Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001460

Physical Location & Seq

Genomic Coordinates Forward (+)

3011177 .. 3013992

Gene Structure 2816 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g05700.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGACCGCCGTAGCCAACGCCGGGTACCGGGCCATTGCTCCCGATTTCCGCGGGTACGGACTCTCCGACCCGCCACCCGAACCGGAGAAGACCACCTTCCACGACCTCATCGATGACCTCATTGGAATTCTCGATGCTCTAGCCATTCCCAAGGTTTTCCTCATTAGAAAAGATTTTGGAGGCCGGCCGGCATACTTGTTTGCCCTTCTGCACCCAGAAAGGGTCTCGGGAGTTGTAAAATTGGGAGTTCCATACACACCACCAACAAGTCGTCCCCAATATGATAAATCCCTCCCTGAAGGTTTTTACATCAACAGATGGCAGATCCTTTTCTCGAGAAGTGAACTACCAATAGCTGCGGAAAACCAGGAGATCATGGACTTGGTGGACTCGTCTACACCTCTTCCCCCATGGTTCACTGAGGAAGATCTTGAAGCATATGGCAAGTTGTACGAAAAATCAGGTTTCCGAACTGCGCTGCGAGTTCCATATAGGGTGATTAAAGAAGATTTGGGCATAACCACTGATCCAACTGTTAAAGTTCCGGTGCTGTGTATAATGGGAAACAAGGATTATTCATGCAAATTTCCAGGGATGGCAGATTACATAAACAGTGGAAAGTTGAAAGAGTTTGTCCCCAATTTGGAGATTGTATCTCTCCCTGAAGGAACTCATTTTGTTCAAGAACAATTGCCTGACCAGGTCAATGAGCTCATCCTCACCTTCCTTGGAAAGCACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0001676 GO:0002532 GO:0002538 GO:0002539 GO:0003008 GO:0003013 GO:0003674 GO:0003824 GO:0004301 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006082 GO:0006629 GO:0006631 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0006954 GO:0007600 GO:0008015 GO:0008150 GO:0008152 GO:0008217 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0016801 GO:0016803 GO:0019233 GO:0019752 GO:0030258 GO:0032501 GO:0032787 GO:0033559 GO:0042577 GO:0042578 GO:0042579 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043651 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045777 GO:0046839 GO:0046872 GO:0050877 GO:0050896 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

248

Amino Acids

27.73

Weight (kDa)

5.21

Isoelectric Point (pI)

