Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0004140

Physical Location & Seq

Genomic Coordinates Reverse (-)

25905204 .. 25906108

Gene Structure 905 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1284900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGATGTTGACATGCTCAAATCATCATCATCATCAGCAGGTGATCATCATCATCACATGGACATGATGACGATGATGATGCAAATGCAAAAACAGCAGCACTCTCCTGATCAGTTCTGCAGTGACTCTTACCCTAACAACAACAACAATCCCACATTTCCAGAGATAGATTTTAATTGGGTTTCAAATCCAAACCCAAATGACCATGAATCCATTTCTCCAGTACCAATTTTCCATAATCCAAATGCAGTTCCTCCACAACCAACATTGCTAAATCCTGCATTACCCTCCTCTGTTTCCTTCATGGGAAACCCAATCCAAGAACCCTTAACTCCAAGACTAAGTAAGCCTTCTGGTATTAGTCCTACAGGACTATCAGTCCTATCCAGTACTTCATACGAGAAGAGAAACTCCATGGCTGCAATGAGGGAGATGATCTTCAGGATTGCAGCAATGCAGCCCATTCAGATAGACCCGGAGGCGGTGAAGCCGCCGAAGAGGAGGAACGTGAAGATTTCGAAAGACCCACAGAGTGTGGCGGCGAGGCACCGGAGGGAGAGGATAAGCGAGAAGATCAGAATCCTGCAGAGACTTGTTCCTGGTGGGACTAAAATGGACACTGCTTCTATGTTGGACGAGGCCATACATTATGTGAAGTTTTTGAAGAAGCAAGTGCAGACTCTGGAGAGAGCTGGGGCTGATAGACCAGTCGGCCTTGGATTCCAAGGGAGTGGCAGTCAGTTGGAGATTGTTTCTGAGGGGAATGTGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

258

Amino Acids

28.59

Weight (kDa)

7.93

Isoelectric Point (pI)

