Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001460

Physical Location & Seq

Genomic Coordinates Forward (+)

4732454 .. 4733705

Gene Structure 1252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG055500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGACCAGATCGAGCACAAGTTAACCGTGCAAGGCCCAAGGCTCCATGTGGCTACATCGGAACAAGAACCAGGTGGCAGGGCAGAATCTGATTTTGGACGCCTTGATGCGAAAACAGTTATTCGCAATGTGTACATTCTTTTCTCGAGGAGTGAAATACCAATAGCTGCAGAAAACCAGGAGATCATGGACTTGATGGACTCGTCTATGCCTCATCCCCCTTGGTTCACTGAGGAAGATCTTGAAGCATATGGAAAGTTGTATGAGAAATTTGGTTTCCAAACCGCATTGCAGCCTCCATATAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0001676 GO:0002532 GO:0002538 GO:0002539 GO:0003008 GO:0003013 GO:0003674 GO:0003824 GO:0004301 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006082 GO:0006629 GO:0006631 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0006954 GO:0007600 GO:0008015 GO:0008150 GO:0008152 GO:0008217 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0016801 GO:0016803 GO:0019233 GO:0019752 GO:0030258 GO:0032501 GO:0032787 GO:0033559 GO:0042577 GO:0042578 GO:0042579 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043651 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045777 GO:0046839 GO:0046872 GO:0050877 GO:0050896 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

102

Amino Acids

11.71

Weight (kDa)

4.82

Isoelectric Point (pI)

