Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0001460

Physical Location & Seq

Genomic Coordinates Reverse (-)

26738753 .. 26740064

Gene Structure 1312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g25060.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGAGCAAATCCAGCACAAGTACGTAACCGTACAAGGCCTGAAGCTCCACGTCGCCGACATCGGAACAGGCTCCAATGTGGTCGTGTTCCTGCACGGTTTCCCGGAAATTTGGTACTCGTGGCGGCACCACATGATTGCGGTAGCCAACGCCGGCTTCCGGGCCATCGCTCCCGACTACCGCGGATACGGACTATCCGACCCGCCTCCCCAATCCGAGAAGACCTCGTACCGTGACCTCGCCAGTGACATCCTTGGAATTCTTGATTCCCTTGCTATTCCCAAGGTTTTCCTAATTGCAAAAGATTTTGGAGTTCGGGTGGCGACATTATTTTCCCTTCTGCACGCGGAGAGGGTCTTCGGCGTTGTAACAATGGGAGCGCCAATCATGCCACCAGGCCCTCGTAGAATCGATAAATCTCTCCAAGAAGGTCTCTACATTTCAAGATGGCAGGAACCTGGACGGGCAGAGGCTGATTTTGGGCGCCTTGATGCGAAAACAGTTGTTCGTAATGTTTACATCCTTTTCTCCAGAAGCGAAATACCAATAGCTGCAGAAGACCAGGAGATTATGGACCTCGTGGATCCATCTAAGCCTCTTCCCCCTTGGTTCAGTGAGGGTGATCTTGCAGCATATGGAGCTTTGTATGAGAAATCAGGTTTCCGAACTGCGCTACAAGTTCCATACAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0001676 GO:0002532 GO:0002538 GO:0002539 GO:0003008 GO:0003013 GO:0003674 GO:0003824 GO:0004301 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006082 GO:0006629 GO:0006631 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0006954 GO:0007600 GO:0008015 GO:0008150 GO:0008152 GO:0008217 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0016801 GO:0016803 GO:0019233 GO:0019752 GO:0030258 GO:0032501 GO:0032787 GO:0033559 GO:0042577 GO:0042578 GO:0042579 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043651 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045777 GO:0046839 GO:0046872 GO:0050877 GO:0050896 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

231

Amino Acids

25.67

Weight (kDa)

6.3

Isoelectric Point (pI)