49.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	181 - 222	5.3e-07	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	183 - 226	5.2e-12	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004140)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50330 AT5G67060 AT5G67060
fragaria_vesca	FvH4_1g16130 FvH4_2g34280
malus_domestica	MD02G1173400.v1.1 MD08G1098800.v1.1 MD15G1081100.v1.1 MD15G1284900.v1.1
prunus_persica	Prupe.1G434000_v2.0.a1 Prupe.7G132300_v2.0.a1
pyrus_communis	pycom15g07560 pycom15g07580
rosa_chinensis	RchiOBHm_Chr2g0105811 RchiOBHm_Chr6g0308101
rosa_laevigata	RLG00000010668 RLG00000017461
rosa_multiflora	Rmu_sc0005706.1_g000001 Rmu_sc0010497.1_g000002
rosa_roxburghii	Rroxscaffold_2G00137880 Rroxscaffold_7G00160540
rosa_rugosa	Rorug02G0130500 Rorug06G0364000
rosa_samantha	Rh2AG181700 Rh2BG191300 Rh2CG186000 Rh2DG187900 Rh6AG472700 Rh6BG483900 Rh6CG488800 Rh6DG475100
rosa_wichuraiana	Rw2G014230 Rw6G041250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	29
Acc36I	ACCTGC	1 cut(s)	29
AccB1I	GGYRCC	1 cut(s)	546
AciI	CCGC	3 cut(s)	482, 491, 539
AcuI	CTGAAG	1 cut(s)	424
AdeI	CACNNNGTG	1 cut(s)	533
AfaI	GTAC	2 cut(s)	225, 391
AfiI	CCNNNNNNNGG	1 cut(s)	481
AgsI	TTSAA	2 cut(s)	186, 664
AhdI	GACNNNNNGTC	1 cut(s)	377
AjnI	CCWGG	1 cut(s)	598
AluBI	AGCT	1 cut(s)	692
AluI	AGCT	1 cut(s)	692
Alw26I	GTCTC	1 cut(s)	583
AlwNI	CAGNNNCTG	1 cut(s)	682
AoxI	GGCC	2 cut(s)	639, 712
ApeKI	GCWGC	4 cut(s)	97, 419, 449, 457
AsuC2I	CCSGG	1 cut(s)	476
AsuHPI	GGTGA	2 cut(s)	53, 496
AsuII	TTCGAA	1 cut(s)	518
BanI	GGYRCC	1 cut(s)	546
BbvI	GCAGC	4 cut(s)	109, 406, 461, 469
BcgI	CGANNNNNNTGC	2 cut(s)	61, 95
BciT130I	CCWGG	1 cut(s)	600
BclI	TGATCA	2 cut(s)	43, 109
BcnI	CCSGG	1 cut(s)	476
BcoDI	GTCTC	1 cut(s)	583
BfmI	CTRYAG	3 cut(s)	118, 366, 584
BfuAI	ACCTGC	1 cut(s)	29
BisI	GCNGC	6 cut(s)	98, 420, 450, 458, 491, 540
BlsI	GCNGC	6 cut(s)	99, 421, 451, 459, 492, 541
BmcAI	AGTACT	1 cut(s)	391
Bme1390I	CCNGG	2 cut(s)	476, 600
BmeRI	GACNNNNNGTC	1 cut(s)	377
BmiI	GGNNCC	1 cut(s)	548
BmrFI	CCNGG	2 cut(s)	476, 600
BmsI	GCATC	1 cut(s)	69
BpmI	CTGGAG	2 cut(s)	204, 704
Bpu14I	TTCGAA	1 cut(s)	518
BpuMI	CCSGG	1 cut(s)	476
BsaBI	GATNNNNATC	2 cut(s)	48, 578
BsaJI	CCNNGG	3 cut(s)	414, 715, 724
BsaWI	WCCGGW	1 cut(s)	549
BsaXI	ACNNNNNCTCC	2 cut(s)	721, 751
Bsc4I	CCNNNNNNNGG	1 cut(s)	481
Bse1I	ACTGG	3 cut(s)	221, 387, 707
Bse3DI	GCAATG	3 cut(s)	266, 429, 459
Bse8I	GATNNNNATC	2 cut(s)	48, 578
BseBI	CCWGG	1 cut(s)	600
BseDI	CCNNGG	3 cut(s)	414, 715, 724
BseGI	GGATG	1 cut(s)	10
BseJI	GATNNNNATC	2 cut(s)	48, 578
BseLI	CCNNNNNNNGG	1 cut(s)	481
BseMI	GCAATG	3 cut(s)	266, 429, 459
BseMII	CTCAG	1 cut(s)	747
BseNI	ACTGG	3 cut(s)	221, 387, 707
BseRI	GAGGAG	2 cut(s)	280, 514
