Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8472583.1

Orthogroup ID

OG0001460

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1752

Gene Structure 1752 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8472583.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 872 bp

gtcccaatgtggtcgtgttcctgcacggattcccagaaatctggtactcgtggcgccaccagatgatcgccgtagccactgccgggttcagggccatagcgcccgactaccgcgggtacggactctccgacccgccacccgaaccggagaagaccaccttccatgacctcatcaatgacctccttggaattctcgatgctttagccattctcaaggttttcctcattgcgaaagattttggagcccggccggcatacttgtttgcccttctgcacccagaaagggtatcgggagttgtaacaatgggagttccatacacaccaccaacaagtcgtccccaatacgataattccctccctgaaggtttttacatcaacagatggcaggaacctggccgggcagaagctgattttggacgccttgatgcaaaaacagttgttcggaatatttacatccttttcgcaagaagtgaactaccaatagctgcagaaaaccaggagatcatggacttggtggactcgtctacacctcttcccccatggtttactgaggaagatcttgaagcatatggaaagttgtacaagaaatcaggtttccaaactgcactgcgagttccatatagggtgattaaggaagatttgggcataaccgttgatccaagtgttaaagttccagtgctgactataatgggaaacaaggattatgtattcaaatttccagggatggcagattacataaacagtggaatgttgaaagagtttgtccccgatttggagattgtatttcttcctgaaggaactcattttgttcaagaacaattgcctgaacagattaatgagctcatcctcaccttccttggaaagcatatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0001676 GO:0002532 GO:0002538 GO:0002539 GO:0003008 GO:0003013 GO:0003674 GO:0003824 GO:0004301 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006082 GO:0006629 GO:0006631 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0006954 GO:0007600 GO:0008015 GO:0008150 GO:0008152 GO:0008217 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0016801 GO:0016803 GO:0019233 GO:0019752 GO:0030258 GO:0032501 GO:0032787 GO:0033559 GO:0042577 GO:0042578 GO:0042579 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043651 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045777 GO:0046839 GO:0046872 GO:0050877 GO:0050896 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

289

Amino Acids

32.67

Weight (kDa)

5.05

Isoelectric Point (pI)