42.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	4 - 103	5.1e-14	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	5 - 237	1.9e-07	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001460)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g05700 FvH4_3g04781 FvH4_3g04781 FvH4_3g04781 FvH4_3g04784 FvH4_3g04784 FvH4_3g04790 FvH4_3g04790 FvH4_3g04790
malus_domestica	MD05G1316900.v1.1 MD05G1317400.v1.1 MD10G1297200.v1.1
prunus_persica	Prupe.4G043200_v2.0.a1 Prupe.4G043200_v2.0.a1
pyrus_communis	pycom05g29400 pycom10g25010 pycom10g25060
rosa_chinensis	RchiOBHm_Chr5g0007821 RchiOBHm_Chr5g0007841 RchiOBHm_Chr5g0007871 RchiOBHm_Chr5g0007881
rosa_laevigata	RLG00000031499 RLG00000031500 RLG00000031501
rosa_multiflora	Rmu_co8472583.1_g000001 Rmu_sc0005098.1_g000007 Rmu_sc0005098.1_g000012
rosa_roxburghii	Rroxscaffold_1G00068550 Rroxscaffold_1G00068560 Rroxscaffold_1G00068580
rosa_rugosa	Rorug04G0430600 Rorug04G0430600 Rorug04G0430600 Rorug04G0430600 Rorug04G0430700 Rorug04G0430800
rosa_samantha	Rh5AG059200 Rh5AG059300 Rh5AG059600 Rh5AG059700 Rh5BG056200 Rh5BG056300 Rh5BG056400 Rh5BG056500 Rh5CG066000 Rh5CG066100 Rh5CG066400 Rh5DG055300 Rh5DG055500
rosa_wichuraiana	Rw5G006050 Rw5G006060 Rw5G006070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	24
AccB1I	GGYRCC	1 cut(s)	24
AccI	GTMKAC	1 cut(s)	395
AccII	CGCG	1 cut(s)	51
AciI	CCGC	5 cut(s)	6, 49, 51, 71, 359
AclWI	GGATC	2 cut(s)	319, 521
AcoI	YGGCCR	1 cut(s)	185
AcsI	RAATTY	2 cut(s)	126, 584
AcuI	CTGAAG	2 cut(s)	318, 684
AfaI	GTAC	3 cut(s)	26, 56, 452
AfiI	CCNNNNNNNGG	4 cut(s)	21, 27, 220, 643
AgsI	TTSAA	3 cut(s)	434, 625, 683
AjnI	CCWGG	3 cut(s)	366, 589, 699
AluBI	AGCT	2 cut(s)	356, 712
AluI	AGCT	2 cut(s)	356, 712
Alw21I	GWGCWC	1 cut(s)	714
Alw26I	GTCTC	1 cut(s)	229
AlwI	GGATC	2 cut(s)	319, 521
Ama87I	CYCGRG	2 cut(s)	226, 334
AoxI	GGCC	3 cut(s)	30, 181, 185
ApeKI	GCWGC	2 cut(s)	356, 478
ApoI	RAATTY	2 cut(s)	126, 584
Asp718I	GGTACC	1 cut(s)	24
AspLEI	GCGC	1 cut(s)	478
AspS9I	GGNCC	1 cut(s)	30
AsuC2I	CCSGG	2 cut(s)	22, 29
AsuHPI	GGTGA	2 cut(s)	508, 712
AvaI	CYCGRG	2 cut(s)	226, 334
BanI	GGYRCC	1 cut(s)	24
BanII	GRGCYC	1 cut(s)	714
BbsI	GAAGAC	1 cut(s)	95
Bbv12I	GWGCWC	1 cut(s)	714
BbvI	GCAGC	2 cut(s)	343, 465
BccI	CCATC	2 cut(s)	312, 589
BciT130I	CCWGG	3 cut(s)	368, 591, 701
BcnI	CCSGG	2 cut(s)	22, 29
BcoDI	GTCTC	1 cut(s)	229
BfaI	CTAG	1 cut(s)	140
BglII	AGATCT	1 cut(s)	427
BisI	GCNGC	2 cut(s)	357, 479
BlsI	GCNGC	2 cut(s)	358, 480
Bme1390I	CCNGG	5 cut(s)	22, 29, 368, 591, 701
BmeT110I	CYCGRG	2 cut(s)	226, 334