BseXI	GCAGC	4 cut(s)	109, 406, 461, 469
BseYI	CCCAGC	1 cut(s)	692
BsgI	GTGCAG	1 cut(s)	695
BshFI	GGCC	2 cut(s)	641, 714
BshNI	GGYRCC	1 cut(s)	546
BsiSI	CCGG	2 cut(s)	476, 550
BslFI	GGGAC	1 cut(s)	619
BslI	CCNNNNNNNGG	1 cut(s)	481
BsmAI	GTCTC	1 cut(s)	583
BsmFI	GGGAC	1 cut(s)	619
BsnI	GGCC	2 cut(s)	641, 714
Bsp119I	TTCGAA	1 cut(s)	518
Bsp143I	GATC	4 cut(s)	43, 109, 435, 573
Bsp19I	CCATGG	1 cut(s)	414
BspACI	CCGC	3 cut(s)	482, 491, 539
BspANI	GGCC	2 cut(s)	641, 714
BspCNI	CTCAG	1 cut(s)	748
BspLI	GGNNCC	1 cut(s)	548
BspMAI	CTGCAG	2 cut(s)	122, 588
BspMI	ACCTGC	1 cut(s)	29
BspT104I	TTCGAA	1 cut(s)	518
BspT107I	GGYRCC	1 cut(s)	546
BsrDI	GCAATG	3 cut(s)	266, 429, 459
BsrI	ACTGG	3 cut(s)	221, 387, 707
BssECI	CCNNGG	3 cut(s)	414, 715, 724
BssMI	GATC	4 cut(s)	43, 109, 435, 573
BssT1I	CCWWGG	3 cut(s)	414, 715, 724
Bst2UI	CCWGG	1 cut(s)	600
Bst6I	CTCTTC	2 cut(s)	398, 491
BstBI	TTCGAA	1 cut(s)	518
BstDEI	CTNAG	2 cut(s)	341, 756
BstDSI	CCRYGG	1 cut(s)	414
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	4 cut(s)	46, 112, 438, 576
BstMAI	GTCTC	1 cut(s)	583
BstMBI	GATC	4 cut(s)	43, 109, 435, 573
BstMWI	GCNNNNNNNGC	1 cut(s)	94
BstNI	CCWGG	1 cut(s)	600
BstNSI	RCATGY	1 cut(s)	16
BstSCI	CCNGG	2 cut(s)	474, 598
BstSFI	CTRYAG	3 cut(s)	118, 366, 584
BstV1I	GCAGC	4 cut(s)	109, 406, 461, 469
BstXI	CCANNNNNNTGG	1 cut(s)	731
BsuRI	GGCC	2 cut(s)	641, 714
BtgI	CCRYGG	1 cut(s)	414
BtsCI	GGATG	1 cut(s)	10
BtsI	GCAGTG	2 cut(s)	127, 618
BtsIMutI	CAGTG	2 cut(s)	127, 618
BveI	ACCTGC	1 cut(s)	29
CaiI	CAGNNNCTG	1 cut(s)	682
Csp6I	GTAC	2 cut(s)	224, 390
CviAII	CATG	6 cut(s)	13, 58, 64, 206, 304, 415
CviJI	RGCY	8 cut(s)	349, 419, 460, 490, 641, 692, 698, 714
CviKI_1	RGCY	8 cut(s)	349, 419, 460, 490, 641, 692, 698, 714
CviQI	GTAC	2 cut(s)	224, 390
DdeI	CTNAG	2 cut(s)	341, 756
DpnI	GATC	4 cut(s)	45, 111, 437, 575
DpnII	GATC	4 cut(s)	43, 109, 435, 573
DraIII	CACNNNGTG	1 cut(s)	533
DriI	GACNNNNNGTC	1 cut(s)	377
Eam1104I	CTCTTC	2 cut(s)	398, 491
Eam1105I	GACNNNNNGTC	1 cut(s)	377
EarI	CTCTTC	2 cut(s)	398, 491
Eco130I	CCWWGG	3 cut(s)	414, 715, 724
Eco57I	CTGAAG	1 cut(s)	424
EcoRII	CCWGG	1 cut(s)	598
EcoT14I	CCWWGG	3 cut(s)	414, 715, 724
ErhI	CCWWGG	3 cut(s)	414, 715, 724
FaeI	CATG	6 cut(s)	16, 61, 67, 209, 307, 418
FalI	AAGNNNNNCTT	2 cut(s)	334, 366
FaqI	GGGAC	1 cut(s)	619
FatI	CATG	6 cut(s)	12, 57, 63, 205, 303, 414
FbaI	TGATCA	2 cut(s)	43, 109
Fnu4HI	GCNGC	6 cut(s)	98, 420, 450, 458, 491, 540
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	6 cut(s)	98, 420, 450, 458, 491, 540
GluI	GCNGC	6 cut(s)	98, 420, 450, 458, 491, 540
GsaI	CCCAGC	1 cut(s)	696
GsuI	CTGGAG	2 cut(s)	204, 704
HaeIII	GGCC	2 cut(s)	641, 714
HapII	CCGG	2 cut(s)	476, 550
Hin1II	CATG	6 cut(s)	16, 61, 67, 209, 307, 418