38.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001460)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g05700 FvH4_3g04781 FvH4_3g04781 FvH4_3g04781 FvH4_3g04784 FvH4_3g04784 FvH4_3g04790 FvH4_3g04790 FvH4_3g04790
malus_domestica	MD05G1316900.v1.1 MD05G1317400.v1.1 MD10G1297200.v1.1
prunus_persica	Prupe.4G043200_v2.0.a1 Prupe.4G043200_v2.0.a1
pyrus_communis	pycom05g29400 pycom10g25010 pycom10g25060
rosa_chinensis	RchiOBHm_Chr5g0007821 RchiOBHm_Chr5g0007841 RchiOBHm_Chr5g0007871 RchiOBHm_Chr5g0007881
rosa_laevigata	RLG00000031499 RLG00000031500 RLG00000031501
rosa_multiflora	Rmu_co8472583.1_g000001 Rmu_sc0005098.1_g000007 Rmu_sc0005098.1_g000012
rosa_roxburghii	Rroxscaffold_1G00068550 Rroxscaffold_1G00068560 Rroxscaffold_1G00068580
rosa_rugosa	Rorug04G0430600 Rorug04G0430600 Rorug04G0430600 Rorug04G0430600 Rorug04G0430700 Rorug04G0430800
rosa_samantha	Rh5AG059200 Rh5AG059300 Rh5AG059600 Rh5AG059700 Rh5BG056200 Rh5BG056300 Rh5BG056400 Rh5BG056500 Rh5CG066000 Rh5CG066100 Rh5CG066400 Rh5DG055300 Rh5DG055500
rosa_wichuraiana	Rw5G006050 Rw5G006060 Rw5G006070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	126, 483
AccII	CGCG	2 cut(s)	183, 347
AciI	CCGC	6 cut(s)	124, 140, 181, 183, 203, 347
AclWI	GGATC	2 cut(s)	578, 591
AcsI	RAATTY	2 cut(s)	108, 258
AcuI	CTGAAG	1 cut(s)	62
AcyI	GRCGYC	1 cut(s)	484
AfaI	GTAC	4 cut(s)	23, 33, 116, 230
AfiI	CCNNNNNNNGG	1 cut(s)	159
AgsI	TTSAA	1 cut(s)	444
AjiI	CACGTC	1 cut(s)	52
AjnI	CCWGG	3 cut(s)	394, 457, 561
AjuI	GAANNNNNNNTTGG	2 cut(s)	140, 172
AluBI	AGCT	3 cut(s)	46, 551, 641
AluI	AGCT	3 cut(s)	46, 551, 641
Alw26I	GTCTC	1 cut(s)	437
AlwI	GGATC	2 cut(s)	578, 591
AlwNI	CAGNNNCTG	1 cut(s)	473
AoxI	GGCC	3 cut(s)	37, 162, 397
ApeKI	GCWGC	2 cut(s)	551, 629
ApoI	RAATTY	2 cut(s)	108, 258
AspLEI	GCGC	3 cut(s)	382, 486, 673
AspS9I	GGNCC	3 cut(s)	162, 398, 574
AsuC2I	CCSGG	2 cut(s)	104, 161
AsuHPI	GGTGA	1 cut(s)	632
AvaII	GGWCC	1 cut(s)	574
BamHI	GGATCC	1 cut(s)	583
BanI	GGYRCC	2 cut(s)	126, 483
BarI	GAAGNNNNNNTAC	2 cut(s)	212, 244
BauI	CACGAG	2 cut(s)	118, 578
BbsI	GAAGAC	3 cut(s)	227, 349, 564
BbvI	GCAGC	2 cut(s)	538, 641
BccI	CCATC	3 cut(s)	173, 441, 595
BciT130I	CCWGG	3 cut(s)	396, 459, 563
BciVI	GTATCC	1 cut(s)	179
BcnI	CCSGG	2 cut(s)	104, 161
BcoDI	GTCTC	1 cut(s)	437
BfmI	CTRYAG	1 cut(s)	552
BfoI	RGCGCY	2 cut(s)	383, 487
BfuI	GTATCC	1 cut(s)	179
BisI	GCNGC	3 cut(s)	125, 552, 630
BlsI	GCNGC	3 cut(s)	126, 553, 631
Bme1390I	CCNGG	5 cut(s)	104, 161, 396, 459, 563
Bme18I	GGWCC	1 cut(s)	574