BmgT120I	GGNCC	1 cut(s)	30
BmiI	GGNNCC	1 cut(s)	26
BmrFI	CCNGG	5 cut(s)	22, 29, 368, 591, 701
BmsI	GCATC	1 cut(s)	124
BpiI	GAAGAC	1 cut(s)	95
BpuMI	CCSGG	2 cut(s)	22, 29
Bsa29I	ATCGAT	1 cut(s)	111
BsaI	GGTCTC	1 cut(s)	229
BsaJI	CCNNGG	5 cut(s)	49, 150, 410, 590, 727
BsaWI	WCCGGW	2 cut(s)	82, 544
BsaXI	ACNNNNNCTCC	2 cut(s)	47, 77
Bsc4I	CCNNNNNNNGG	4 cut(s)	21, 27, 220, 643
Bse118I	RCCGGY	2 cut(s)	183, 187
Bse3DI	GCAATG	1 cut(s)	33
BseBI	CCWGG	3 cut(s)	368, 591, 701
BseCI	ATCGAT	1 cut(s)	111
BseDI	CCNNGG	5 cut(s)	49, 150, 410, 590, 727
BseGI	GGATG	2 cut(s)	600, 714
BseLI	CCNNNNNNNGG	4 cut(s)	21, 27, 220, 643
BseMI	GCAATG	1 cut(s)	33
BseMII	CTCAG	1 cut(s)	411
BseX3I	CGGCCG	1 cut(s)	185
BseXI	GCAGC	2 cut(s)	343, 465
BsgI	GTGCAG	1 cut(s)	194
Bsh1236I	CGCG	1 cut(s)	51
Bsh1285I	CGRYCG	1 cut(s)	188
BshFI	GGCC	3 cut(s)	32, 183, 187
BshNI	GGYRCC	1 cut(s)	24
BshVI	ATCGAT	1 cut(s)	111
BsiEI	CGRYCG	1 cut(s)	188
BsiHKAI	GWGCWC	1 cut(s)	714
BsiHKCI	CYCGRG	2 cut(s)	226, 334
BsiSI	CCGG	6 cut(s)	21, 28, 83, 184, 188, 545
BslFI	GGGAC	2 cut(s)	258, 620
BslI	CCNNNNNNNGG	4 cut(s)	21, 27, 220, 643
BsmAI	GTCTC	1 cut(s)	229
BsmFI	GGGAC	2 cut(s)	258, 620
BsnI	GGCC	3 cut(s)	32, 183, 187
Bso31I	GGTCTC	1 cut(s)	229
BsoBI	CYCGRG	2 cut(s)	226, 334
Bsp1286I	GDGCHC	1 cut(s)	714
Bsp143I	GATC	4 cut(s)	324, 372, 427, 526
Bsp19I	CCATGG	1 cut(s)	410
BspACI	CCGC	5 cut(s)	6, 49, 51, 71, 359
BspANI	GGCC	3 cut(s)	32, 183, 187
BspCNI	CTCAG	1 cut(s)	412
BspDI	ATCGAT	1 cut(s)	111
BspFNI	CGCG	1 cut(s)	51
BspLI	GGNNCC	1 cut(s)	26
BspPI	GGATC	2 cut(s)	319, 521
BspT107I	GGYRCC	1 cut(s)	24
BspTNI	GGTCTC	1 cut(s)	229
BsrDI	GCAATG	1 cut(s)	33
BsrFI	RCCGGY	2 cut(s)	183, 187
BssAI	RCCGGY	2 cut(s)	183, 187
BssECI	CCNNGG	5 cut(s)	49, 150, 410, 590, 727
BssMI	GATC	4 cut(s)	324, 372, 427, 526
BssT1I	CCWWGG	3 cut(s)	150, 410, 727
Bst2UI	CCWGG	3 cut(s)	368, 591, 701
Bst4CI	ACNGT	2 cut(s)	535, 614
Bst6I	CTCTTC	1 cut(s)	408
BstC8I	GCNNGC	2 cut(s)	185, 189
BstDEI	CTNAG	1 cut(s)	420
BstDSI	CCRYGG	2 cut(s)	49, 410
BstF5I	GGATG	2 cut(s)	600, 714
BstFNI	CGCG	1 cut(s)	51
BstHHI	GCGC	1 cut(s)	478
BstKTI	GATC	4 cut(s)	327, 375, 430, 529
BstMAI	GTCTC	1 cut(s)	229
BstMBI	GATC	4 cut(s)	324, 372, 427, 526
BstMCI	CGRYCG	1 cut(s)	188
BstNI	CCWGG	3 cut(s)	368, 591, 701
BstSCI	CCNGG	5 cut(s)	20, 27, 366, 589, 699
BstUI	CGCG	1 cut(s)	51
BstV1I	GCAGC	2 cut(s)	343, 465
BstV2I	GAAGAC	1 cut(s)	95
BstX2I	RGATCY	2 cut(s)	324, 427
BstYI	RGATCY	2 cut(s)	324, 427
BstZI	CGGCCG	1 cut(s)	185
Bsu15I	ATCGAT	1 cut(s)	111
BsuRI	GGCC	3 cut(s)	32, 183, 187
BsuTUI	ATCGAT	1 cut(s)	111
