Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001460

Physical Location & Seq

Genomic Coordinates Forward (+)

5096673 .. 5098545

Gene Structure 1873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG059600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGATCGCTCTGGCCAACGCCGGGTTCCGGGCCATAGCCCCGGACTACCGAGGATACGGACTCTCCGACCCGCCTCCCCAACCCGAGACGGCCACCTTCCTTGACCTTGACAATGACCTCCTTGCTATTCTTGATGCCCTTGCCATTCCTAAGGTTTTCCTCATCGGAAAAGATTTTGGAGCTTGGCCGGCGTACATATTTGCCGGTCTGCACCCAGAAAGGACCTTGGGAGTTGTAACAATGGGAGTGCCATACATGCCAAAGTCAAGTAGTCCCCAGTTCATTAACCACCTTCCTGAAGGTTTCTATATTTCAAGATGGCAGGAACCGGGTGGCAGGGCAGAAGCTGATTTTGGACGCCTTGATGCGAAAACAGTTATCCGCAATGTGTACATTCTTTTCTCGAGGAGTGAAATACCAATAGCTGCAGAAAACCAGGAGATCATGGACTTGGTGGACTCGTCTACGCCTCTTCCCCCTTGGTTCACTGAGGAAGATCTTGAAGCATATGGAAAGTTGTACGAGAAATCTGGTTTCCAAACAGCATTGCAACTTCCATATAGGGCAATGAAAGATGGCTTGGGCATACCTGATTCCACTATTGAAGTTCCAGCTCTTTTTATAATGGGAAAAAAGGATTATGTATACGAATTTCCAGGGATGAAAGATTACATAAACAGTGAAAAGCTGAAAGAGTTTGTCCCGGATTTGGAGATTGTATTTCTGCCAGAAGGAACACATTTTGTTCACGAACAATCACCTGAACAAGTTAATGAGCTCATCCTCACGTTTCTCCAAAAGCACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0001676 GO:0002532 GO:0002538 GO:0002539 GO:0003008 GO:0003013 GO:0003674 GO:0003824 GO:0004301 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006082 GO:0006629 GO:0006631 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0006954 GO:0007600 GO:0008015 GO:0008150 GO:0008152 GO:0008217 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0016801 GO:0016803 GO:0019233 GO:0019752 GO:0030258 GO:0032501 GO:0032787 GO:0033559 GO:0042577 GO:0042578 GO:0042579 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043651 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045777 GO:0046839 GO:0046872 GO:0050877 GO:0050896 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

269

Amino Acids

30.2

Weight (kDa)

4.67

Isoelectric Point (pI)

