Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001460

Physical Location & Seq

Genomic Coordinates Forward (+)

5004131 .. 5006090

Gene Structure 1960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG066000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGACCAGATTCACCACAAGTACGTAACCGTACAAGGCTTGAAGCTCCATGTCGCCGACATCGGAACAGGTCCCAACGTGGTCGTGTTCCTGCATGGTTTCCCGGAGATATGGTATTCCTGGCGCCACCAGATGATCGCCGTAGCCGACGCCGGTTTCCGGGCCATCGCTCCTGACTACCGCGGATACGGACTATCCGACCCGCCTCCCCAACCCGAGAAGACCTCCTCCCATGACCTCATCAATGACCTTCTTGGAATTCTTGATGCTTTGGGTATTCCTAAGGTTTTCCTCATCGGAAAAGATTTTGGAGCTAGACCGGTATACTTGTTTGCCCTTCTGCACCCAGAAAAGGTGTTGGGAGTTGTAACAATGGGAGTTCCATACAGGCCACCATCAACTCGTTCCCCATATGATAAAGAGCTCCCTGAAGGTTTCTACATCAATAGATGGCGGGAACCTGGCAGGGCTGAAGCAGATTTTGGACGCCTTGATGCAAAAACAGTTGTTAGGAAGGTTTACATCCTTTTCTCAAGAAGCGAACTACCAATAGCTGCTGAGAACCAGGAGATCATGGACTTGGTGGACTCGTCTACACCTCTTCCCCCTTGGTTTACTGAGGAAGATCTTGAAGCATATGGAAAGCTGTATGAGAAATCAGGTTTCCGAACTGCCTTGCAAATGCCATATAGGGCATCCACAGACGACTTGGGCACAACCGAATCAATCGTTAGAGTTCCAGTGCTGTTTTTAATGGGAGAGAAGGATTATTTATTGAAATTTCCAGGGATAGAACATTACATAAATAGTGGAAAGTTAAACGAGTTTGTCCCCGATTTGGAGATTGTATCTCTGCCGGAAGGAACACATTTTGTTCAAGAACAATCACCTAAACAGGTTAATGAGCTCATCCTCACCTTCCTCAGAAAGCACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0001676 GO:0002532 GO:0002538 GO:0002539 GO:0003008 GO:0003013 GO:0003674 GO:0003824 GO:0004301 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006082 GO:0006629 GO:0006631 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0006954 GO:0007600 GO:0008015 GO:0008150 GO:0008152 GO:0008217 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0016801 GO:0016803 GO:0019233 GO:0019752 GO:0030258 GO:0032501 GO:0032787 GO:0033559 GO:0042577 GO:0042578 GO:0042579 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043651 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045777 GO:0046839 GO:0046872 GO:0050877 GO:0050896 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

312

Amino Acids

35.32

Weight (kDa)

5.6

Isoelectric Point (pI)

