Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001460

Physical Location & Seq

Genomic Coordinates Reverse (-)

44623431 .. 44624102

Gene Structure 672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1317400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGAGAGTGTTTTCCTCGTGGGAAAAGAATTTTGGAGGTCGGCCAACGTACTTATTTGCCCTTGCGTACCTAGATAGGGTCTTGGGAGTTATAACAATCGGAGTGCCAATCGTGCCACTAGGCCTTCTAAAATTCGTTAAAAAGCTCCCTGAGGGCTTATACATTTCAAGATGGCAGGAACCTGGCCGGGCAGAGGCTGATTTCAGGCGCTTTGATGCGAAAACAGTTGTTTGGAACATTTACATCCTTTTCTCCAGAAGCAAAATACCAATAGCTGTAGAAAACCAGGAGATCATGGACTTGGTGGATCCATTTGACCCTCTTCCCCCTTGGTTCACCAAGGAAGATCTTGCTGCATATGGAGCTCTGTATGAGAAATCGGGCTTCCAAACTGCACTGCACATTCCGTATAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0001676 GO:0002532 GO:0002538 GO:0002539 GO:0003008 GO:0003013 GO:0003674 GO:0003824 GO:0004301 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006082 GO:0006629 GO:0006631 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0006954 GO:0007600 GO:0008015 GO:0008150 GO:0008152 GO:0008217 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0016801 GO:0016803 GO:0019233 GO:0019752 GO:0030258 GO:0032501 GO:0032787 GO:0033559 GO:0042577 GO:0042578 GO:0042579 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043651 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045777 GO:0046839 GO:0046872 GO:0050877 GO:0050896 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

139

Amino Acids

15.91

Weight (kDa)

8.86

Isoelectric Point (pI)

