Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001460

Physical Location & Seq

Genomic Coordinates Forward (+)

58928231 .. 58928680

Gene Structure 450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0430700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGGTTCCAACGAAGACAGTCGAAAACCACCGAAGCGCCGCCGCGCACGGATGAGTGCCATTTTGCCTCAACCCCATATGATTTTCAGGTTCCCAAAGCCTGAAGACTACGACCACCTCGATGACGACGTAGACGATCATCACCCTCCTCTCTCCGAAGAATCCGATGCATGTTTGGAAACTAGTCCCGATCACAATCCTCGTCATGAAAATGGTACTACCACCAGCTCCAGACCTTCAACGGCGTCGTATTTCGATTGTAACTTGTGCTTCAAATCGGAGAGGCAGCCGGTTGTGACAGTGTGCGGGCATTTGTATTGCCACTCTTGCTTGTGCGACTGGCTGCAGTTTGGTCGGAAATGTCCTGTTTGTGAGGCCAAGGTGGTTGACGGACGCATCTTTCCGATTTATCAATGCAGTGGACCGAGACCGAAGACACAATTGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0001676 GO:0002532 GO:0002538 GO:0002539 GO:0003008 GO:0003013 GO:0003674 GO:0003824 GO:0004301 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006082 GO:0006629 GO:0006631 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0006954 GO:0007600 GO:0008015 GO:0008150 GO:0008152 GO:0008217 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0016801 GO:0016803 GO:0019233 GO:0019752 GO:0030258 GO:0032501 GO:0032787 GO:0033559 GO:0042577 GO:0042578 GO:0042579 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043651 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045777 GO:0046839 GO:0046872 GO:0050877 GO:0050896 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

149

Amino Acids

17.02

Weight (kDa)

6.43

Isoelectric Point (pI)