45.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	26 - 295	4.7e-29	alpha/beta hydrolase fold
Hydrolase_4	PF12146	27 - 128	6.3e-08	Serine aminopeptidase, S33
Abhydrolase_6	PF12697	28 - 302	1.2e-14	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001460)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g05700 FvH4_3g04781 FvH4_3g04781 FvH4_3g04781 FvH4_3g04784 FvH4_3g04784 FvH4_3g04790 FvH4_3g04790 FvH4_3g04790
malus_domestica	MD05G1316900.v1.1 MD05G1317400.v1.1 MD10G1297200.v1.1
prunus_persica	Prupe.4G043200_v2.0.a1 Prupe.4G043200_v2.0.a1
pyrus_communis	pycom05g29400 pycom10g25010 pycom10g25060
rosa_chinensis	RchiOBHm_Chr5g0007821 RchiOBHm_Chr5g0007841 RchiOBHm_Chr5g0007871 RchiOBHm_Chr5g0007881
rosa_laevigata	RLG00000031499 RLG00000031500 RLG00000031501
rosa_multiflora	Rmu_co8472583.1_g000001 Rmu_sc0005098.1_g000007 Rmu_sc0005098.1_g000012
rosa_roxburghii	Rroxscaffold_1G00068550 Rroxscaffold_1G00068560 Rroxscaffold_1G00068580
rosa_rugosa	Rorug04G0430600 Rorug04G0430600 Rorug04G0430600 Rorug04G0430600 Rorug04G0430700 Rorug04G0430800
rosa_samantha	Rh5AG059200 Rh5AG059300 Rh5AG059600 Rh5AG059700 Rh5BG056200 Rh5BG056300 Rh5BG056400 Rh5BG056500 Rh5CG066000 Rh5CG066100 Rh5CG066400 Rh5DG055300 Rh5DG055500
rosa_wichuraiana	Rw5G006050 Rw5G006060 Rw5G006070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	123
AccI	GTMKAC	2 cut(s)	324, 593
AccII	CGCG	1 cut(s)	183
AciI	CCGC	4 cut(s)	181, 183, 203, 454
AcsI	RAATTY	2 cut(s)	258, 779
AcuI	CTGAAG	2 cut(s)	450, 492
AcyI	GRCGYC	3 cut(s)	124, 150, 487
AfaI	GTAC	2 cut(s)	23, 33
AfiI	CCNNNNNNNGG	3 cut(s)	159, 352, 838
AgeI	ACCGGT	1 cut(s)	319
AgsI	TTSAA	4 cut(s)	43, 632, 778, 878
AjnI	CCWGG	4 cut(s)	119, 460, 564, 784
AjuI	GAANNNNNNNTTGG	2 cut(s)	465, 497
AluBI	AGCT	6 cut(s)	46, 314, 424, 554, 646, 907
AluI	AGCT	6 cut(s)	46, 314, 424, 554, 646, 907
Alw21I	GWGCWC	2 cut(s)	426, 909
Ama87I	CYCGRG	1 cut(s)	215
AoxI	GGCC	2 cut(s)	162, 389
ApeKI	GCWGC	1 cut(s)	554
ApoI	RAATTY	2 cut(s)	258, 779
AsiGI	ACCGGT	1 cut(s)	319
AspLEI	GCGC	1 cut(s)	126
AspS9I	GGNCC	3 cut(s)	4, 71, 162
AsuC2I	CCSGG	2 cut(s)	104, 161
AsuHPI	GGTGA	3 cut(s)	5, 879, 907
AvaI	CYCGRG	1 cut(s)	215
AvaII	GGWCC	2 cut(s)	4, 71
AxyI	CCTNAGG	1 cut(s)	282
BaeGI	GKGCMC	1 cut(s)	716
BanI	GGYRCC	1 cut(s)	123
BanII	GRGCYC	2 cut(s)	426, 909
BbsI	GAAGAC	1 cut(s)	227
Bbv12I	GWGCWC	2 cut(s)	426, 909
BbvI	GCAGC	1 cut(s)	541
BccI	CCATC	3 cut(s)	173, 403, 444
BceAI	ACGGC	1 cut(s)	125
BciT130I	CCWGG	4 cut(s)	121, 462, 566, 786
BciVI	GTATCC	1 cut(s)	179
BcnI	CCSGG	2 cut(s)	104, 161
BfaI	CTAG	1 cut(s)	315
BfoI	RGCGCY	1 cut(s)	127
BfuI	GTATCC	1 cut(s)	179
BglII	AGATCT	1 cut(s)	625
BisI	GCNGC	1 cut(s)	555
BlsI	GCNGC	1 cut(s)	556
