfmI	CTRYAG	1 cut(s)	614
BfuAI	ACCTGC	1 cut(s)	219
BfuI	GTATCC	1 cut(s)	326
BisI	GCNGC	8 cut(s)	215, 450, 480, 488, 521, 570, 723, 836
BlsI	GCNGC	8 cut(s)	216, 451, 481, 489, 522, 571, 724, 837
Bme1390I	CCNGG	5 cut(s)	506, 574, 629, 630, 742
Bme18I	GGWCC	2 cut(s)	553, 703
BmeT110I	CYCGRG	1 cut(s)	628
BmgT120I	GGNCC	3 cut(s)	553, 571, 703
BmiI	GGNNCC	2 cut(s)	555, 813
BmrFI	CCNGG	5 cut(s)	506, 574, 629, 630, 742
BmsI	GCATC	1 cut(s)	586
BoxI	GACNNNNGTC	1 cut(s)	701
BpiI	GAAGAC	1 cut(s)	701
BpmI	CTGGAG	1 cut(s)	734
Bpu10I	CCTNAGC	1 cut(s)	798
BpuMI	CCSGG	5 cut(s)	506, 574, 629, 630, 742
BsaBI	GATNNNNATC	1 cut(s)	608
BsaJI	CCNNGG	2 cut(s)	60, 628
BsaWI	WCCGGW	1 cut(s)	471
Bsc4I	CCNNNNNNNGG	2 cut(s)	579, 712
Bse8I	GATNNNNATC	1 cut(s)	608
BseAI	TCCGGA	1 cut(s)	471
BseDI	CCNNGG	2 cut(s)	60, 628
BseGI	GGATG	1 cut(s)	368
BseJI	GATNNNNATC	1 cut(s)	608
BseLI	CCNNNNNNNGG	2 cut(s)	579, 712
BseMII	CTCAG	3 cut(s)	277, 572, 713
BseRI	GAGGAG	1 cut(s)	804
BseXI	GCAGC	5 cut(s)	461, 491, 499, 709, 847
BsgI	GTGCAG	1 cut(s)	854
BshFI	GGCC	5 cut(s)	65, 572, 671, 736, 761
BsiHKCI	CYCGRG	1 cut(s)	628
BsiSI	CCGG	5 cut(s)	472, 506, 574, 629, 741
BslFI	GGGAC	3 cut(s)	237, 611, 649
BslI	CCNNNNNNNGG	2 cut(s)	579, 712
BsmAI	GTCTC	3 cut(s)	266, 282, 613
BsmFI	GGGAC	3 cut(s)	237, 611, 649
BsnI	GGCC	5 cut(s)	65, 572, 671, 736, 761
BsoBI	CYCGRG	1 cut(s)	628
Bsp13I	TCCGGA	1 cut(s)	471
Bsp143I	GATC	1 cut(s)	223
Bsp19I	CCATGG	1 cut(s)	60
BspACI	CCGC	6 cut(s)	215, 237, 521, 569, 633, 651
BspANI	GGCC	5 cut(s)	65, 572, 671, 736, 761
BspCNI	CTCAG	3 cut(s)	276, 571, 712
BspEI	TCCGGA	1 cut(s)	471
BspLI	GGNNCC	2 cut(s)	555, 813
BspMAI	CTGCAG	1 cut(s)	618
BspMI	ACCTGC	1 cut(s)	219
BssECI	CCNNGG	2 cut(s)	60, 628
BssMI	GATC	1 cut(s)	223
BssT1I	CCWWGG	1 cut(s)	60
Bst4CI	ACNGT	2 cut(s)	145, 426
Bst6I	CTCTTC	1 cut(s)	114
BstDEI	CTNAG	5 cut(s)	263, 549, 558, 699, 798
BstDSI	CCRYGG	1 cut(s)	60
BstEII	GGTNACC	1 cut(s)	145
BstF5I	GGATG	1 cut(s)	368
BstKTI	GATC	1 cut(s)	226
BstMAI	GTCTC	3 cut(s)	266, 282, 613
BstMBI	GATC	1 cut(s)	223
BstMWI	GCNNNNNNNGC	2 cut(s)	446, 809
BstPAI	GACNNNNGTC	1 cut(s)	701
BstPI	GGTNACC	1 cut(s)	145
BstSCI	CCNGG	5 cut(s)	504, 572, 627, 628, 740
BstSFI	CTRYAG	1 cut(s)	614
BstV1I	GCAGC	5 cut(s)	461, 491, 499, 709, 847
BstV2I	GAAGAC	1 cut(s)	701
BsuI	GTATCC	1 cut(s)	326
BsuRI	GGCC	5 cut(s)	65, 572, 671, 736, 761
BtgI	CCRYGG	1 cut(s)	60
BtsCI	GGATG	1 cut(s)	368