70.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	86 - 128	5.4e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	86 - 124	3.8e-07	Ring finger domain
zf-C3HC4	PF00097	87 - 124	5.9e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	87 - 124	9.3e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_5	PF14634	87 - 125	3.3e-06	zinc-RING finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001460)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g05700 FvH4_3g04781 FvH4_3g04781 FvH4_3g04781 FvH4_3g04784 FvH4_3g04784 FvH4_3g04790 FvH4_3g04790 FvH4_3g04790
malus_domestica	MD05G1316900.v1.1 MD05G1317400.v1.1 MD10G1297200.v1.1
prunus_persica	Prupe.4G043200_v2.0.a1 Prupe.4G043200_v2.0.a1
pyrus_communis	pycom05g29400 pycom10g25010 pycom10g25060
rosa_chinensis	RchiOBHm_Chr5g0007821 RchiOBHm_Chr5g0007841 RchiOBHm_Chr5g0007871 RchiOBHm_Chr5g0007881
rosa_laevigata	RLG00000031499 RLG00000031500 RLG00000031501
rosa_multiflora	Rmu_co8472583.1_g000001 Rmu_sc0005098.1_g000007 Rmu_sc0005098.1_g000012
rosa_roxburghii	Rroxscaffold_1G00068550 Rroxscaffold_1G00068560 Rroxscaffold_1G00068580
rosa_rugosa	Rorug04G0430600 Rorug04G0430600 Rorug04G0430600 Rorug04G0430600 Rorug04G0430700 Rorug04G0430800
rosa_samantha	Rh5AG059200 Rh5AG059300 Rh5AG059600 Rh5AG059700 Rh5BG056200 Rh5BG056300 Rh5BG056400 Rh5BG056500 Rh5CG066000 Rh5CG066100 Rh5CG066400 Rh5DG055300 Rh5DG055500
rosa_wichuraiana	Rw5G006050 Rw5G006060 Rw5G006070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	132
AccII	CGCG	1 cut(s)	45
AciI	CCGC	3 cut(s)	40, 43, 306
AcuI	CTGAAG	1 cut(s)	123
AcyI	GRCGYC	1 cut(s)	245
AfaI	GTAC	1 cut(s)	217
AgsI	TTSAA	2 cut(s)	240, 274
AhlI	ACTAGT	1 cut(s)	182
AjuI	GAANNNNNNNTTGG	1 cut(s)	425
AluBI	AGCT	1 cut(s)	228
AluI	AGCT	1 cut(s)	228
Alw26I	GTCTC	1 cut(s)	421
AoxI	GGCC	1 cut(s)	375
ApeKI	GCWGC	2 cut(s)	286, 343
AspLEI	GCGC	2 cut(s)	39, 47
AspS9I	GGNCC	1 cut(s)	422
AsuHPI	GGTGA	1 cut(s)	134
AvaII	GGWCC	1 cut(s)	422
BbsI	GAAGAC	3 cut(s)	21, 111, 440
BbvI	GCAGC	2 cut(s)	298, 330
BceAI	ACGGC	1 cut(s)	258
BcgI	CGANNNNNNTGC	2 cut(s)	335, 369
BcoDI	GTCTC	1 cut(s)	421
BcuI	ACTAGT	1 cut(s)	182
BfaI	CTAG	1 cut(s)	183
BfmI	CTRYAG	1 cut(s)	344
BfoI	RGCGCY	1 cut(s)	40
BisI	GCNGC	4 cut(s)	40, 43, 287, 344
BlsI	GCNGC	4 cut(s)	41, 44, 288, 345
Bme18I	GGWCC	1 cut(s)	422
BmgT120I	GGNCC	1 cut(s)	422
BmiI	GGNNCC	2 cut(s)	7, 92
BmsI	GCATC	2 cut(s)	157, 405
BpiI	GAAGAC	3 cut(s)	21, 111, 440
BpmI	CTGGAG	1 cut(s)	214
BsaBI	GATNNNNATC	1 cut(s)	195
BsaHI	GRCGYC	1 cut(s)	245
BsaI	GGTCTC	1 cut(s)	421
BsaJI	CCNNGG	1 cut(s)	378
Bse118I	RCCGGY	1 cut(s)	289
Bse1I	ACTGG	1 cut(s)	344
Bse8I	GATNNNNATC	1 cut(s)	195