43.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001460)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g05700 FvH4_3g04781 FvH4_3g04781 FvH4_3g04781 FvH4_3g04784 FvH4_3g04784 FvH4_3g04790 FvH4_3g04790 FvH4_3g04790
malus_domestica	MD05G1316900.v1.1 MD05G1317400.v1.1 MD10G1297200.v1.1
prunus_persica	Prupe.4G043200_v2.0.a1 Prupe.4G043200_v2.0.a1
pyrus_communis	pycom05g29400 pycom10g25010 pycom10g25060
rosa_chinensis	RchiOBHm_Chr5g0007821 RchiOBHm_Chr5g0007841 RchiOBHm_Chr5g0007871 RchiOBHm_Chr5g0007881
rosa_laevigata	RLG00000031499 RLG00000031500 RLG00000031501
rosa_multiflora	Rmu_co8472583.1_g000001 Rmu_sc0005098.1_g000007 Rmu_sc0005098.1_g000012
rosa_roxburghii	Rroxscaffold_1G00068550 Rroxscaffold_1G00068560 Rroxscaffold_1G00068580
rosa_rugosa	Rorug04G0430600 Rorug04G0430600 Rorug04G0430600 Rorug04G0430600 Rorug04G0430700 Rorug04G0430800
rosa_samantha	Rh5AG059200 Rh5AG059300 Rh5AG059600 Rh5AG059700 Rh5BG056200 Rh5BG056300 Rh5BG056400 Rh5BG056500 Rh5CG066000 Rh5CG066100 Rh5CG066400 Rh5DG055300 Rh5DG055500
rosa_wichuraiana	Rw5G006050 Rw5G006060 Rw5G006070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	92
AclWI	GGATC	2 cut(s)	302, 315
AcoI	YGGCCR	2 cut(s)	41, 184
AcsI	RAATTY	2 cut(s)	28, 131
AfaI	GTAC	2 cut(s)	50, 68
AfiI	CCNNNNNNNGG	2 cut(s)	76, 193
AgsI	TTSAA	1 cut(s)	168
AjnI	CCWGG	2 cut(s)	181, 285
AjuI	GAANNNNNNNTTGG	2 cut(s)	15, 47
AluBI	AGCT	3 cut(s)	145, 275, 365
AluI	AGCT	3 cut(s)	145, 275, 365
Alw21I	GWGCWC	1 cut(s)	367
AlwI	GGATC	2 cut(s)	302, 315
AlwNI	CAGNNNCTG	1 cut(s)	197
AoxI	GGCC	3 cut(s)	41, 121, 184
ApeKI	GCWGC	1 cut(s)	353
ApoI	RAATTY	2 cut(s)	28, 131
AspLEI	GCGC	1 cut(s)	210
AsuC2I	CCSGG	1 cut(s)	188
AsuHPI	GGTGA	1 cut(s)	328
AxyI	CCTNAGG	1 cut(s)	150
BamHI	GGATCC	1 cut(s)	307
BanII	GRGCYC	1 cut(s)	367
BauI	CACGAG	1 cut(s)	16
Bbv12I	GWGCWC	1 cut(s)	367
BbvI	GCAGC	1 cut(s)	340
BccI	CCATC	1 cut(s)	165
BciT130I	CCWGG	2 cut(s)	183, 287
BcnI	CCSGG	1 cut(s)	188
BfaI	CTAG	2 cut(s)	71, 119
BfmI	CTRYAG	1 cut(s)	276
BfoI	RGCGCY	1 cut(s)	211
BglII	AGATCT	1 cut(s)	346
BisI	GCNGC	1 cut(s)	354
BlsI	GCNGC	1 cut(s)	355
Bme1390I	CCNGG	3 cut(s)	183, 188, 287
BmiI	GGNNCC	2 cut(s)	180, 309
BmrFI	CCNGG	3 cut(s)	183, 188, 287
BmsI	GCATC	1 cut(s)	205
BpmI	CTGGAG	1 cut(s)	238
BpuMI	CCSGG	1 cut(s)	188
BsaJI	CCNNGG	2 cut(s)	329, 339
Bsc4I	CCNNNNNNNGG	2 cut(s)	76, 193
Bse21I	CCTNAGG	1 cut(s)	150
BseBI	CCWGG	2 cut(s)	183, 287
BseDI	CCNNGG	2 cut(s)	329, 339