57.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001460)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g05700 FvH4_3g04781 FvH4_3g04781 FvH4_3g04781 FvH4_3g04784 FvH4_3g04784 FvH4_3g04790 FvH4_3g04790 FvH4_3g04790
malus_domestica	MD05G1316900.v1.1 MD05G1317400.v1.1 MD10G1297200.v1.1
prunus_persica	Prupe.4G043200_v2.0.a1 Prupe.4G043200_v2.0.a1
pyrus_communis	pycom05g29400 pycom10g25010 pycom10g25060
rosa_chinensis	RchiOBHm_Chr5g0007821 RchiOBHm_Chr5g0007841 RchiOBHm_Chr5g0007871 RchiOBHm_Chr5g0007881
rosa_laevigata	RLG00000031499 RLG00000031500 RLG00000031501
rosa_multiflora	Rmu_co8472583.1_g000001 Rmu_sc0005098.1_g000007 Rmu_sc0005098.1_g000012
rosa_roxburghii	Rroxscaffold_1G00068550 Rroxscaffold_1G00068560 Rroxscaffold_1G00068580
rosa_rugosa	Rorug04G0430600 Rorug04G0430600 Rorug04G0430600 Rorug04G0430600 Rorug04G0430700 Rorug04G0430800
rosa_samantha	Rh5AG059200 Rh5AG059300 Rh5AG059600 Rh5AG059700 Rh5BG056200 Rh5BG056300 Rh5BG056400 Rh5BG056500 Rh5CG066000 Rh5CG066100 Rh5CG066400 Rh5DG055300 Rh5DG055500
rosa_wichuraiana	Rw5G006050 Rw5G006060 Rw5G006070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	285
AcsI	RAATTY	1 cut(s)	269
AcyI	GRCGYC	1 cut(s)	100
AfaI	GTAC	1 cut(s)	134
AgsI	TTSAA	1 cut(s)	245
AjnI	CCWGG	2 cut(s)	70, 177
AjuI	GAANNNNNNNTTGG	2 cut(s)	78, 110
AluBI	AGCT	1 cut(s)	167
AluI	AGCT	1 cut(s)	167
Alw21I	GWGCWC	1 cut(s)	18
AlwNI	CAGNNNCTG	1 cut(s)	89
Ama87I	CYCGRG	1 cut(s)	145
AoxI	GGCC	1 cut(s)	34
ApeKI	GCWGC	2 cut(s)	167, 292
ApoI	RAATTY	1 cut(s)	269
AspS9I	GGNCC	2 cut(s)	4, 35
AvaI	CYCGRG	1 cut(s)	145
AvaII	GGWCC	1 cut(s)	4
Bbv12I	GWGCWC	1 cut(s)	18
BbvI	GCAGC	2 cut(s)	154, 304
BccI	CCATC	1 cut(s)	190
BciT130I	CCWGG	2 cut(s)	72, 179
BfmI	CTRYAG	1 cut(s)	168
BglII	AGATCT	1 cut(s)	238
BisI	GCNGC	2 cut(s)	168, 293
BlsI	GCNGC	2 cut(s)	169, 294
Bme1390I	CCNGG	2 cut(s)	72, 179
Bme18I	GGWCC	1 cut(s)	4
BmeT110I	CYCGRG	1 cut(s)	145
BmgT120I	GGNCC	2 cut(s)	4, 35
BmiI	GGNNCC	1 cut(s)	44
BmrFI	CCNGG	2 cut(s)	72, 179
BmsI	GCATC	1 cut(s)	97
BsaHI	GRCGYC	1 cut(s)	100
BsaJI	CCNNGG	2 cut(s)	38, 221
Bse3DI	GCAATG	2 cut(s)	133, 287
BseBI	CCWGG	2 cut(s)	72, 179
BseDI	CCNNGG	2 cut(s)	38, 221
BseGI	GGATG	1 cut(s)	214
BseMI	GCAATG	2 cut(s)	133, 287
BseMII	CTCAG	1 cut(s)	222
BseRI	GAGGAG	1 cut(s)	163
BseXI	GCAGC	2 cut(s)	154, 304
BshFI	GGCC	1 cut(s)	36
BsiHKAI	GWGCWC	1 cut(s)	18
BsiHKCI	CYCGRG	1 cut(s)	145
BsnI	GGCC	1 cut(s)	36
BsoBI	CYCGRG	1 cut(s)	145
Bsp1286I	GDGCHC	1 cut(s)	18
Bsp1407I	TGTACA	1 cut(s)	132
Bsp143I	GATC	3 cut(s)	9, 183, 238
BspACI	CCGC	1 cut(s)	285
BspANI	GGCC	1 cut(s)	36
BspCNI	CTCAG	1 cut(s)	223
BspLI	GGNNCC	1 cut(s)	44
BspMAI	CTGCAG	1 cut(s)	172
BsrDI	GCAATG	2 cut(s)	133, 287
BsrGI	TGTACA	1 cut(s)	132
BssECI	CCNNGG	2 cut(s)	38, 221
BssMI	GATC	3 cut(s)	9, 183, 238
BssNI	GRCGYC	1 cut(s)	100
BssT1I	CCWWGG	2 cut(s)	38, 221
Bst2UI	CCWGG	2 cut(s)	72, 179
Bst4CI	ACNGT	2 cut(s)	28, 118
BstACI	GRCGYC	1 cut(s)	100
BstAUI	TGTACA	1 cut(s)	132
BstDEI	CTNAG	1 cut(s)	231
BstF5I	GGATG	1 cut(s)	214
BstKTI	GATC	3 cut(s)	12, 186, 241
BstMBI	GATC	3 cut(s)	9, 183, 238
BstNI	CCWGG	2 cut(s)	72, 179
BstSCI	CCNGG	2 cut(s)	70, 177
BstSFI	CTRYAG	1 cut(s)	168
BstV1I	GCAGC	2 cut(s)	154, 304
BstX2I	RGATCY	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	238