51.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	3 - 252	1.9e-17	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	3 - 259	3.5e-11	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001460)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g05700 FvH4_3g04781 FvH4_3g04781 FvH4_3g04781 FvH4_3g04784 FvH4_3g04784 FvH4_3g04790 FvH4_3g04790 FvH4_3g04790
malus_domestica	MD05G1316900.v1.1 MD05G1317400.v1.1 MD10G1297200.v1.1
prunus_persica	Prupe.4G043200_v2.0.a1 Prupe.4G043200_v2.0.a1
pyrus_communis	pycom05g29400 pycom10g25010 pycom10g25060
rosa_chinensis	RchiOBHm_Chr5g0007821 RchiOBHm_Chr5g0007841 RchiOBHm_Chr5g0007871 RchiOBHm_Chr5g0007881
rosa_laevigata	RLG00000031499 RLG00000031500 RLG00000031501
rosa_multiflora	Rmu_co8472583.1_g000001 Rmu_sc0005098.1_g000007 Rmu_sc0005098.1_g000012
rosa_roxburghii	Rroxscaffold_1G00068550 Rroxscaffold_1G00068560 Rroxscaffold_1G00068580
rosa_rugosa	Rorug04G0430600 Rorug04G0430600 Rorug04G0430600 Rorug04G0430600 Rorug04G0430700 Rorug04G0430800
rosa_samantha	Rh5AG059200 Rh5AG059300 Rh5AG059600 Rh5AG059700 Rh5BG056200 Rh5BG056300 Rh5BG056400 Rh5BG056500 Rh5CG066000 Rh5CG066100 Rh5CG066400 Rh5DG055300 Rh5DG055500
rosa_wichuraiana	Rw5G006050 Rw5G006060 Rw5G006070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	623
AccI	GTMKAC	2 cut(s)	464, 645
AciI	CCGC	2 cut(s)	71, 382
AcoI	YGGCCR	3 cut(s)	12, 90, 185
AcsI	RAATTY	1 cut(s)	650
AcuI	CTGAAG	1 cut(s)	318
AcyI	GRCGYC	1 cut(s)	358
AfaI	GTAC	3 cut(s)	194, 392, 521
AfiI	CCNNNNNNNGG	3 cut(s)	21, 27, 709
AgsI	TTSAA	3 cut(s)	315, 503, 605
AjnI	CCWGG	2 cut(s)	435, 655
AjuI	GAANNNNNNNTTGG	6 cut(s)	8, 40, 336, 368, 563, 595
AluBI	AGCT	6 cut(s)	182, 347, 425, 614, 688, 778
AluI	AGCT	6 cut(s)	182, 347, 425, 614, 688, 778
Alw21I	GWGCWC	1 cut(s)	780
Alw26I	GTCTC	1 cut(s)	80
AlwNI	CAGNNNCTG	1 cut(s)	347
Ama87I	CYCGRG	2 cut(s)	83, 403
AoxI	GGCC	4 cut(s)	12, 30, 90, 185
ApeKI	GCWGC	1 cut(s)	425
ApoI	RAATTY	1 cut(s)	650
AspS9I	GGNCC	2 cut(s)	30, 222
AsuC2I	CCSGG	5 cut(s)	22, 29, 41, 330, 704
AsuHPI	GGTGA	1 cut(s)	750
AvaI	CYCGRG	2 cut(s)	83, 403
AvaII	GGWCC	1 cut(s)	222
AxyI	CCTNAGG	1 cut(s)	150
BalI	TGGCCA	1 cut(s)	14
BanII	GRGCYC	1 cut(s)	780
Bbv12I	GWGCWC	1 cut(s)	780
BbvI	GCAGC	1 cut(s)	412
BccI	CCATC	2 cut(s)	312, 569
BceAI	ACGGC	1 cut(s)	105
BciT130I	CCWGG	2 cut(s)	437, 657
BciVI	GTATCC	1 cut(s)	47
BcnI	CCSGG	5 cut(s)	22, 29, 41, 330, 704
BcoDI	GTCTC	1 cut(s)	80
BfmI	CTRYAG	1 cut(s)	426
BfuI	GTATCC	1 cut(s)	47
BglII	AGATCT	1 cut(s)	496