HincII	GTYRAC	1 cut(s)	10
HindII	GTYRAC	1 cut(s)	10
HinfI	GANTC	5 cut(s)	125, 209, 579, 679, 720
HpaII	CCGG	2 cut(s)	476, 550
HphI	GGTGA	2 cut(s)	53, 496
Hpy166II	GTNNAC	1 cut(s)	10
Hpy188I	TCNGA	3 cut(s)	468, 578, 757
Hpy188III	TCNNGA	4 cut(s)	107, 161, 442, 683
Hpy8I	GTNNAC	1 cut(s)	10
HpyAV	CCTTC	2 cut(s)	310, 360
HpyCH4IV	ACGT	1 cut(s)	507
HpyF10VI	GCNNNNNNNGC	1 cut(s)	94
HpyF3I	CTNAG	2 cut(s)	341, 756
HpySE526I	ACGT	1 cut(s)	507
Hsp92II	CATG	6 cut(s)	16, 61, 67, 209, 307, 418
Ksp22I	TGATCA	2 cut(s)	43, 109
Kzo9I	GATC	4 cut(s)	43, 109, 435, 573
Lsp1109I	GCAGC	4 cut(s)	109, 406, 461, 469
LweI	GCATC	1 cut(s)	69
MaeII	ACGT	1 cut(s)	507
MaeIII	GTNAC	1 cut(s)	122
MalI	GATC	4 cut(s)	45, 111, 437, 575
MboI	GATC	4 cut(s)	43, 109, 435, 573
MboII	GAAGA	6 cut(s)	415, 430, 508, 523, 583, 676
MluCI	AATT	2 cut(s)	175, 228
MlyI	GAGTC	2 cut(s)	119, 673
MmeI	TCCRAC	2 cut(s)	612, 723
MseI	TTAA	2 cut(s)	174, 329
MslI	CAYNNNNRTG	1 cut(s)	62
MspI	CCGG	2 cut(s)	476, 550
MspR9I	CCNGG	2 cut(s)	476, 600
MvaI	CCWGG	1 cut(s)	600
MwoI	GCNNNNNNNGC	1 cut(s)	94
NciI	CCSGG	1 cut(s)	476
NcoI	CCATGG	1 cut(s)	414
NdeII	GATC	4 cut(s)	43, 109, 435, 573
NlaIII	CATG	6 cut(s)	16, 61, 67, 209, 307, 418
NlaIV	GGNNCC	1 cut(s)	548
NmuCI	GTSAC	1 cut(s)	122
NspI	RCATGY	1 cut(s)	16
NspV	TTCGAA	1 cut(s)	518
PaqCI	CACCTGC	1 cut(s)	29
PfeI	GAWTC	3 cut(s)	209, 579, 720
PkrI	GCNGC	6 cut(s)	99, 421, 451, 459, 492, 541
PleI	GAGTC	2 cut(s)	119, 673
PpsI	GAGTC	2 cut(s)	119, 673
Psp6I	CCWGG	1 cut(s)	598
PspFI	CCCAGC	1 cut(s)	692
PspGI	CCWGG	1 cut(s)	598
PspN4I	GGNNCC	1 cut(s)	548
PstI	CTGCAG	2 cut(s)	122, 588
PstNI	CAGNNNCTG	1 cut(s)	682
RsaI	GTAC	2 cut(s)	225, 391
RsaNI	GTAC	2 cut(s)	224, 390
RseI	CAYNNNNRTG	1 cut(s)	62
SaqAI	TTAA	2 cut(s)	174, 329
SatI	GCNGC	6 cut(s)	98, 420, 450, 458, 491, 540
Sau3AI	GATC	4 cut(s)	43, 109, 435, 573
ScaI	AGTACT	1 cut(s)	391
SchI	GAGTC	2 cut(s)	119, 673
ScrFI	CCNGG	2 cut(s)	476, 600
SetI	ASST	3 cut(s)	43, 510, 694
SfaNI	GCATC	1 cut(s)	69
SfcI	CTRYAG	3 cut(s)	118, 366, 584
SfuI	TTCGAA	1 cut(s)	518
SmiMI	CAYNNNNRTG	1 cut(s)	62
Sse9I	AATT	2 cut(s)	175, 228
SsiI	CCGC	3 cut(s)	482, 491, 539
StyD4I	CCNGG	2 cut(s)	474, 598
StyI	CCWWGG	3 cut(s)	414, 715, 724
TaiI	ACGT	1 cut(s)	510
TaqI	TCGA	1 cut(s)	518
TasI	AATT	2 cut(s)	175, 228
TatI	WGTACW	1 cut(s)	389
TauI	GCSGC	2 cut(s)	493, 542
TfiI	GAWTC	3 cut(s)	209, 579, 720
Tru1I	TTAA	2 cut(s)	174, 329
Tru9I	TTAA	2 cut(s)	174, 329
TscAI	CASTG	2 cut(s)	127, 625
TseFI	GTSAC	1 cut(s)	122
TseI	GCWGC	4 cut(s)	97, 419, 449, 457
Tsp45I	GTSAC	1 cut(s)	122
TspDTI	ATGAA	3 cut(s)	222, 292, 384
TspRI	CASTG	2 cut(s)	127, 625
XceI	RCATGY	1 cut(s)	16
ZrmI	AGTACT	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.