BtsIMutI	CAGTG	1 cut(s)	271
BveI	ACCTGC	1 cut(s)	219
Cfr13I	GGNCC	3 cut(s)	553, 571, 703
Cfr9I	CCCGGG	1 cut(s)	628
Csp6I	GTAC	1 cut(s)	193
CviAII	CATG	6 cut(s)	61, 274, 454, 484, 658, 763
CviQI	GTAC	1 cut(s)	193
DdeI	CTNAG	5 cut(s)	263, 549, 558, 699, 798
DpnI	GATC	1 cut(s)	225
DpnII	GATC	1 cut(s)	223
EaeI	YGGCCR	2 cut(s)	63, 759
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
EciI	GGCGGA	1 cut(s)	226
Eco130I	CCWWGG	1 cut(s)	60
Eco147I	AGGCCT	1 cut(s)	736
Eco47I	GGWCC	2 cut(s)	553, 703
Eco88I	CYCGRG	1 cut(s)	628
Eco91I	GGTNACC	1 cut(s)	145
EcoO109I	RGGNCCY	1 cut(s)	553
EcoO65I	GGTNACC	1 cut(s)	145
EcoT14I	CCWWGG	1 cut(s)	60
ErhI	CCWWGG	1 cut(s)	60
FaeI	CATG	6 cut(s)	64, 277, 457, 487, 661, 766
FaqI	GGGAC	3 cut(s)	237, 611, 649
FatI	CATG	6 cut(s)	60, 273, 453, 483, 657, 762
FauI	CCCGC	1 cut(s)	626
Fnu4HI	GCNGC	8 cut(s)	215, 450, 480, 488, 521, 570, 723, 836
FokI	GGATG	1 cut(s)	355
Fsp4HI	GCNGC	8 cut(s)	215, 450, 480, 488, 521, 570, 723, 836
FspBI	CTAG	5 cut(s)	125, 249, 258, 662, 768
GluI	GCNGC	8 cut(s)	215, 450, 480, 488, 521, 570, 723, 836
GsuI	CTGGAG	1 cut(s)	734
HaeIII	GGCC	5 cut(s)	65, 572, 671, 736, 761
HapII	CCGG	5 cut(s)	472, 506, 574, 629, 741
Hin1II	CATG	6 cut(s)	64, 277, 457, 487, 661, 766
HinfI	GANTC	4 cut(s)	30, 509, 609, 697
HpaII	CCGG	5 cut(s)	472, 506, 574, 629, 741
HphI	GGTGA	4 cut(s)	149, 157, 315, 376
Hpy188I	TCNGA	5 cut(s)	208, 223, 561, 582, 828
Hpy188III	TCNNGA	2 cut(s)	34, 472
Hpy99I	CGWCG	1 cut(s)	200
HpyAV	CCTTC	5 cut(s)	73, 355, 365, 525, 828
HpyCH4III	ACNGT	2 cut(s)	145, 426
HpyCH4IV	ACGT	4 cut(s)	74, 198, 436, 537
HpyCH4V	TGCA	5 cut(s)	4, 479, 487, 616, 835
HpyF10VI	GCNNNNNNNGC	2 cut(s)	446, 809
HpyF3I	CTNAG	5 cut(s)	263, 549, 558, 699, 798
HpySE526I	ACGT	4 cut(s)	74, 198, 436, 537
Hsp92II	CATG	6 cut(s)	64, 277, 457, 487, 661, 766
Kpn2I	TCCGGA	1 cut(s)	471
Kzo9I	GATC	1 cut(s)	223
LmnI	GCTCC	2 cut(s)	774, 817
Lsp1109I	GCAGC	5 cut(s)	461, 491, 499, 709, 847
LweI	GCATC	1 cut(s)	586
MaeI	CTAG	5 cut(s)	125, 249, 258, 662, 768
MaeII	ACGT	4 cut(s)	74, 198, 436, 537
MaeIII	GTNAC	2 cut(s)	145, 426
MalI	GATC	1 cut(s)	225
MboI	GATC	1 cut(s)	223
MboII	GAAGA	3 cut(s)	101, 553, 706
MlsI	TGGCCA	2 cut(s)	65, 761
MluCI	AATT	3 cut(s)	52, 96, 229
MluNI	TGGCCA	2 cut(s)	65, 761
MlyI	GAGTC	2 cut(s)	39, 691
MmeI	TCCRAC	3 cut(s)	145, 231, 383
MnlI	CCTC	8 cut(s)	49, 128, 450, 567, 582, 594, 661, 825
Mox20I	TGGCCA	2 cut(s)	65, 761