BisI	GCNGC	1 cut(s)	426
BlsI	GCNGC	1 cut(s)	427
Bme1390I	CCNGG	7 cut(s)	22, 29, 41, 330, 437, 657, 704
Bme18I	GGWCC	1 cut(s)	222
BmeT110I	CYCGRG	2 cut(s)	83, 403
BmgT120I	GGNCC	2 cut(s)	30, 222
BmiI	GGNNCC	2 cut(s)	26, 327
BmrFI	CCNGG	7 cut(s)	22, 29, 41, 330, 437, 657, 704
BmrI	ACTGGG	1 cut(s)	271
BmsI	GCATC	2 cut(s)	124, 355
BmuI	ACTGGG	1 cut(s)	271
BpuMI	CCSGG	5 cut(s)	22, 29, 41, 330, 704
BsaHI	GRCGYC	1 cut(s)	358
BsaJI	CCNNGG	5 cut(s)	39, 49, 225, 479, 656
BsaXI	ACNNNNNCTCC	2 cut(s)	47, 77
Bsc4I	CCNNNNNNNGG	3 cut(s)	21, 27, 709
Bse118I	RCCGGY	2 cut(s)	187, 203
Bse1I	ACTGG	1 cut(s)	277
Bse21I	CCTNAGG	1 cut(s)	150
Bse3DI	GCAATG	3 cut(s)	391, 545, 573
BseBI	CCWGG	2 cut(s)	437, 657
BseDI	CCNNGG	5 cut(s)	39, 49, 225, 479, 656
BseGI	GGATG	2 cut(s)	666, 780
BseLI	CCNNNNNNNGG	3 cut(s)	21, 27, 709
BseMI	GCAATG	3 cut(s)	391, 545, 573
BseMII	CTCAG	1 cut(s)	480
BseNI	ACTGG	1 cut(s)	277
BseRI	GAGGAG	1 cut(s)	421
BseXI	GCAGC	1 cut(s)	412
BsgI	GTGCAG	1 cut(s)	194
BshFI	GGCC	4 cut(s)	14, 32, 92, 187
BsiHKAI	GWGCWC	1 cut(s)	780
BsiHKCI	CYCGRG	2 cut(s)	83, 403
BsiSI	CCGG	7 cut(s)	21, 28, 41, 188, 204, 329, 704
BslFI	GGGAC	2 cut(s)	258, 686
BslI	CCNNNNNNNGG	3 cut(s)	21, 27, 709
BsmAI	GTCTC	1 cut(s)	80
BsmBI	CGTCTC	1 cut(s)	80
BsmFI	GGGAC	2 cut(s)	258, 686
BsnI	GGCC	4 cut(s)	14, 32, 92, 187
BsoBI	CYCGRG	2 cut(s)	83, 403
Bsp1286I	GDGCHC	1 cut(s)	780
Bsp1407I	TGTACA	1 cut(s)	390
Bsp143I	GATC	3 cut(s)	3, 441, 496
BspACI	CCGC	2 cut(s)	71, 382
BspANI	GGCC	4 cut(s)	14, 32, 92, 187
BspCNI	CTCAG	1 cut(s)	481
BspLI	GGNNCC	2 cut(s)	26, 327
BspMAI	CTGCAG	1 cut(s)	430
BsrDI	GCAATG	3 cut(s)	391, 545, 573
BsrFI	RCCGGY	2 cut(s)	187, 203
BsrGI	TGTACA	1 cut(s)	390
BsrI	ACTGG	1 cut(s)	277
BssAI	RCCGGY	2 cut(s)	187, 203
BssECI	CCNNGG	5 cut(s)	39, 49, 225, 479, 656
BssMI	GATC	3 cut(s)	3, 441, 496
BssNAI	GTATAC	1 cut(s)	646
BssNI	GRCGYC	1 cut(s)	358
BssT1I	CCWWGG	2 cut(s)	225, 479
Bst1107I	GTATAC	1 cut(s)	646
Bst2UI	CCWGG	2 cut(s)	437, 657
Bst4CI	ACNGT	2 cut(s)	376, 680
Bst6I	CTCTTC	1 cut(s)	477
BstACI	GRCGYC	1 cut(s)	358
BstAUI	TGTACA	1 cut(s)	390
BstC8I	GCNNGC	1 cut(s)	189
BstDEI	CTNAG	2 cut(s)	150, 489
BstF5I	GGATG	2 cut(s)	666, 780
BstKTI	GATC	3 cut(s)	6, 444, 499
BstMAI	GTCTC	1 cut(s)	80
BstMBI	GATC	3 cut(s)	3, 441, 496
BstMWI	GCNNNNNNNGC	2 cut(s)	188, 256
BstNI	CCWGG	2 cut(s)	437, 657
BstNSI	RCATGY	1 cut(s)	259
BstSCI	CCNGG	7 cut(s)	20, 27, 39, 328, 435, 655, 702
BstSFI	CTRYAG	1 cut(s)	426
BstV1I	GCAGC	1 cut(s)	412
BstX2I	RGATCY	1 cut(s)	496
BstYI	RGATCY	1 cut(s)	496