BtgI	CCRYGG	2 cut(s)	49, 410
BtsCI	GGATG	2 cut(s)	600, 714
BtsIMutI	CAGTG	3 cut(s)	417, 522, 619
Cac8I	GCNNGC	2 cut(s)	185, 189
CfoI	GCGC	1 cut(s)	478
Cfr10I	RCCGGY	2 cut(s)	183, 187
Cfr13I	GGNCC	1 cut(s)	30
Cfr42I	CCGCGG	1 cut(s)	52
ClaI	ATCGAT	1 cut(s)	111
CsiI	ACCWGGT	1 cut(s)	699
Csp6I	GTAC	3 cut(s)	25, 55, 451
CviAII	CATG	3 cut(s)	376, 411, 579
CviJI	RGCY	7 cut(s)	14, 32, 143, 183, 187, 356, 712
CviKI_1	RGCY	7 cut(s)	14, 32, 143, 183, 187, 356, 712
CviQI	GTAC	3 cut(s)	25, 55, 451
DdeI	CTNAG	1 cut(s)	420
DpnI	GATC	4 cut(s)	326, 374, 429, 528
DpnII	GATC	4 cut(s)	324, 372, 427, 526
EaeI	YGGCCR	1 cut(s)	185
EagI	CGGCCG	1 cut(s)	185
Eam1104I	CTCTTC	1 cut(s)	408
EarI	CTCTTC	1 cut(s)	408
Ecl136II	GAGCTC	1 cut(s)	712
EclXI	CGGCCG	1 cut(s)	185
Eco130I	CCWWGG	3 cut(s)	150, 410, 727
Eco24I	GRGCYC	1 cut(s)	714
Eco31I	GGTCTC	1 cut(s)	229
Eco52I	CGGCCG	1 cut(s)	185
Eco53kI	GAGCTC	1 cut(s)	712
Eco57I	CTGAAG	2 cut(s)	318, 684
Eco88I	CYCGRG	2 cut(s)	226, 334
EcoICRI	GAGCTC	1 cut(s)	712
EcoRI	GAATTC	1 cut(s)	126
EcoRII	CCWGG	3 cut(s)	366, 589, 699
EcoT14I	CCWWGG	3 cut(s)	150, 410, 727
EcoT38I	GRGCYC	1 cut(s)	714
ErhI	CCWWGG	3 cut(s)	150, 410, 727
FaeI	CATG	3 cut(s)	379, 414, 582
FalI	AAGNNNNNCTT	2 cut(s)	80, 112
FaqI	GGGAC	2 cut(s)	258, 620
FatI	CATG	3 cut(s)	375, 410, 578
FauI	CCCGC	2 cut(s)	44, 78
FauNDI	CATATG	1 cut(s)	439
FblI	GTMKAC	1 cut(s)	395
Fnu4HI	GCNGC	2 cut(s)	357, 479
FokI	GGATG	2 cut(s)	607, 701
FriOI	GRGCYC	1 cut(s)	714
FseI	GGCCGGCC	1 cut(s)	187
Fsp4HI	GCNGC	2 cut(s)	357, 479
FspBI	CTAG	1 cut(s)	140
GlaI	GCGC	1 cut(s)	477
GluI	GCNGC	2 cut(s)	357, 479
HaeIII	GGCC	3 cut(s)	32, 183, 187
HapII	CCGG	6 cut(s)	21, 28, 83, 184, 188, 545
HhaI	GCGC	1 cut(s)	478
Hin1II	CATG	3 cut(s)	379, 414, 582
Hin6I	GCGC	1 cut(s)	476
HinP1I	GCGC	1 cut(s)	476
HinfI	GANTC	2 cut(s)	60, 389
HpaII	CCGG	6 cut(s)	21, 28, 83, 184, 188, 545
HphI	GGTGA	2 cut(s)	508, 712
Hpy166II	GTNNAC	4 cut(s)	344, 388, 396, 417
Hpy188I	TCNGA	2 cut(s)	67, 470
Hpy188III	TCNNGA	7 cut(s)	41, 131, 228, 334, 336, 431, 683
Hpy8I	GTNNAC	4 cut(s)	344, 388, 396, 417
HpyAV	CCTTC	5 cut(s)	106, 215, 293, 659, 733
HpyCH4III	ACNGT	2 cut(s)	535, 614
HpyCH4V	TGCA	2 cut(s)	211, 582
HpyF3I	CTNAG	1 cut(s)	420
Hsp92II	CATG	3 cut(s)	379, 414, 582
HspAI	GCGC	1 cut(s)	476
KpnI	GGTACC	1 cut(s)	28
KroI	GCCGGC	2 cut(s)	183, 187
KroNI	GCCGGC	2 cut(s)	185, 189
KspI	CCGCGG	1 cut(s)	52
Kzo9I	GATC	4 cut(s)	324, 372, 427, 526
LmnI	GCTCC	1 cut(s)	43
Lsp1109I	GCAGC	2 cut(s)	343, 465
LweI	GCATC	1 cut(s)	124
MabI	ACCWGGT	1 cut(s)	699
MaeI	CTAG	1 cut(s)	140