BseDI	CCNNGG	1 cut(s)	378
BseGI	GGATG	1 cut(s)	57
BseJI	GATNNNNATC	1 cut(s)	195
BseNI	ACTGG	1 cut(s)	344
BseRI	GAGGAG	1 cut(s)	138
BseXI	GCAGC	2 cut(s)	298, 330
Bsh1236I	CGCG	1 cut(s)	45
BshFI	GGCC	1 cut(s)	377
BsiSI	CCGG	1 cut(s)	290
BslFI	GGGAC	1 cut(s)	171
BsmAI	GTCTC	1 cut(s)	421
BsmFI	GGGAC	1 cut(s)	171
BsnI	GGCC	1 cut(s)	377
Bso31I	GGTCTC	1 cut(s)	421
Bsp143I	GATC	2 cut(s)	136, 190
BspACI	CCGC	3 cut(s)	40, 43, 306
BspANI	GGCC	1 cut(s)	377
BspFNI	CGCG	1 cut(s)	45
BspHI	TCATGA	1 cut(s)	205
BspLI	GGNNCC	2 cut(s)	7, 92
BspMAI	CTGCAG	1 cut(s)	348
BspTNI	GGTCTC	1 cut(s)	421
BsrFI	RCCGGY	1 cut(s)	289
BsrI	ACTGG	1 cut(s)	344
BssAI	RCCGGY	1 cut(s)	289
BssECI	CCNNGG	1 cut(s)	378
BssMI	GATC	2 cut(s)	136, 190
BssNI	GRCGYC	1 cut(s)	245
BssT1I	CCWWGG	1 cut(s)	378
Bst4CI	ACNGT	2 cut(s)	20, 301
BstACI	GRCGYC	1 cut(s)	245
BstC8I	GCNNGC	1 cut(s)	308
BstF5I	GGATG	1 cut(s)	57
BstFNI	CGCG	1 cut(s)	45
BstH2I	RGCGCY	1 cut(s)	40
BstHHI	GCGC	2 cut(s)	39, 47
BstKTI	GATC	2 cut(s)	139, 193
BstMAI	GTCTC	1 cut(s)	421
BstMBI	GATC	2 cut(s)	136, 190
BstMWI	GCNNNNNNNGC	1 cut(s)	327
BstNSI	RCATGY	1 cut(s)	174
BstSFI	CTRYAG	1 cut(s)	344
BstUI	CGCG	1 cut(s)	45
BstV1I	GCAGC	2 cut(s)	298, 330
BstV2I	GAAGAC	3 cut(s)	21, 111, 440
BsuRI	GGCC	1 cut(s)	377
BtsCI	GGATG	1 cut(s)	57
BtsI	GCAGTG	1 cut(s)	424
BtsIMutI	CAGTG	2 cut(s)	306, 424
Cac8I	GCNNGC	1 cut(s)	308
CciI	TCATGA	1 cut(s)	205
CfoI	GCGC	2 cut(s)	39, 47
Cfr10I	RCCGGY	1 cut(s)	289
Cfr13I	GGNCC	1 cut(s)	422
CseI	GACGC	2 cut(s)	234, 402
Csp6I	GTAC	1 cut(s)	216
CviAII	CATG	2 cut(s)	171, 206
CviJI	RGCY	5 cut(s)	100, 228, 289, 343, 377
CviKI_1	RGCY	5 cut(s)	100, 228, 289, 343, 377
CviQI	GTAC	1 cut(s)	216
DpnI	GATC	2 cut(s)	138, 192
DpnII	GATC	2 cut(s)	136, 190
Eco130I	CCWWGG	1 cut(s)	378
Eco31I	GGTCTC	1 cut(s)	421
Eco47I	GGWCC	1 cut(s)	422
Eco57I	CTGAAG	1 cut(s)	123
EcoT14I	CCWWGG	1 cut(s)	378
EcoT22I	ATGCAT	1 cut(s)	172
ErhI	CCWWGG	1 cut(s)	378
FaeI	CATG	2 cut(s)	174, 209
FaiI	YATR	4 cut(s)	78, 80, 172, 207
FaqI	GGGAC	1 cut(s)	171
FatI	CATG	2 cut(s)	170, 205
FauI	CCCGC	1 cut(s)	299
FauNDI	CATATG	1 cut(s)	78
FblI	GTMKAC	1 cut(s)	132
Fnu4HI	GCNGC	4 cut(s)	40, 43, 287, 344
FokI	GGATG	1 cut(s)	64
Fsp4HI	GCNGC	4 cut(s)	40, 43, 287, 344
FspBI	CTAG	1 cut(s)	183
GlaI	GCGC	2 cut(s)	38, 46
GluI	GCNGC	4 cut(s)	40, 43, 287, 344
GsuI	CTGGAG	1 cut(s)	214
HaeII	RGCGCY	1 cut(s)	40
HaeIII	GGCC	1 cut(s)	377
HapII	CCGG	1 cut(s)	290
HgaI	GACGC	2 cut(s)	234, 402
HhaI	GCGC	2 cut(s)	39, 47
Hin1I	GRCGYC	1 cut(s)	245
Hin1II	CATG	2 cut(s)	174, 209
Hin6I	GCGC	2 cut(s)	37, 45
HinP1I	GCGC	2 cut(s)	37, 45
HincII	GTYRAC	1 cut(s)	388
HindII	GTYRAC	1 cut(s)	388