BsuRI	GGCC	1 cut(s)	36
BtsCI	GGATG	1 cut(s)	214
BtsIMutI	CAGTG	1 cut(s)	228
CaiI	CAGNNNCTG	1 cut(s)	89
Cfr13I	GGNCC	2 cut(s)	4, 35
CseI	GACGC	1 cut(s)	108
CsiI	ACCWGGT	1 cut(s)	70
Csp6I	GTAC	1 cut(s)	133
CviAII	CATG	2 cut(s)	47, 187
CviJI	RGCY	5 cut(s)	36, 43, 53, 167, 295
CviKI_1	RGCY	5 cut(s)	36, 43, 53, 167, 295
CviQI	GTAC	1 cut(s)	133
DdeI	CTNAG	1 cut(s)	231
DpnI	GATC	3 cut(s)	11, 185, 240
DpnII	GATC	3 cut(s)	9, 183, 238
Eco130I	CCWWGG	2 cut(s)	38, 221
Eco47I	GGWCC	1 cut(s)	4
Eco88I	CYCGRG	1 cut(s)	145
EcoRII	CCWGG	2 cut(s)	70, 177
EcoT14I	CCWWGG	2 cut(s)	38, 221
ErhI	CCWWGG	2 cut(s)	38, 221
FaeI	CATG	2 cut(s)	50, 190
FaiI	YATR	8 cut(s)	48, 188, 209, 250, 252, 264, 301, 303
FatI	CATG	2 cut(s)	46, 186
FauNDI	CATATG	1 cut(s)	250
Fnu4HI	GCNGC	2 cut(s)	168, 293
FokI	GGATG	1 cut(s)	201
Fsp4HI	GCNGC	2 cut(s)	168, 293
GluI	GCNGC	2 cut(s)	168, 293
HaeIII	GGCC	1 cut(s)	36
HgaI	GACGC	1 cut(s)	108
Hin1I	GRCGYC	1 cut(s)	100
Hin1II	CATG	2 cut(s)	50, 190
HincII	GTYRAC	1 cut(s)	24
HindII	GTYRAC	1 cut(s)	24
HinfI	GANTC	2 cut(s)	86, 200
HpaI	GTTAAC	1 cut(s)	24
Hpy166II	GTNNAC	3 cut(s)	24, 133, 228
Hpy188I	TCNGA	2 cut(s)	61, 91
Hpy188III	TCNNGA	2 cut(s)	145, 242
Hpy8I	GTNNAC	3 cut(s)	24, 133, 228
HpyCH4III	ACNGT	2 cut(s)	28, 118
HpyCH4V	TGCA	3 cut(s)	31, 170, 292
HpyF3I	CTNAG	1 cut(s)	231
Hsp92I	GRCGYC	1 cut(s)	100
Hsp92II	CATG	2 cut(s)	50, 190
KspAI	GTTAAC	1 cut(s)	24
Kzo9I	GATC	3 cut(s)	9, 183, 238
LmnI	GCTCC	1 cut(s)	48
LpnPI	CCDG	6 cut(s)	20, 57, 64, 84, 164, 191
Lsp1109I	GCAGC	2 cut(s)	154, 304
LweI	GCATC	1 cut(s)	97
MabI	ACCWGGT	1 cut(s)	70
MalI	GATC	3 cut(s)	11, 185, 240
MboI	GATC	3 cut(s)	9, 183, 238
MboII	GAAGA	1 cut(s)	248
MflI	RGATCY	1 cut(s)	238
MhlI	GDGCHC	1 cut(s)	18
MluCI	AATT	1 cut(s)	269
MlyI	GAGTC	1 cut(s)	194
MnlI	CCTC	4 cut(s)	141, 222, 226, 306
MseI	TTAA	1 cut(s)	23
MspR9I	CCNGG	2 cut(s)	72, 179
MvaI	CCWGG	2 cut(s)	72, 179
NdeI	CATATG	1 cut(s)	250
NdeII	GATC	3 cut(s)	9, 183, 238
NlaIII	CATG	2 cut(s)	50, 190
NlaIV	GGNNCC	1 cut(s)	44
PaeR7I	CTCGAG	1 cut(s)	145
PfeI	GAWTC	1 cut(s)	86
PkrI	GCNGC	2 cut(s)	169, 294
PleI	GAGTC	1 cut(s)	194
PpsI	GAGTC	1 cut(s)	194
Psp6I	CCWGG	2 cut(s)	70, 177
PspGI	CCWGG	2 cut(s)	70, 177
PspN4I	GGNNCC	1 cut(s)	44
PspPI	GGNCC	2 cut(s)	4, 35
PstI	CTGCAG	1 cut(s)	172
PstNI	CAGNNNCTG	1 cut(s)	89
PsuI	RGATCY	1 cut(s)	238
RsaI	GTAC	1 cut(s)	134
RsaNI	GTAC	1 cut(s)	133
SaqAI	TTAA	1 cut(s)	23
SatI	GCNGC	2 cut(s)	168, 293
Sau3AI	GATC	3 cut(s)	9, 183, 238
Sau96I	GGNCC	2 cut(s)	4, 35
SchI	GAGTC	1 cut(s)	194
ScrFI	CCNGG	2 cut(s)	72, 179
SduI	GDGCHC	1 cut(s)	18
SetI	ASST	3 cut(s)	76, 169, 308
SexAI	ACCWGGT	1 cut(s)	70
SfaNI	GCATC	1 cut(s)	97
SfcI	CTRYAG	1 cut(s)	168
Sfr274I	CTCGAG	1 cut(s)	145
SinI	GGWCC	1 cut(s)	4
SlaI	CTCGAG	1 cut(s)	145
SmlI	CTYRAG	1 cut(s)	145
SmoI	CTYRAG	1 cut(s)	145
Sse9I	AATT	1 cut(s)	269
SsiI	CCGC	1 cut(s)	285
StyD4I	CCNGG	2 cut(s)	70, 177
StyI	CCWWGG	2 cut(s)	38, 221
TaaI	ACNGT	2 cut(s)	28, 118
TaqI	TCGA	2 cut(s)	12, 146
TasI	AATT	1 cut(s)	269
TatI	WGTACW	1 cut(s)	132
TfiI	GAWTC	1 cut(s)	86
Tru1I	TTAA	1 cut(s)	23
Tru9I	TTAA	1 cut(s)	23
TscAI	CASTG	1 cut(s)	235
TseI	GCWGC	2 cut(s)	167, 292
TspRI	CASTG	1 cut(s)	235
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	269
XhoI	CTCGAG	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.