BmgBI	CACGTC	1 cut(s)	52
BmgT120I	GGNCC	3 cut(s)	162, 398, 574
BmiI	GGNNCC	5 cut(s)	73, 128, 456, 485, 585
BmrFI	CCNGG	5 cut(s)	104, 161, 396, 459, 563
BmsI	GCATC	1 cut(s)	481
BpiI	GAAGAC	3 cut(s)	227, 349, 564
BplI	GAGNNNNNCTC	2 cut(s)	209, 241
BpmI	CTGGAG	1 cut(s)	514
BpuMI	CCSGG	2 cut(s)	104, 161
Bsa29I	ATCGAT	1 cut(s)	411
BsaAI	YACGTR	1 cut(s)	25
BsaHI	GRCGYC	1 cut(s)	484
BsaI	GGTCTC	1 cut(s)	437
BsaJI	CCNNGG	4 cut(s)	181, 253, 282, 605
BsaXI	ACNNNNNCTCC	2 cut(s)	303, 333
Bsc4I	CCNNNNNNNGG	1 cut(s)	159
Bse118I	RCCGGY	1 cut(s)	152
Bse1I	ACTGG	1 cut(s)	243
BseBI	CCWGG	3 cut(s)	396, 459, 563
BseCI	ATCGAT	1 cut(s)	411
BseDI	CCNNGG	4 cut(s)	181, 253, 282, 605
BseGI	GGATG	2 cut(s)	249, 519
BseLI	CCNNNNNNNGG	1 cut(s)	159
BseNI	ACTGG	1 cut(s)	243
BseXI	GCAGC	2 cut(s)	538, 641
BsgI	GTGCAG	2 cut(s)	77, 326
Bsh1236I	CGCG	2 cut(s)	183, 347
BshFI	GGCC	3 cut(s)	39, 164, 399
BshNI	GGYRCC	2 cut(s)	126, 483
BshVI	ATCGAT	1 cut(s)	411
BsiSI	CCGG	3 cut(s)	104, 153, 160
BslI	CCNNNNNNNGG	1 cut(s)	159
BsmAI	GTCTC	1 cut(s)	437
BsnI	GGCC	3 cut(s)	39, 164, 399
Bso31I	GGTCTC	1 cut(s)	437
Bsp143I	GATC	2 cut(s)	583, 622
BspACI	CCGC	6 cut(s)	124, 140, 181, 183, 203, 347
BspANI	GGCC	3 cut(s)	39, 164, 399
BspDI	ATCGAT	1 cut(s)	411
BspFNI	CGCG	2 cut(s)	183, 347
BspLI	GGNNCC	5 cut(s)	73, 128, 456, 485, 585
BspMAI	CTGCAG	1 cut(s)	556
BspPI	GGATC	2 cut(s)	578, 591
BspT107I	GGYRCC	2 cut(s)	126, 483
BspTNI	GGTCTC	1 cut(s)	437
BsrFI	RCCGGY	1 cut(s)	152
BsrI	ACTGG	1 cut(s)	243
BssAI	RCCGGY	1 cut(s)	152
BssECI	CCNNGG	4 cut(s)	181, 253, 282, 605
BssMI	GATC	2 cut(s)	583, 622
BssNI	GRCGYC	1 cut(s)	484
BssSI	CACGAG	2 cut(s)	118, 578
BssT1I	CCWWGG	3 cut(s)	253, 282, 605
Bst2BI	CACGAG	2 cut(s)	118, 578
Bst2UI	CCWGG	3 cut(s)	396, 459, 563
Bst4CI	ACNGT	4 cut(s)	31, 98, 233, 502
Bst6I	CTCTTC	1 cut(s)	603
BstACI	GRCGYC	1 cut(s)	484
BstBAI	YACGTR	1 cut(s)	25
BstC8I	GCNNGC	2 cut(s)	154, 345
BstDEI	CTNAG	1 cut(s)	591
BstDSI	CCRYGG	1 cut(s)	181
BstF5I	GGATG	2 cut(s)	249, 519
BstFNI	CGCG	2 cut(s)	183, 347
BstH2I	RGCGCY	2 cut(s)	383, 487
BstHHI	GCGC	3 cut(s)	382, 486, 673
BstKTI	GATC	2 cut(s)	586, 625
BstMAI	GTCTC	1 cut(s)	437
BstMBI	GATC	2 cut(s)	583, 622
BstMWI	GCNNNNNNNGC	3 cut(s)	13, 388, 638
BstNI	CCWGG	3 cut(s)	396, 459, 563
BstSCI	CCNGG	5 cut(s)	102, 159, 394, 457, 561
BstSFI	CTRYAG	1 cut(s)	552
BstSNI	TACGTA	1 cut(s)	25
BstUI	CGCG	2 cut(s)	183, 347
BstV1I	GCAGC	2 cut(s)	538, 641
BstV2I	GAAGAC	3 cut(s)	227, 349, 564
BstX2I	RGATCY	1 cut(s)	583
BstYI	RGATCY	1 cut(s)	583
Bsu15I	ATCGAT	1 cut(s)	411