BstZ17I	GTATAC	1 cut(s)	646
Bsu36I	CCTNAGG	1 cut(s)	150
BsuI	GTATCC	1 cut(s)	47
BsuRI	GGCC	4 cut(s)	14, 32, 92, 187
BtsCI	GGATG	2 cut(s)	666, 780
BtsIMutI	CAGTG	2 cut(s)	486, 685
Cac8I	GCNNGC	1 cut(s)	189
CaiI	CAGNNNCTG	1 cut(s)	347
Cfr10I	RCCGGY	2 cut(s)	187, 203
Cfr13I	GGNCC	2 cut(s)	30, 222
CseI	GACGC	1 cut(s)	366
Csp6I	GTAC	3 cut(s)	193, 391, 520
CspCI	CAANNNNNGTGG	2 cut(s)	82, 117
CviAII	CATG	2 cut(s)	256, 445
CviQI	GTAC	3 cut(s)	193, 391, 520
DdeI	CTNAG	2 cut(s)	150, 489
DpnI	GATC	3 cut(s)	5, 443, 498
DpnII	GATC	3 cut(s)	3, 441, 496
EaeI	YGGCCR	3 cut(s)	12, 90, 185
Eam1104I	CTCTTC	1 cut(s)	477
EarI	CTCTTC	1 cut(s)	477
Ecl136II	GAGCTC	1 cut(s)	778
Eco130I	CCWWGG	2 cut(s)	225, 479
Eco24I	GRGCYC	1 cut(s)	780
Eco47I	GGWCC	1 cut(s)	222
Eco53kI	GAGCTC	1 cut(s)	778
Eco57I	CTGAAG	1 cut(s)	318
Eco81I	CCTNAGG	1 cut(s)	150
Eco88I	CYCGRG	2 cut(s)	83, 403
EcoICRI	GAGCTC	1 cut(s)	778
EcoO109I	RGGNCCY	1 cut(s)	222
EcoRII	CCWGG	2 cut(s)	435, 655
EcoT14I	CCWWGG	2 cut(s)	225, 479
EcoT38I	GRGCYC	1 cut(s)	780
ErhI	CCWWGG	2 cut(s)	225, 479
Esp3I	CGTCTC	1 cut(s)	80
FaeI	CATG	2 cut(s)	259, 448
FaqI	GGGAC	2 cut(s)	258, 686
FatI	CATG	2 cut(s)	255, 444
FauI	CCCGC	1 cut(s)	78
FauNDI	CATATG	1 cut(s)	508
FblI	GTMKAC	2 cut(s)	464, 645
Fnu4HI	GCNGC	1 cut(s)	426
FokI	GGATG	2 cut(s)	673, 767
FriOI	GRGCYC	1 cut(s)	780
Fsp4HI	GCNGC	1 cut(s)	426
GluI	GCNGC	1 cut(s)	426
HaeIII	GGCC	4 cut(s)	14, 32, 92, 187
HapII	CCGG	7 cut(s)	21, 28, 41, 188, 204, 329, 704
HgaI	GACGC	1 cut(s)	366
Hin1I	GRCGYC	1 cut(s)	358
Hin1II	CATG	2 cut(s)	259, 448
HinfI	GANTC	3 cut(s)	60, 458, 593
HpaII	CCGG	7 cut(s)	21, 28, 41, 188, 204, 329, 704
HphI	GGTGA	1 cut(s)	750
Hpy166II	GTNNAC	6 cut(s)	391, 457, 465, 486, 646, 748
Hpy188I	TCNGA	2 cut(s)	67, 167
Hpy188III	TCNNGA	6 cut(s)	131, 296, 315, 403, 500, 749
Hpy8I	GTNNAC	6 cut(s)	391, 457, 465, 486, 646, 748
HpyAV	CCTTC	4 cut(s)	106, 293, 302, 725
HpyCH4III	ACNGT	2 cut(s)	376, 680
HpyCH4IV	ACGT	1 cut(s)	788
HpyCH4V	TGCA	3 cut(s)	211, 428, 550
HpyF10VI	GCNNNNNNNGC	2 cut(s)	188, 256
HpyF3I	CTNAG	2 cut(s)	150, 489
HpySE526I	ACGT	1 cut(s)	788
Hsp92I	GRCGYC	1 cut(s)	358
Hsp92II	CATG	2 cut(s)	259, 448
KroI	GCCGGC	1 cut(s)	187
KroNI	GCCGGC	1 cut(s)	189
Kzo9I	GATC	3 cut(s)	3, 441, 496
LmnI	GCTCC	1 cut(s)	179
Lsp1109I	GCAGC	1 cut(s)	412
LweI	GCATC	2 cut(s)	124, 355
MaeII	ACGT	1 cut(s)	788
MaeIII	GTNAC	1 cut(s)	235
MalI	GATC	3 cut(s)	5, 443, 498
MboI	GATC	3 cut(s)	3, 441, 496
MboII	GAAGA	2 cut(s)	464, 506
MflI	RGATCY	1 cut(s)	496