44.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001460)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g05700 FvH4_3g04781 FvH4_3g04781 FvH4_3g04781 FvH4_3g04784 FvH4_3g04784 FvH4_3g04790 FvH4_3g04790 FvH4_3g04790
malus_domestica	MD05G1316900.v1.1 MD05G1317400.v1.1 MD10G1297200.v1.1
prunus_persica	Prupe.4G043200_v2.0.a1 Prupe.4G043200_v2.0.a1
pyrus_communis	pycom05g29400 pycom10g25010 pycom10g25060
rosa_chinensis	RchiOBHm_Chr5g0007821 RchiOBHm_Chr5g0007841 RchiOBHm_Chr5g0007871 RchiOBHm_Chr5g0007881
rosa_laevigata	RLG00000031499 RLG00000031500 RLG00000031501
rosa_multiflora	Rmu_co8472583.1_g000001 Rmu_sc0005098.1_g000007 Rmu_sc0005098.1_g000012
rosa_roxburghii	Rroxscaffold_1G00068550 Rroxscaffold_1G00068560 Rroxscaffold_1G00068580
rosa_rugosa	Rorug04G0430600 Rorug04G0430600 Rorug04G0430600 Rorug04G0430600 Rorug04G0430700 Rorug04G0430800
rosa_samantha	Rh5AG059200 Rh5AG059300 Rh5AG059600 Rh5AG059700 Rh5BG056200 Rh5BG056300 Rh5BG056400 Rh5BG056500 Rh5CG066000 Rh5CG066100 Rh5CG066400 Rh5DG055300 Rh5DG055500
rosa_wichuraiana	Rw5G006050 Rw5G006060 Rw5G006070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	53
AccI	GTMKAC	1 cut(s)	523
AccII	CGCG	1 cut(s)	113
AciI	CCGC	3 cut(s)	111, 113, 133
AclWI	GGATC	1 cut(s)	649
AcoI	YGGCCR	2 cut(s)	247, 393
AcsI	RAATTY	2 cut(s)	188, 712
AcuI	CTGAAG	2 cut(s)	380, 812
AcyI	GRCGYC	2 cut(s)	54, 417
AfaI	GTAC	3 cut(s)	46, 118, 580
AfiI	CCNNNNNNNGG	4 cut(s)	83, 89, 282, 771
AgsI	TTSAA	4 cut(s)	562, 711, 753, 811
AjnI	CCWGG	3 cut(s)	390, 494, 717
AjuI	GAANNNNNNNTTGG	2 cut(s)	395, 427
AluBI	AGCT	3 cut(s)	406, 484, 840
AluI	AGCT	3 cut(s)	406, 484, 840
Alw21I	GWGCWC	1 cut(s)	842
AlwI	GGATC	1 cut(s)	649
AlwNI	CAGNNNCTG	1 cut(s)	406
AoxI	GGCC	3 cut(s)	92, 247, 393
ApeKI	GCWGC	1 cut(s)	484
ApoI	RAATTY	2 cut(s)	188, 712
AseI	ATTAAT	1 cut(s)	833
AspLEI	GCGC	2 cut(s)	56, 102
AspS9I	GGNCC	1 cut(s)	92
AsuC2I	CCSGG	3 cut(s)	84, 246, 397
AsuHPI	GGTGA	2 cut(s)	636, 840
BanI	GGYRCC	1 cut(s)	53
BanII	GRGCYC	2 cut(s)	246, 842
BauI	CACGAG	1 cut(s)	48
BbsI	GAAGAC	1 cut(s)	157
Bbv12I	GWGCWC	1 cut(s)	842
BbvI	GCAGC	1 cut(s)	471
BccI	CCATC	2 cut(s)	374, 717
BceAI	ACGGC	1 cut(s)	55
BciT130I	CCWGG	3 cut(s)	392, 496, 719
BcnI	CCSGG	3 cut(s)	84, 246, 397
BfmI	CTRYAG	1 cut(s)	485
BfoI	RGCGCY	2 cut(s)	57, 103
BglI	GCCNNNNNGGC	1 cut(s)	250
BglII	AGATCT	1 cut(s)	555
BisI	GCNGC	1 cut(s)	485
BlsI	GCNGC	1 cut(s)	486
Bme1390I	CCNGG	6 cut(s)	84, 246, 392, 397, 496, 719
BmgT120I	GGNCC	1 cut(s)	92
BmiI	GGNNCC	3 cut(s)	55, 243, 389
BmrFI	CCNGG	6 cut(s)	84, 246, 392, 397, 496, 719
BmsI	GCATC	2 cut(s)	186, 414
BpiI	GAAGAC	1 cut(s)	157
BpuEI	CTTGAG	1 cut(s)	196