BsuI	GTATCC	1 cut(s)	179
BsuRI	GGCC	3 cut(s)	39, 164, 399
BsuTUI	ATCGAT	1 cut(s)	411
BtgI	CCRYGG	1 cut(s)	181
BtgZI	GCGATG	1 cut(s)	151
BtrI	CACGTC	1 cut(s)	52
BtsCI	GGATG	2 cut(s)	249, 519
BtsIMutI	CAGTG	2 cut(s)	250, 619
Cac8I	GCNNGC	2 cut(s)	154, 345
CaiI	CAGNNNCTG	1 cut(s)	473
CfoI	GCGC	3 cut(s)	382, 486, 673
Cfr10I	RCCGGY	1 cut(s)	152
Cfr13I	GGNCC	3 cut(s)	162, 398, 574
Cfr42I	CCGCGG	1 cut(s)	184
ClaI	ATCGAT	1 cut(s)	411
Csp6I	GTAC	4 cut(s)	22, 32, 115, 229
CviAII	CATG	2 cut(s)	133, 388
CviQI	GTAC	4 cut(s)	22, 32, 115, 229
DdeI	CTNAG	1 cut(s)	591
DinI	GGCGCC	1 cut(s)	485
DpnI	GATC	2 cut(s)	585, 624
DpnII	GATC	2 cut(s)	583, 622
Eam1104I	CTCTTC	1 cut(s)	603
EarI	CTCTTC	1 cut(s)	603
Eco105I	TACGTA	1 cut(s)	25
Eco130I	CCWWGG	3 cut(s)	253, 282, 605
Eco147I	AGGCCT	1 cut(s)	39
Eco31I	GGTCTC	1 cut(s)	437
Eco47I	GGWCC	1 cut(s)	574
Eco57I	CTGAAG	1 cut(s)	62
EcoO109I	RGGNCCY	1 cut(s)	398
EcoRI	GAATTC	1 cut(s)	258
EcoRII	CCWGG	3 cut(s)	394, 457, 561
EcoT14I	CCWWGG	3 cut(s)	253, 282, 605
EgeI	GGCGCC	1 cut(s)	485
EheI	GGCGCC	1 cut(s)	485
ErhI	CCWWGG	3 cut(s)	253, 282, 605
FaeI	CATG	2 cut(s)	136, 391
FaiI	YATR	7 cut(s)	134, 389, 572, 634, 636, 648, 685
FatI	CATG	2 cut(s)	132, 387
FauI	CCCGC	1 cut(s)	210
FauNDI	CATATG	1 cut(s)	634
Fnu4HI	GCNGC	3 cut(s)	125, 552, 630
FokI	GGATG	2 cut(s)	236, 506
Fsp4HI	GCNGC	3 cut(s)	125, 552, 630
GlaI	GCGC	3 cut(s)	381, 485, 672
GluI	GCNGC	3 cut(s)	125, 552, 630
GsuI	CTGGAG	1 cut(s)	514
HaeII	RGCGCY	2 cut(s)	383, 487
HaeIII	GGCC	3 cut(s)	39, 164, 399
HapII	CCGG	3 cut(s)	104, 153, 160
HhaI	GCGC	3 cut(s)	382, 486, 673
Hin1I	GRCGYC	1 cut(s)	484
Hin1II	CATG	2 cut(s)	136, 391
Hin6I	GCGC	3 cut(s)	380, 484, 671
HinP1I	GCGC	3 cut(s)	380, 484, 671
HinfI	GANTC	2 cut(s)	266, 408
HpaII	CCGG	3 cut(s)	104, 153, 160
HphI	GGTGA	1 cut(s)	632
Hpy166II	GTNNAC	1 cut(s)	517
Hpy188I	TCNGA	4 cut(s)	65, 199, 217, 665
Hpy188III	TCNNGA	4 cut(s)	173, 263, 444, 531
Hpy8I	GTNNAC	1 cut(s)	517
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	2 cut(s)	347, 422
HpyCH4III	ACNGT	4 cut(s)	31, 98, 233, 502
HpyCH4IV	ACGT	2 cut(s)	24, 51
HpyCH4V	TGCA	5 cut(s)	94, 299, 343, 554, 629
HpyF10VI	GCNNNNNNNGC	3 cut(s)	13, 388, 638
HpyF3I	CTNAG	1 cut(s)	591
HpySE526I	ACGT	2 cut(s)	24, 51
Hsp92I	GRCGYC	1 cut(s)	484
Hsp92II	CATG	2 cut(s)	136, 391
HspAI	GCGC	3 cut(s)	380, 484, 671
KasI	GGCGCC	1 cut(s)	483
KroI	GCCGGC	1 cut(s)	152
KroNI	GCCGGC	1 cut(s)	154
KspI	CCGCGG	1 cut(s)	184
Kzo9I	GATC	2 cut(s)	583, 622
LmnI	GCTCC	6 cut(s)	4, 51, 77, 175, 377, 638