BseGI	GGATG	1 cut(s)	243
BseLI	CCNNNNNNNGG	2 cut(s)	76, 193
BseMII	CTCAG	1 cut(s)	141
BseXI	GCAGC	1 cut(s)	340
BsgI	GTGCAG	2 cut(s)	378, 383
BshFI	GGCC	3 cut(s)	43, 123, 186
BsiHKAI	GWGCWC	1 cut(s)	367
BsiSI	CCGG	1 cut(s)	187
BslI	CCNNNNNNNGG	2 cut(s)	76, 193
BsnI	GGCC	3 cut(s)	43, 123, 186
Bsp1286I	GDGCHC	1 cut(s)	367
Bsp143I	GATC	3 cut(s)	291, 307, 346
BspANI	GGCC	3 cut(s)	43, 123, 186
BspCNI	CTCAG	1 cut(s)	142
BspLI	GGNNCC	2 cut(s)	180, 309
BspPI	GGATC	2 cut(s)	302, 315
BssECI	CCNNGG	2 cut(s)	329, 339
BssMI	GATC	3 cut(s)	291, 307, 346
BssSI	CACGAG	1 cut(s)	16
BssT1I	CCWWGG	2 cut(s)	329, 339
Bst2BI	CACGAG	1 cut(s)	16
Bst2UI	CCWGG	2 cut(s)	183, 287
Bst4CI	ACNGT	1 cut(s)	226
Bst6I	CTCTTC	1 cut(s)	327
BstDEI	CTNAG	1 cut(s)	150
BstF5I	GGATG	1 cut(s)	243
BstH2I	RGCGCY	1 cut(s)	211
BstHHI	GCGC	1 cut(s)	210
BstKTI	GATC	3 cut(s)	294, 310, 349
BstMBI	GATC	3 cut(s)	291, 307, 346
BstMWI	GCNNNNNNNGC	2 cut(s)	112, 362
BstNI	CCWGG	2 cut(s)	183, 287
BstSCI	CCNGG	3 cut(s)	181, 186, 285
BstSFI	CTRYAG	1 cut(s)	276
BstV1I	GCAGC	1 cut(s)	340
BstX2I	RGATCY	2 cut(s)	307, 346
BstYI	RGATCY	2 cut(s)	307, 346
Bsu36I	CCTNAGG	1 cut(s)	150
BsuRI	GGCC	3 cut(s)	43, 123, 186
BtsCI	GGATG	1 cut(s)	243
BtsI	GCAGTG	1 cut(s)	395
BtsIMutI	CAGTG	1 cut(s)	395
CaiI	CAGNNNCTG	1 cut(s)	197
CfoI	GCGC	1 cut(s)	210
Csp6I	GTAC	2 cut(s)	49, 67
CviAII	CATG	1 cut(s)	295
CviJI	RGCY	9 cut(s)	43, 123, 145, 156, 186, 197, 275, 365, 384
CviKI_1	RGCY	9 cut(s)	43, 123, 145, 156, 186, 197, 275, 365, 384
CviQI	GTAC	2 cut(s)	49, 67
DdeI	CTNAG	1 cut(s)	150
DpnI	GATC	3 cut(s)	293, 309, 348
DpnII	GATC	3 cut(s)	291, 307, 346
EaeI	YGGCCR	2 cut(s)	41, 184
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
Ecl136II	GAGCTC	1 cut(s)	365
Eco130I	CCWWGG	2 cut(s)	329, 339
Eco147I	AGGCCT	1 cut(s)	123
Eco24I	GRGCYC	1 cut(s)	367
Eco53kI	GAGCTC	1 cut(s)	365
Eco81I	CCTNAGG	1 cut(s)	150
EcoICRI	GAGCTC	1 cut(s)	365
EcoRII	CCWGG	2 cut(s)	181, 285
EcoT14I	CCWWGG	2 cut(s)	329, 339
EcoT38I	GRGCYC	1 cut(s)	367
ErhI	CCWWGG	2 cut(s)	329, 339
FaeI	CATG	1 cut(s)	298
FaiI	YATR	7 cut(s)	92, 160, 296, 358, 360, 372, 411
FatI	CATG	1 cut(s)	294
FauNDI	CATATG	1 cut(s)	358
Fnu4HI	GCNGC	1 cut(s)	354
FokI	GGATG	1 cut(s)	230
FriOI	GRGCYC	1 cut(s)	367
Fsp4HI	GCNGC	1 cut(s)	354
FspBI	CTAG	2 cut(s)	71, 119
GlaI	GCGC	1 cut(s)	209
GluI	GCNGC	1 cut(s)	354
GsuI	CTGGAG	1 cut(s)	238
HaeII	RGCGCY	1 cut(s)	211
HaeIII	GGCC	3 cut(s)	43, 123, 186