MroI	TCCGGA	1 cut(s)	471
MscI	TGGCCA	2 cut(s)	65, 761
MseI	TTAA	3 cut(s)	86, 516, 853
MslI	CAYNNNNRTG	2 cut(s)	828, 843
Msp20I	TGGCCA	2 cut(s)	65, 761
MspI	CCGG	5 cut(s)	472, 506, 574, 629, 741
MspR9I	CCNGG	5 cut(s)	506, 574, 629, 630, 742
MwoI	GCNNNNNNNGC	2 cut(s)	446, 809
NciI	CCSGG	5 cut(s)	506, 574, 629, 630, 742
NcoI	CCATGG	1 cut(s)	60
NdeII	GATC	1 cut(s)	223
NlaIII	CATG	6 cut(s)	64, 277, 457, 487, 661, 766
NlaIV	GGNNCC	2 cut(s)	555, 813
NmuCI	GTSAC	2 cut(s)	145, 426
PceI	AGGCCT	1 cut(s)	736
PcsI	WCGNNNNNNNCGW	1 cut(s)	204
PfeI	GAWTC	2 cut(s)	509, 609
PflMI	CCANNNNNTGG	1 cut(s)	712
PkrI	GCNGC	8 cut(s)	216, 451, 481, 489, 522, 571, 724, 837
PleI	GAGTC	2 cut(s)	38, 691
PpsI	GAGTC	2 cut(s)	38, 691
PpuMI	RGGWCCY	1 cut(s)	553
PshAI	GACNNNNGTC	1 cut(s)	701
Psp5II	RGGWCCY	1 cut(s)	553
PspEI	GGTNACC	1 cut(s)	145
PspN4I	GGNNCC	2 cut(s)	555, 813
PspPI	GGNCC	3 cut(s)	553, 571, 703
PspPPI	RGGWCCY	1 cut(s)	553
PstI	CTGCAG	1 cut(s)	618
RsaI	GTAC	1 cut(s)	194
RsaNI	GTAC	1 cut(s)	193
RseI	CAYNNNNRTG	2 cut(s)	828, 843
SaqAI	TTAA	3 cut(s)	86, 516, 853
SatI	GCNGC	8 cut(s)	215, 450, 480, 488, 521, 570, 723, 836
Sau3AI	GATC	1 cut(s)	223
Sau96I	GGNCC	3 cut(s)	553, 571, 703
SchI	GAGTC	2 cut(s)	39, 691
ScrFI	CCNGG	5 cut(s)	506, 574, 629, 630, 742
SfaNI	GCATC	1 cut(s)	586
SfcI	CTRYAG	1 cut(s)	614
SinI	GGWCC	2 cut(s)	553, 703
SmaI	CCCGGG	1 cut(s)	630
SmiMI	CAYNNNNRTG	2 cut(s)	828, 843
SpeI	ACTAGT	3 cut(s)	124, 248, 257
Sse9I	AATT	3 cut(s)	52, 96, 229
SseBI	AGGCCT	1 cut(s)	736
SsiI	CCGC	6 cut(s)	215, 237, 521, 569, 633, 651
SspMI	CTAG	5 cut(s)	125, 249, 258, 662, 768
StuI	AGGCCT	1 cut(s)	736
StyD4I	CCNGG	5 cut(s)	504, 572, 627, 628, 740
StyI	CCWWGG	1 cut(s)	60
TaaI	ACNGT	2 cut(s)	145, 426
TaiI	ACGT	4 cut(s)	77, 201, 439, 540
TaqI	TCGA	3 cut(s)	41, 443, 501
TasI	AATT	3 cut(s)	52, 96, 229
TauI	GCSGC	3 cut(s)	217, 523, 572
TfiI	GAWTC	2 cut(s)	509, 609
Tru1I	TTAA	3 cut(s)	86, 516, 853
Tru9I	TTAA	3 cut(s)	86, 516, 853
TscAI	CASTG	1 cut(s)	271
TseFI	GTSAC	2 cut(s)	145, 426
TseI	GCWGC	5 cut(s)	449, 479, 487, 722, 835
Tsp45I	GTSAC	2 cut(s)	145, 426
TspDTI	ATGAA	1 cut(s)	369
TspGWI	ACGGA	2 cut(s)	166, 502
TspMI	CCCGGG	1 cut(s)	628
TspRI	CASTG	1 cut(s)	271
Van91I	CCANNNNNTGG	1 cut(s)	712
VpaK11BI	GGWCC	2 cut(s)	553, 703
XapI	RAATTY	1 cut(s)	96
XmaI	CCCGGG	1 cut(s)	628
XspI	CTAG	5 cut(s)	125, 249, 258, 662, 768

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.