Lsp1109I	GCAGC	2 cut(s)	538, 641
LweI	GCATC	1 cut(s)	481
MaeII	ACGT	2 cut(s)	24, 51
MaeIII	GTNAC	4 cut(s)	25, 233, 245, 367
MalI	GATC	2 cut(s)	585, 624
MboI	GATC	2 cut(s)	583, 622
MboII	GAAGA	4 cut(s)	232, 349, 569, 590
MflI	RGATCY	1 cut(s)	583
MluCI	AATT	3 cut(s)	108, 258, 294
Mly113I	GGCGCC	1 cut(s)	484
MmeI	TCCRAC	1 cut(s)	222
MnlI	CCTC	9 cut(s)	216, 235, 248, 345, 411, 463, 587, 606, 610
MroNI	GCCGGC	1 cut(s)	152
MspA1I	CMGCKG	1 cut(s)	183
MspI	CCGG	3 cut(s)	104, 153, 160
MspR9I	CCNGG	5 cut(s)	104, 161, 396, 459, 563
MvaI	CCWGG	3 cut(s)	396, 459, 563
MvnI	CGCG	2 cut(s)	183, 347
MwoI	GCNNNNNNNGC	3 cut(s)	13, 388, 638
NaeI	GCCGGC	1 cut(s)	154
NarI	GGCGCC	1 cut(s)	484
NciI	CCSGG	2 cut(s)	104, 161
NdeI	CATATG	1 cut(s)	634
NdeII	GATC	2 cut(s)	583, 622
NgoMIV	GCCGGC	1 cut(s)	152
NlaIII	CATG	2 cut(s)	136, 391
NlaIV	GGNNCC	5 cut(s)	73, 128, 456, 485, 585
NmuCI	GTSAC	2 cut(s)	233, 245
PceI	AGGCCT	1 cut(s)	39
PcsI	WCGNNNNNNNCGW	1 cut(s)	195
PdiI	GCCGGC	1 cut(s)	154
PfeI	GAWTC	2 cut(s)	266, 408
PfoI	TCCNGGA	1 cut(s)	102
PkrI	GCNGC	3 cut(s)	126, 553, 631
PluTI	GGCGCC	1 cut(s)	487
Ppu21I	YACGTR	1 cut(s)	25
Psp6I	CCWGG	3 cut(s)	394, 457, 561
PspGI	CCWGG	3 cut(s)	394, 457, 561
PspN4I	GGNNCC	5 cut(s)	73, 128, 456, 485, 585
PspPI	GGNCC	3 cut(s)	162, 398, 574
PstI	CTGCAG	1 cut(s)	556
PstNI	CAGNNNCTG	1 cut(s)	473
PsuI	RGATCY	1 cut(s)	583
RsaI	GTAC	4 cut(s)	23, 33, 116, 230
RsaNI	GTAC	4 cut(s)	22, 32, 115, 229
SacII	CCGCGG	1 cut(s)	184
SatI	GCNGC	3 cut(s)	125, 552, 630
Sau3AI	GATC	2 cut(s)	583, 622
Sau96I	GGNCC	3 cut(s)	162, 398, 574
ScrFI	CCNGG	5 cut(s)	104, 161, 396, 459, 563
SfaNI	GCATC	1 cut(s)	481
SfcI	CTRYAG	1 cut(s)	552
SfoI	GGCGCC	1 cut(s)	485
Sfr303I	CCGCGG	1 cut(s)	184
SgrBI	CCGCGG	1 cut(s)	184
SinI	GGWCC	1 cut(s)	574
SnaBI	TACGTA	1 cut(s)	25
Sse9I	AATT	3 cut(s)	108, 258, 294
SseBI	AGGCCT	1 cut(s)	39
SsiI	CCGC	6 cut(s)	124, 140, 181, 183, 203, 347
SspDI	GGCGCC	1 cut(s)	483
StuI	AGGCCT	1 cut(s)	39
StyD4I	CCNGG	5 cut(s)	102, 159, 394, 457, 561
StyI	CCWWGG	3 cut(s)	253, 282, 605
TaaI	ACNGT	4 cut(s)	31, 98, 233, 502
TaiI	ACGT	2 cut(s)	27, 54
TaqI	TCGA	1 cut(s)	411
TasI	AATT	3 cut(s)	108, 258, 294
TauI	GCSGC	1 cut(s)	127
TfiI	GAWTC	2 cut(s)	266, 408
TscAI	CASTG	2 cut(s)	250, 619
TseFI	GTSAC	2 cut(s)	233, 245
TseI	GCWGC	2 cut(s)	551, 629
Tsp45I	GTSAC	2 cut(s)	233, 245
TspGWI	ACGGA	1 cut(s)	204
TspRI	CASTG	2 cut(s)	250, 619
VpaK11BI	GGWCC	1 cut(s)	574
XapI	RAATTY	2 cut(s)	108, 258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.