HapII	CCGG	1 cut(s)	187
HhaI	GCGC	1 cut(s)	210
Hin1II	CATG	1 cut(s)	298
Hin6I	GCGC	1 cut(s)	208
HinP1I	GCGC	1 cut(s)	208
HpaII	CCGG	1 cut(s)	187
HphI	GGTGA	1 cut(s)	328
Hpy166II	GTNNAC	1 cut(s)	336
Hpy188I	TCNGA	1 cut(s)	101
Hpy188III	TCNNGA	2 cut(s)	168, 255
Hpy8I	GTNNAC	1 cut(s)	336
HpyAV	CCTTC	1 cut(s)	134
HpyCH4III	ACNGT	1 cut(s)	226
HpyCH4IV	ACGT	1 cut(s)	47
HpyCH4V	TGCA	3 cut(s)	356, 395, 400
HpyF10VI	GCNNNNNNNGC	2 cut(s)	112, 362
HpyF3I	CTNAG	1 cut(s)	150
HpySE526I	ACGT	1 cut(s)	47
Hsp92II	CATG	1 cut(s)	298
HspAI	GCGC	1 cut(s)	208
Kzo9I	GATC	3 cut(s)	291, 307, 346
LmnI	GCTCC	2 cut(s)	150, 362
LpnPI	CCDG	9 cut(s)	161, 162, 168, 190, 195, 200, 268, 272, 299
Lsp1109I	GCAGC	1 cut(s)	340
LweI	GCATC	1 cut(s)	205
MaeI	CTAG	2 cut(s)	71, 119
MaeII	ACGT	1 cut(s)	47
MalI	GATC	3 cut(s)	293, 309, 348
MboI	GATC	3 cut(s)	291, 307, 346
MboII	GAAGA	2 cut(s)	314, 356
MflI	RGATCY	2 cut(s)	307, 346
MhlI	GDGCHC	1 cut(s)	367
MluCI	AATT	2 cut(s)	28, 131
MnlI	CCTC	5 cut(s)	25, 29, 145, 187, 330
MseI	TTAA	1 cut(s)	138
MspI	CCGG	1 cut(s)	187
MspR9I	CCNGG	3 cut(s)	183, 188, 287
MvaI	CCWGG	2 cut(s)	183, 287
MwoI	GCNNNNNNNGC	2 cut(s)	112, 362
NciI	CCSGG	1 cut(s)	188
NdeI	CATATG	1 cut(s)	358
NdeII	GATC	3 cut(s)	291, 307, 346
NlaIII	CATG	1 cut(s)	298
NlaIV	GGNNCC	2 cut(s)	180, 309
PceI	AGGCCT	1 cut(s)	123
PkrI	GCNGC	1 cut(s)	355
PsiI	TTATAA	1 cut(s)	92
Psp124BI	GAGCTC	1 cut(s)	367
Psp6I	CCWGG	2 cut(s)	181, 285
PspGI	CCWGG	2 cut(s)	181, 285
PspN4I	GGNNCC	2 cut(s)	180, 309
PstNI	CAGNNNCTG	1 cut(s)	197
PsuI	RGATCY	2 cut(s)	307, 346
RsaI	GTAC	2 cut(s)	50, 68
RsaNI	GTAC	2 cut(s)	49, 67
SacI	GAGCTC	1 cut(s)	367
SaqAI	TTAA	1 cut(s)	138
SatI	GCNGC	1 cut(s)	354
Sau3AI	GATC	3 cut(s)	291, 307, 346
ScrFI	CCNGG	3 cut(s)	183, 188, 287
SduI	GDGCHC	1 cut(s)	367
SetI	ASST	8 cut(s)	40, 50, 72, 147, 184, 277, 367, 416
SfaNI	GCATC	1 cut(s)	205
SfcI	CTRYAG	1 cut(s)	276
Sse9I	AATT	2 cut(s)	28, 131
SseBI	AGGCCT	1 cut(s)	123
SspMI	CTAG	2 cut(s)	71, 119
SstI	GAGCTC	1 cut(s)	367
StuI	AGGCCT	1 cut(s)	123
StyD4I	CCNGG	3 cut(s)	181, 186, 285
StyI	CCWWGG	2 cut(s)	329, 339
TaaI	ACNGT	1 cut(s)	226
TaiI	ACGT	1 cut(s)	50
TasI	AATT	2 cut(s)	28, 131
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TscAI	CASTG	1 cut(s)	402
TseI	GCWGC	1 cut(s)	353
TspGWI	ACGGA	1 cut(s)	396
TspRI	CASTG	1 cut(s)	402
XapI	RAATTY	2 cut(s)	28, 131
XspI	CTAG	2 cut(s)	71, 119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.