MalI	GATC	4 cut(s)	326, 374, 429, 528
MboI	GATC	4 cut(s)	324, 372, 427, 526
MboII	GAAGA	4 cut(s)	100, 395, 437, 518
MfeI	CAATTG	1 cut(s)	689
MflI	RGATCY	2 cut(s)	324, 427
MhlI	GDGCHC	1 cut(s)	714
MluCI	AATT	5 cut(s)	126, 239, 584, 640, 689
MlyI	GAGTC	2 cut(s)	54, 383
MmeI	TCCRAC	2 cut(s)	90, 554
MnlI	CCTC	8 cut(s)	116, 128, 170, 173, 302, 411, 415, 728
MroNI	GCCGGC	2 cut(s)	183, 187
MseI	TTAA	2 cut(s)	501, 537
MspA1I	CMGCKG	1 cut(s)	51
MspI	CCGG	6 cut(s)	21, 28, 83, 184, 188, 545
MspR9I	CCNGG	5 cut(s)	22, 29, 368, 591, 701
MunI	CAATTG	1 cut(s)	689
MvaI	CCWGG	3 cut(s)	368, 591, 701
MvnI	CGCG	1 cut(s)	51
NaeI	GCCGGC	2 cut(s)	185, 189
NciI	CCSGG	2 cut(s)	22, 29
NcoI	CCATGG	1 cut(s)	410
NdeI	CATATG	1 cut(s)	439
NdeII	GATC	4 cut(s)	324, 372, 427, 526
NgoMIV	GCCGGC	2 cut(s)	183, 187
NlaIII	CATG	3 cut(s)	379, 414, 582
NlaIV	GGNNCC	1 cut(s)	26
PaeR7I	CTCGAG	1 cut(s)	334
PcsI	WCGNNNNNNNCGW	2 cut(s)	63, 108
PdiI	GCCGGC	2 cut(s)	185, 189
PflFI	GACNNNGTC	1 cut(s)	701
PkrI	GCNGC	2 cut(s)	358, 480
PleI	GAGTC	2 cut(s)	54, 383
PpsI	GAGTC	2 cut(s)	54, 383
Psp124BI	GAGCTC	1 cut(s)	714
Psp6I	CCWGG	3 cut(s)	366, 589, 699
PspGI	CCWGG	3 cut(s)	366, 589, 699
PspN4I	GGNNCC	1 cut(s)	26
PspPI	GGNCC	1 cut(s)	30
PsuI	RGATCY	2 cut(s)	324, 427
PsyI	GACNNNGTC	1 cut(s)	701
RigI	GGCCGGCC	1 cut(s)	187
RsaI	GTAC	3 cut(s)	26, 56, 452
RsaNI	GTAC	3 cut(s)	25, 55, 451
SacI	GAGCTC	1 cut(s)	714
SacII	CCGCGG	1 cut(s)	52
SaqAI	TTAA	2 cut(s)	501, 537
SatI	GCNGC	2 cut(s)	357, 479
Sau3AI	GATC	4 cut(s)	324, 372, 427, 526
Sau96I	GGNCC	1 cut(s)	30
SchI	GAGTC	2 cut(s)	54, 383
ScrFI	CCNGG	5 cut(s)	22, 29, 368, 591, 701
SduI	GDGCHC	1 cut(s)	714
SexAI	ACCWGGT	1 cut(s)	699
SfaNI	GCATC	1 cut(s)	124
Sfr274I	CTCGAG	1 cut(s)	334
Sfr303I	CCGCGG	1 cut(s)	52
SgrBI	CCGCGG	1 cut(s)	52
SlaI	CTCGAG	1 cut(s)	334
SmlI	CTYRAG	1 cut(s)	334
SmoI	CTYRAG	1 cut(s)	334
Sse9I	AATT	5 cut(s)	126, 239, 584, 640, 689
SsiI	CCGC	5 cut(s)	6, 49, 51, 71, 359
SspMI	CTAG	1 cut(s)	140
SstI	GAGCTC	1 cut(s)	714
StyD4I	CCNGG	5 cut(s)	20, 27, 366, 589, 699
StyI	CCWWGG	3 cut(s)	150, 410, 727
TaaI	ACNGT	2 cut(s)	535, 614
TaqI	TCGA	3 cut(s)	111, 132, 335
TasI	AATT	5 cut(s)	126, 239, 584, 640, 689
Tru1I	TTAA	2 cut(s)	501, 537
Tru9I	TTAA	2 cut(s)	501, 537
TscAI	CASTG	3 cut(s)	424, 529, 619
TseI	GCWGC	2 cut(s)	356, 478
TspDTI	ATGAA	1 cut(s)	567
TspGWI	ACGGA	1 cut(s)	72
TspRI	CASTG	3 cut(s)	424, 529, 619
Tth111I	GACNNNGTC	1 cut(s)	701
XapI	RAATTY	2 cut(s)	126, 584
XhoI	CTCGAG	1 cut(s)	334
XmiI	GTMKAC	1 cut(s)	395
XspI	CTAG	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.