Bme1390I	CCNGG	6 cut(s)	104, 121, 161, 462, 566, 786
Bme18I	GGWCC	2 cut(s)	4, 71
BmeT110I	CYCGRG	1 cut(s)	215
BmgT120I	GGNCC	3 cut(s)	4, 71, 162
BmiI	GGNNCC	3 cut(s)	73, 125, 459
BmrFI	CCNGG	6 cut(s)	104, 121, 161, 462, 566, 786
BmsI	GCATC	3 cut(s)	256, 484, 704
BpiI	GAAGAC	1 cut(s)	227
BplI	GAGNNNNNCTC	2 cut(s)	209, 241
BpuEI	CTTGAG	1 cut(s)	517
BpuMI	CCSGG	2 cut(s)	104, 161
BsaAI	YACGTR	1 cut(s)	25
BsaHI	GRCGYC	3 cut(s)	124, 150, 487
BsaJI	CCNNGG	3 cut(s)	181, 608, 785
BsaWI	WCCGGW	1 cut(s)	319
BsaXI	ACNNNNNCTCC	2 cut(s)	98, 128
Bsc4I	CCNNNNNNNGG	3 cut(s)	159, 352, 838
Bse118I	RCCGGY	2 cut(s)	152, 319
Bse1I	ACTGG	1 cut(s)	740
Bse21I	CCTNAGG	1 cut(s)	282
BseBI	CCWGG	4 cut(s)	121, 462, 566, 786
BseDI	CCNNGG	3 cut(s)	181, 608, 785
BseGI	GGATG	3 cut(s)	522, 695, 909
BseLI	CCNNNNNNNGG	3 cut(s)	159, 352, 838
BseMII	CTCAG	3 cut(s)	549, 609, 937
BseNI	ACTGG	1 cut(s)	740
BseRI	GAGGAG	1 cut(s)	217
BseSI	GKGCMC	1 cut(s)	716
BseXI	GCAGC	1 cut(s)	541
BsgI	GTGCAG	1 cut(s)	326
Bsh1236I	CGCG	1 cut(s)	183
BshFI	GGCC	2 cut(s)	164, 391
BshNI	GGYRCC	1 cut(s)	123
BshTI	ACCGGT	1 cut(s)	319
BsiHKAI	GWGCWC	2 cut(s)	426, 909
BsiHKCI	CYCGRG	1 cut(s)	215
BsiSI	CCGG	5 cut(s)	104, 153, 160, 320, 857
BslFI	GGGAC	2 cut(s)	57, 815
BslI	CCNNNNNNNGG	3 cut(s)	159, 352, 838
BsmFI	GGGAC	2 cut(s)	57, 815
BsnI	GGCC	2 cut(s)	164, 391
BsoBI	CYCGRG	1 cut(s)	215
Bsp1286I	GDGCHC	3 cut(s)	426, 716, 909
Bsp143I	GATC	3 cut(s)	135, 570, 625
BspACI	CCGC	4 cut(s)	181, 183, 203, 454
BspANI	GGCC	2 cut(s)	164, 391
BspCNI	CTCAG	3 cut(s)	550, 610, 936
BspFNI	CGCG	1 cut(s)	183
BspLI	GGNNCC	3 cut(s)	73, 125, 459
BspT107I	GGYRCC	1 cut(s)	123
BsrFI	RCCGGY	2 cut(s)	152, 319
BsrI	ACTGG	1 cut(s)	740
BssAI	RCCGGY	2 cut(s)	152, 319
BssECI	CCNNGG	3 cut(s)	181, 608, 785
BssMI	GATC	3 cut(s)	135, 570, 625
BssNAI	GTATAC	1 cut(s)	325
BssNI	GRCGYC	3 cut(s)	124, 150, 487
BssT1I	CCWWGG	1 cut(s)	608
Bst1107I	GTATAC	1 cut(s)	325
Bst2UI	CCWGG	4 cut(s)	121, 462, 566, 786
Bst4CI	ACNGT	2 cut(s)	31, 505
Bst6I	CTCTTC	1 cut(s)	606
BstACI	GRCGYC	3 cut(s)	124, 150, 487
BstBAI	YACGTR	1 cut(s)	25
BstDEI	CTNAG	4 cut(s)	282, 558, 618, 923
BstDSI	CCRYGG	1 cut(s)	181
BstF5I	GGATG	3 cut(s)	522, 695, 909
BstFNI	CGCG	1 cut(s)	183
BstH2I	RGCGCY	1 cut(s)	127
BstHHI	GCGC	1 cut(s)	126
BstKTI	GATC	3 cut(s)	138, 573, 628
BstMBI	GATC	3 cut(s)	135, 570, 625
BstNI	CCWGG	4 cut(s)	121, 462, 566, 786
BstSCI	CCNGG	6 cut(s)	102, 119, 159, 460, 564, 784
BstSLI	GKGCMC	1 cut(s)	716
BstSNI	TACGTA	1 cut(s)	25
BstUI	CGCG	1 cut(s)	183
BstV1I	GCAGC	1 cut(s)	541
BstV2I	GAAGAC	1 cut(s)	227
BstX2I	RGATCY	1 cut(s)	625
BstYI	RGATCY	1 cut(s)	625
BstZ17I	GTATAC	1 cut(s)	325
Bsu36I	CCTNAGG	1 cut(s)	282
BsuI	GTATCC	1 cut(s)	179
BsuRI	GGCC	2 cut(s)	164, 391
BtgI	CCRYGG	1 cut(s)	181