HinfI	GANTC	1 cut(s)	161
HpaII	CCGG	1 cut(s)	290
HphI	GGTGA	1 cut(s)	134
Hpy166II	GTNNAC	3 cut(s)	133, 388, 422
Hpy188I	TCNGA	5 cut(s)	157, 166, 280, 357, 405
Hpy188III	TCNNGA	3 cut(s)	188, 206, 231
Hpy8I	GTNNAC	3 cut(s)	133, 388, 422
Hpy99I	CGWCG	2 cut(s)	131, 250
HpyAV	CCTTC	1 cut(s)	246
HpyCH4III	ACNGT	2 cut(s)	20, 301
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	3 cut(s)	170, 346, 417
HpyF10VI	GCNNNNNNNGC	1 cut(s)	327
HpySE526I	ACGT	1 cut(s)	129
Hsp92I	GRCGYC	1 cut(s)	245
Hsp92II	CATG	2 cut(s)	174, 209
HspAI	GCGC	2 cut(s)	37, 45
Kzo9I	GATC	2 cut(s)	136, 190
LmnI	GCTCC	1 cut(s)	233
LpnPI	CCDG	7 cut(s)	73, 114, 238, 244, 303, 325, 378
Lsp1109I	GCAGC	2 cut(s)	298, 330
LweI	GCATC	2 cut(s)	157, 405
MaeI	CTAG	1 cut(s)	183
MaeII	ACGT	1 cut(s)	129
MaeIII	GTNAC	2 cut(s)	260, 295
MalI	GATC	2 cut(s)	138, 192
MboI	GATC	2 cut(s)	136, 190
MboII	GAAGA	4 cut(s)	26, 116, 170, 445
MfeI	CAATTG	1 cut(s)	440
MluCI	AATT	1 cut(s)	440
MmeI	TCCRAC	2 cut(s)	33, 335
MnlI	CCTC	7 cut(s)	78, 128, 156, 159, 210, 276, 367
Mph1103I	ATGCAT	1 cut(s)	172
MslI	CAYNNNNRTG	2 cut(s)	120, 210
MspI	CCGG	1 cut(s)	290
MunI	CAATTG	1 cut(s)	440
MvnI	CGCG	1 cut(s)	45
MwoI	GCNNNNNNNGC	1 cut(s)	327
NdeI	CATATG	1 cut(s)	78
NdeII	GATC	2 cut(s)	136, 190
NlaIII	CATG	2 cut(s)	174, 209
NlaIV	GGNNCC	2 cut(s)	7, 92
NmuCI	GTSAC	1 cut(s)	295
NsiI	ATGCAT	1 cut(s)	172
NspI	RCATGY	1 cut(s)	174
PagI	TCATGA	1 cut(s)	205
PcsI	WCGNNNNNNNCGW	3 cut(s)	117, 126, 132
PfeI	GAWTC	1 cut(s)	161
PkrI	GCNGC	4 cut(s)	41, 44, 288, 345
PspN4I	GGNNCC	2 cut(s)	7, 92
PspPI	GGNCC	1 cut(s)	422
PstI	CTGCAG	1 cut(s)	348
RsaI	GTAC	1 cut(s)	217
RsaNI	GTAC	1 cut(s)	216
RseI	CAYNNNNRTG	2 cut(s)	120, 210
SatI	GCNGC	4 cut(s)	40, 43, 287, 344
Sau3AI	GATC	2 cut(s)	136, 190
Sau96I	GGNCC	1 cut(s)	422
SetI	ASST	6 cut(s)	92, 120, 132, 230, 238, 384
SfaNI	GCATC	2 cut(s)	157, 405
SfcI	CTRYAG	1 cut(s)	344
SinI	GGWCC	1 cut(s)	422
SmiMI	CAYNNNNRTG	2 cut(s)	120, 210
SpeI	ACTAGT	1 cut(s)	182
Sse9I	AATT	1 cut(s)	440
SsiI	CCGC	3 cut(s)	40, 43, 306
SspMI	CTAG	1 cut(s)	183
StyI	CCWWGG	1 cut(s)	378
TaaI	ACNGT	2 cut(s)	20, 301
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	3 cut(s)	22, 120, 255
TaqII	GACCGA	2 cut(s)	439, 445
TasI	AATT	1 cut(s)	440
TauI	GCSGC	2 cut(s)	42, 45
TfiI	GAWTC	1 cut(s)	161
TscAI	CASTG	2 cut(s)	306, 424
TseFI	GTSAC	1 cut(s)	295
TseI	GCWGC	2 cut(s)	286, 343
Tsp45I	GTSAC	1 cut(s)	295
TspDTI	ATGAA	1 cut(s)	222
TspGWI	ACGGA	2 cut(s)	64, 405
TspRI	CASTG	2 cut(s)	306, 424
VpaK11BI	GGWCC	1 cut(s)	422
XceI	RCATGY	1 cut(s)	174
XmiI	GTMKAC	1 cut(s)	132
XspI	CTAG	1 cut(s)	183
Zsp2I	ATGCAT	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.