MhlI	GDGCHC	1 cut(s)	780
MlsI	TGGCCA	1 cut(s)	14
MluCI	AATT	1 cut(s)	650
MluNI	TGGCCA	1 cut(s)	14
MlyI	GAGTC	2 cut(s)	54, 452
MmeI	TCCRAC	1 cut(s)	90
MnlI	CCTC	8 cut(s)	44, 84, 128, 170, 399, 480, 484, 794
Mox20I	TGGCCA	1 cut(s)	14
MroNI	GCCGGC	1 cut(s)	187
MscI	TGGCCA	1 cut(s)	14
MseI	TTAA	2 cut(s)	285, 771
Msp20I	TGGCCA	1 cut(s)	14
MspI	CCGG	7 cut(s)	21, 28, 41, 188, 204, 329, 704
MspR9I	CCNGG	7 cut(s)	22, 29, 41, 330, 437, 657, 704
MvaI	CCWGG	2 cut(s)	437, 657
MwoI	GCNNNNNNNGC	2 cut(s)	188, 256
NaeI	GCCGGC	1 cut(s)	189
NciI	CCSGG	5 cut(s)	22, 29, 41, 330, 704
NdeI	CATATG	1 cut(s)	508
NdeII	GATC	3 cut(s)	3, 441, 496
NgoMIV	GCCGGC	1 cut(s)	187
NlaIII	CATG	2 cut(s)	259, 448
NlaIV	GGNNCC	2 cut(s)	26, 327
NspI	RCATGY	1 cut(s)	259
PaeR7I	CTCGAG	1 cut(s)	403
PcsI	WCGNNNNNNNCGW	1 cut(s)	63
PdiI	GCCGGC	1 cut(s)	189
PfeI	GAWTC	1 cut(s)	593
PfoI	TCCNGGA	1 cut(s)	702
PkrI	GCNGC	1 cut(s)	427
PleI	GAGTC	2 cut(s)	54, 452
PpsI	GAGTC	2 cut(s)	54, 452
PpuMI	RGGWCCY	1 cut(s)	222
PsiI	TTATAA	1 cut(s)	623
Psp124BI	GAGCTC	1 cut(s)	780
Psp5II	RGGWCCY	1 cut(s)	222
Psp6I	CCWGG	2 cut(s)	435, 655
PspGI	CCWGG	2 cut(s)	435, 655
PspN4I	GGNNCC	2 cut(s)	26, 327
PspPI	GGNCC	2 cut(s)	30, 222
PspPPI	RGGWCCY	1 cut(s)	222
PstI	CTGCAG	1 cut(s)	430
PstNI	CAGNNNCTG	1 cut(s)	347
PsuI	RGATCY	1 cut(s)	496
RsaI	GTAC	3 cut(s)	194, 392, 521
RsaNI	GTAC	3 cut(s)	193, 391, 520
SacI	GAGCTC	1 cut(s)	780
SaqAI	TTAA	2 cut(s)	285, 771
SatI	GCNGC	1 cut(s)	426
Sau3AI	GATC	3 cut(s)	3, 441, 496
Sau96I	GGNCC	2 cut(s)	30, 222
SchI	GAGTC	2 cut(s)	54, 452
ScrFI	CCNGG	7 cut(s)	22, 29, 41, 330, 437, 657, 704
SduI	GDGCHC	1 cut(s)	780
SfaNI	GCATC	2 cut(s)	124, 355
SfcI	CTRYAG	1 cut(s)	426
Sfr274I	CTCGAG	1 cut(s)	403
SinI	GGWCC	1 cut(s)	222
SlaI	CTCGAG	1 cut(s)	403
SmlI	CTYRAG	1 cut(s)	403
SmoI	CTYRAG	1 cut(s)	403
Sse9I	AATT	1 cut(s)	650
SsiI	CCGC	2 cut(s)	71, 382
SstI	GAGCTC	1 cut(s)	780
StyD4I	CCNGG	7 cut(s)	20, 27, 39, 328, 435, 655, 702
StyI	CCWWGG	2 cut(s)	225, 479
TaaI	ACNGT	2 cut(s)	376, 680
TaiI	ACGT	1 cut(s)	791
TaqI	TCGA	1 cut(s)	404
TasI	AATT	1 cut(s)	650
TatI	WGTACW	1 cut(s)	390
TfiI	GAWTC	1 cut(s)	593
Tru1I	TTAA	2 cut(s)	285, 771
Tru9I	TTAA	2 cut(s)	285, 771
TscAI	CASTG	2 cut(s)	493, 685
TseI	GCWGC	1 cut(s)	425
TspDTI	ATGAA	3 cut(s)	271, 584, 677
TspGWI	ACGGA	1 cut(s)	72
TspRI	CASTG	2 cut(s)	493, 685
VpaK11BI	GGWCC	1 cut(s)	222
XapI	RAATTY	1 cut(s)	650
XceI	RCATGY	1 cut(s)	259
XhoI	CTCGAG	1 cut(s)	403
XmiI	GTMKAC	2 cut(s)	464, 645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.