BpuMI	CCSGG	3 cut(s)	84, 246, 397
BsaHI	GRCGYC	2 cut(s)	54, 417
BsaJI	CCNNGG	5 cut(s)	111, 183, 538, 718, 855
BsaWI	WCCGGW	1 cut(s)	144
BsaXI	ACNNNNNCTCC	2 cut(s)	109, 139
Bsc4I	CCNNNNNNNGG	4 cut(s)	83, 89, 282, 771
Bse118I	RCCGGY	1 cut(s)	249
Bse1I	ACTGG	1 cut(s)	673
Bse3DI	GCAATG	1 cut(s)	224
BseBI	CCWGG	3 cut(s)	392, 496, 719
BseDI	CCNNGG	5 cut(s)	111, 183, 538, 718, 855
BseGI	GGATG	3 cut(s)	452, 728, 842
BseLI	CCNNNNNNNGG	4 cut(s)	83, 89, 282, 771
BseMI	GCAATG	1 cut(s)	224
BseMII	CTCAG	1 cut(s)	539
BseNI	ACTGG	1 cut(s)	673
BseX3I	CGGCCG	1 cut(s)	247
BseXI	GCAGC	1 cut(s)	471
BsgI	GTGCAG	3 cut(s)	7, 256, 587
Bsh1236I	CGCG	1 cut(s)	113
Bsh1285I	CGRYCG	1 cut(s)	250
BshFI	GGCC	3 cut(s)	94, 249, 395
BshNI	GGYRCC	1 cut(s)	53
BsiEI	CGRYCG	1 cut(s)	250
BsiHKAI	GWGCWC	1 cut(s)	842
BsiSI	CCGG	5 cut(s)	83, 145, 246, 250, 396
BslFI	GGGAC	2 cut(s)	320, 748
BslI	CCNNNNNNNGG	4 cut(s)	83, 89, 282, 771
BsmFI	GGGAC	2 cut(s)	320, 748
BsnI	GGCC	3 cut(s)	94, 249, 395
Bsp1286I	GDGCHC	2 cut(s)	246, 842
Bsp1407I	TGTACA	1 cut(s)	578
Bsp143I	GATC	4 cut(s)	65, 500, 555, 654
Bsp19I	CCATGG	1 cut(s)	538
BspACI	CCGC	3 cut(s)	111, 113, 133
BspANI	GGCC	3 cut(s)	94, 249, 395
BspCNI	CTCAG	1 cut(s)	540
BspFNI	CGCG	1 cut(s)	113
BspLI	GGNNCC	3 cut(s)	55, 243, 389
BspMAI	CTGCAG	1 cut(s)	489
BspPI	GGATC	1 cut(s)	649
BspT107I	GGYRCC	1 cut(s)	53
BsrDI	GCAATG	1 cut(s)	224
BsrFI	RCCGGY	1 cut(s)	249
BsrGI	TGTACA	1 cut(s)	578
BsrI	ACTGG	1 cut(s)	673
BssAI	RCCGGY	1 cut(s)	249
BssECI	CCNNGG	5 cut(s)	111, 183, 538, 718, 855
BssMI	GATC	4 cut(s)	65, 500, 555, 654
BssNI	GRCGYC	2 cut(s)	54, 417
BssSI	CACGAG	1 cut(s)	48
BssT1I	CCWWGG	3 cut(s)	183, 538, 855
Bst2BI	CACGAG	1 cut(s)	48
Bst2UI	CCWGG	3 cut(s)	392, 496, 719
Bst4CI	ACNGT	3 cut(s)	435, 651, 742
Bst6I	CTCTTC	1 cut(s)	536
BstACI	GRCGYC	2 cut(s)	54, 417
BstAUI	TGTACA	1 cut(s)	578
BstC8I	GCNNGC	1 cut(s)	251
BstDEI	CTNAG	1 cut(s)	548
BstDSI	CCRYGG	2 cut(s)	111, 538
BstF5I	GGATG	3 cut(s)	452, 728, 842
BstFNI	CGCG	1 cut(s)	113
BstH2I	RGCGCY	2 cut(s)	57, 103
BstHHI	GCGC	2 cut(s)	56, 102
BstKTI	GATC	4 cut(s)	68, 503, 558, 657
BstMBI	GATC	4 cut(s)	65, 500, 555, 654
BstMCI	CGRYCG	1 cut(s)	250
BstMWI	GCNNNNNNNGC	1 cut(s)	250
BstNI	CCWGG	3 cut(s)	392, 496, 719
BstSCI	CCNGG	6 cut(s)	82, 244, 390, 395, 494, 717
BstSFI	CTRYAG	1 cut(s)	485
BstUI	CGCG	1 cut(s)	113
BstV1I	GCAGC	1 cut(s)	471
BstV2I	GAAGAC	1 cut(s)	157
BstX2I	RGATCY	1 cut(s)	555
BstXI	CCANNNNNNTGG	1 cut(s)	41
BstYI	RGATCY	1 cut(s)	555
BstZI	CGGCCG	1 cut(s)	247
BsuRI	GGCC	3 cut(s)	94, 249, 395
BtgI	CCRYGG	2 cut(s)	111, 538
BtsCI	GGATG	3 cut(s)	452, 728, 842
BtsI	GCAGTG	2 cut(s)	77, 604
BtsIMutI	CAGTG	4 cut(s)	77, 604, 680, 747
Cac8I	GCNNGC	1 cut(s)	251
CaiI	CAGNNNCTG	1 cut(s)	406
CfoI	GCGC	2 cut(s)	56, 102
Cfr10I	RCCGGY	1 cut(s)	249
Cfr13I	GGNCC	1 cut(s)	92
Cfr42I	CCGCGG	1 cut(s)	114
CseI	GACGC	1 cut(s)	425
Csp6I	GTAC	3 cut(s)	45, 117, 579
CviAII	CATG	3 cut(s)	163, 504, 539
CviJI	RGCY	9 cut(s)	76, 94, 205, 244, 249, 395, 406, 484, 840
CviKI_1	RGCY	9 cut(s)	76, 94, 205, 244, 249, 395, 406, 484, 840
CviQI	GTAC	3 cut(s)	45, 117, 579
DdeI	CTNAG	1 cut(s)	548
DinI	GGCGCC	1 cut(s)	55
DpnI	GATC	4 cut(s)	67, 502, 557, 656
DpnII	GATC	4 cut(s)	65, 500, 555, 654
EaeI	YGGCCR	2 cut(s)	247, 393
EagI	CGGCCG	1 cut(s)	247
Eam1104I	CTCTTC	1 cut(s)	536
EarI	CTCTTC	1 cut(s)	536
Ecl136II	GAGCTC	1 cut(s)	840
EclXI	CGGCCG	1 cut(s)	247
Eco130I	CCWWGG	3 cut(s)	183, 538, 855
Eco24I	GRGCYC	2 cut(s)	246, 842
Eco52I	CGGCCG	1 cut(s)	247
Eco53kI	GAGCTC	1 cut(s)	840
Eco57I	CTGAAG	2 cut(s)	380, 812
EcoICRI	GAGCTC	1 cut(s)	840
EcoRI	GAATTC	1 cut(s)	188
EcoRII	CCWGG	3 cut(s)	390, 494, 717
EcoT14I	CCWWGG	3 cut(s)	183, 538, 855
EcoT38I	GRGCYC	2 cut(s)	246, 842
EgeI	GGCGCC	1 cut(s)	55
EheI	GGCGCC	1 cut(s)	55
ErhI	CCWWGG	3 cut(s)	183, 538, 855
FaeI	CATG	3 cut(s)	166, 507, 542
FalI	AAGNNNNNCTT	2 cut(s)	142, 174
FaqI	GGGAC	2 cut(s)	320, 748
FatI	CATG	3 cut(s)	162, 503, 538
FauI	CCCGC	2 cut(s)	106, 140
FauNDI	CATATG	1 cut(s)	567
FblI	GTMKAC	1 cut(s)	523
Fnu4HI	GCNGC	1 cut(s)	485
FokI	GGATG	3 cut(s)	439, 735, 829
FriOI	GRGCYC	2 cut(s)	246, 842
Fsp4HI	GCNGC	1 cut(s)	485
GlaI	GCGC	2 cut(s)	55, 101
GluI	GCNGC	1 cut(s)	485
HaeII	RGCGCY	2 cut(s)	57, 103
HaeIII	GGCC	3 cut(s)	94, 249, 395
HapII	CCGG	5 cut(s)	83, 145, 246, 250, 396
HgaI	GACGC	1 cut(s)	425
HhaI	GCGC	2 cut(s)	56, 102
Hin1I	GRCGYC	2 cut(s)	54, 417
Hin1II	CATG	3 cut(s)	166, 507, 542
Hin6I	GCGC	2 cut(s)	54, 100
HinP1I	GCGC	2 cut(s)	54, 100
HinfI	GANTC	3 cut(s)	29, 122, 517
HpaII	CCGG	5 cut(s)	83, 145, 246, 250, 396
HphI	GGTGA	2 cut(s)	636, 840
Hpy166II	GTNNAC	4 cut(s)	472, 516, 524, 545
Hpy188I	TCNGA	2 cut(s)	129, 443
Hpy188III	TCNNGA	5 cut(s)	193, 290, 559, 790, 811
Hpy8I	GTNNAC	4 cut(s)	472, 516, 524, 545
HpyAV	CCTTC	5 cut(s)	168, 277, 355, 787, 861
HpyCH4III	ACNGT	3 cut(s)	435, 651, 742
HpyCH4V	TGCA	5 cut(s)	24, 273, 427, 487, 604
HpyF10VI	GCNNNNNNNGC	1 cut(s)	250
HpyF3I	CTNAG	1 cut(s)	548
Hsp92I	GRCGYC	2 cut(s)	54, 417
Hsp92II	CATG	3 cut(s)	166, 507, 542
HspAI	GCGC	2 cut(s)	54, 100
KasI	GGCGCC	1 cut(s)	53
KroI	GCCGGC	1 cut(s)	249
KroNI	GCCGGC	1 cut(s)	251
KspI	CCGCGG	1 cut(s)	114
Kzo9I	GATC	4 cut(s)	65, 500, 555, 654
LmnI	GCTCC	1 cut(s)	241
Lsp1109I	GCAGC	1 cut(s)	471
LweI	GCATC	2 cut(s)	186, 414
MaeIII	GTNAC	1 cut(s)	297
MalI	GATC	4 cut(s)	67, 502, 557, 656
MboI	GATC	4 cut(s)	65, 500, 555, 654
MboII	GAAGA	5 cut(s)	162, 523, 565, 646, 778
MfeI	CAATTG	1 cut(s)	817
MflI	RGATCY	1 cut(s)	555
MhlI	GDGCHC	2 cut(s)	246, 842
MluCI	AATT	4 cut(s)	188, 348, 712, 817
Mly113I	GGCGCC	1 cut(s)	54
MlyI	GAGTC	2 cut(s)	116, 511
MmeI	TCCRAC	1 cut(s)	152
MnlI	CCTC	7 cut(s)	178, 190, 232, 364, 539, 543, 856
MroNI	GCCGGC	1 cut(s)	249
MseI	TTAA	3 cut(s)	629, 665, 833
MspA1I	CMGCKG	1 cut(s)	113
MspI	CCGG	5 cut(s)	83, 145, 246, 250, 396
MspR9I	CCNGG	6 cut(s)	84, 246, 392, 397, 496, 719
MunI	CAATTG	1 cut(s)	817
MvaI	CCWGG	3 cut(s)	392, 496, 719
MvnI	CGCG	1 cut(s)	113
MwoI	GCNNNNNNNGC	1 cut(s)	250
NaeI	GCCGGC	1 cut(s)	251
NarI	GGCGCC	1 cut(s)	54
NciI	CCSGG	3 cut(s)	84, 246, 397
NcoI	CCATGG	1 cut(s)	538
NdeI	CATATG	1 cut(s)	567
NdeII	GATC	4 cut(s)	65, 500, 555, 654
NgoMIV	GCCGGC	1 cut(s)	249
NlaIII	CATG	3 cut(s)	166, 507, 542
NlaIV	GGNNCC	3 cut(s)	55, 243, 389
PcsI	WCGNNNNNNNCGW	1 cut(s)	125
PdiI	GCCGGC	1 cut(s)	251
PfeI	GAWTC	1 cut(s)	29
PkrI	GCNGC	1 cut(s)	486
PleI	GAGTC	2 cut(s)	116, 511
PluTI	GGCGCC	1 cut(s)	57
PpsI	GAGTC	2 cut(s)	116, 511
PshBI	ATTAAT	1 cut(s)	833
Psp124BI	GAGCTC	1 cut(s)	842
Psp6I	CCWGG	3 cut(s)	390, 494, 717
PspGI	CCWGG	3 cut(s)	390, 494, 717
PspN4I	GGNNCC	3 cut(s)	55, 243, 389
PspPI	GGNCC	1 cut(s)	92
PstI	CTGCAG	1 cut(s)	489
PstNI	CAGNNNCTG	1 cut(s)	406
PsuI	RGATCY	1 cut(s)	555
RsaI	GTAC	3 cut(s)	46, 118, 580
RsaNI	GTAC	3 cut(s)	45, 117, 579
SacI	GAGCTC	1 cut(s)	842
SacII	CCGCGG	1 cut(s)	114
SaqAI	TTAA	3 cut(s)	629, 665, 833
SatI	GCNGC	1 cut(s)	485
Sau3AI	GATC	4 cut(s)	65, 500, 555, 654
Sau96I	GGNCC	1 cut(s)	92
SchI	GAGTC	2 cut(s)	116, 511
ScrFI	CCNGG	6 cut(s)	84, 246, 392, 397, 496, 719
SduI	GDGCHC	2 cut(s)	246, 842
SfaNI	GCATC	2 cut(s)	186, 414
SfcI	CTRYAG	1 cut(s)	485
SfoI	GGCGCC	1 cut(s)	55
Sfr303I	CCGCGG	1 cut(s)	114
SgrBI	CCGCGG	1 cut(s)	114
SmlI	CTYRAG	1 cut(s)	211
SmoI	CTYRAG	1 cut(s)	211
Sse9I	AATT	4 cut(s)	188, 348, 712, 817
SsiI	CCGC	3 cut(s)	111, 113, 133
SspDI	GGCGCC	1 cut(s)	53
SspI	AATATT	1 cut(s)	447
SstI	GAGCTC	1 cut(s)	842
StyD4I	CCNGG	6 cut(s)	82, 244, 390, 395, 494, 717
StyI	CCWWGG	3 cut(s)	183, 538, 855
TaaI	ACNGT	3 cut(s)	435, 651, 742
TaqI	TCGA	1 cut(s)	194
TasI	AATT	4 cut(s)	188, 348, 712, 817
TatI	WGTACW	1 cut(s)	578
TfiI	GAWTC	1 cut(s)	29
Tru1I	TTAA	3 cut(s)	629, 665, 833
Tru9I	TTAA	3 cut(s)	629, 665, 833
TscAI	CASTG	4 cut(s)	84, 611, 680, 747
TseI	GCWGC	1 cut(s)	484
TspGWI	ACGGA	2 cut(s)	41, 134
TspRI	CASTG	4 cut(s)	84, 611, 680, 747
VspI	ATTAAT	1 cut(s)	833
XapI	RAATTY	2 cut(s)	188, 712
XmiI	GTMKAC	1 cut(s)	523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.