BtgZI	GCGATG	1 cut(s)	151
BtsCI	GGATG	3 cut(s)	522, 695, 909
BtsIMutI	CAGTG	1 cut(s)	747
CfoI	GCGC	1 cut(s)	126
Cfr10I	RCCGGY	2 cut(s)	152, 319
Cfr13I	GGNCC	3 cut(s)	4, 71, 162
Cfr42I	CCGCGG	1 cut(s)	184
CseI	GACGC	2 cut(s)	158, 495
Csp6I	GTAC	2 cut(s)	22, 32
CspAI	ACCGGT	1 cut(s)	319
CviAII	CATG	4 cut(s)	50, 95, 233, 574
CviQI	GTAC	2 cut(s)	22, 32
DdeI	CTNAG	4 cut(s)	282, 558, 618, 923
DinI	GGCGCC	1 cut(s)	125
DpnI	GATC	3 cut(s)	137, 572, 627
DpnII	GATC	3 cut(s)	135, 570, 625
Eam1104I	CTCTTC	1 cut(s)	606
EarI	CTCTTC	1 cut(s)	606
Ecl136II	GAGCTC	2 cut(s)	424, 907
Eco105I	TACGTA	1 cut(s)	25
Eco130I	CCWWGG	1 cut(s)	608
Eco24I	GRGCYC	2 cut(s)	426, 909
Eco47I	GGWCC	2 cut(s)	4, 71
Eco53kI	GAGCTC	2 cut(s)	424, 907
Eco57I	CTGAAG	2 cut(s)	450, 492
Eco81I	CCTNAGG	1 cut(s)	282
Eco88I	CYCGRG	1 cut(s)	215
EcoICRI	GAGCTC	2 cut(s)	424, 907
EcoO109I	RGGNCCY	1 cut(s)	71
EcoRI	GAATTC	1 cut(s)	258
EcoRII	CCWGG	4 cut(s)	119, 460, 564, 784
EcoT14I	CCWWGG	1 cut(s)	608
EcoT38I	GRGCYC	2 cut(s)	426, 909
EgeI	GGCGCC	1 cut(s)	125
EheI	GGCGCC	1 cut(s)	125
ErhI	CCWWGG	1 cut(s)	608
FaeI	CATG	4 cut(s)	53, 98, 236, 577
FaqI	GGGAC	2 cut(s)	57, 815
FatI	CATG	4 cut(s)	49, 94, 232, 573
FauI	CCCGC	2 cut(s)	210, 447
FauNDI	CATATG	2 cut(s)	412, 637
FblI	GTMKAC	2 cut(s)	324, 593
Fnu4HI	GCNGC	1 cut(s)	555
FokI	GGATG	3 cut(s)	509, 682, 896
FriOI	GRGCYC	2 cut(s)	426, 909
Fsp4HI	GCNGC	1 cut(s)	555
FspBI	CTAG	1 cut(s)	315
GlaI	GCGC	1 cut(s)	125
GluI	GCNGC	1 cut(s)	555
HaeII	RGCGCY	1 cut(s)	127
HaeIII	GGCC	2 cut(s)	164, 391
HapII	CCGG	5 cut(s)	104, 153, 160, 320, 857
HgaI	GACGC	2 cut(s)	158, 495
HhaI	GCGC	1 cut(s)	126
Hin1I	GRCGYC	3 cut(s)	124, 150, 487
Hin1II	CATG	4 cut(s)	53, 98, 236, 577
Hin6I	GCGC	1 cut(s)	124
HinP1I	GCGC	1 cut(s)	124
HinfI	GANTC	3 cut(s)	10, 587, 722
HpaII	CCGG	5 cut(s)	104, 153, 160, 320, 857
HphI	GGTGA	3 cut(s)	5, 879, 907
Hpy166II	GTNNAC	5 cut(s)	325, 520, 586, 594, 615
Hpy188I	TCNGA	5 cut(s)	65, 199, 299, 668, 926
Hpy188III	TCNNGA	5 cut(s)	173, 263, 534, 629, 878
Hpy8I	GTNNAC	5 cut(s)	325, 520, 586, 594, 615
Hpy99I	CGWCG	1 cut(s)	152
HpyAV	CCTTC	7 cut(s)	260, 347, 425, 508, 757, 854, 928
HpyCH4III	ACNGT	2 cut(s)	31, 505
HpyCH4IV	ACGT	2 cut(s)	24, 78
HpyCH4V	TGCA	4 cut(s)	94, 343, 497, 679
HpyF3I	CTNAG	4 cut(s)	282, 558, 618, 923
HpySE526I	ACGT	2 cut(s)	24, 78
Hsp92I	GRCGYC	3 cut(s)	124, 150, 487
Hsp92II	CATG	4 cut(s)	53, 98, 236, 577
HspAI	GCGC	1 cut(s)	124
KasI	GGCGCC	1 cut(s)	123
KspI	CCGCGG	1 cut(s)	184
Kzo9I	GATC	3 cut(s)	135, 570, 625
LmnI	GCTCC	4 cut(s)	51, 175, 311, 429
Lsp1109I	GCAGC	1 cut(s)	541
LweI	GCATC	3 cut(s)	256, 484, 704
MaeI	CTAG	1 cut(s)	315
MaeII	ACGT	2 cut(s)	24, 78
MaeIII	GTNAC	2 cut(s)	25, 367
MalI	GATC	3 cut(s)	137, 572, 627
MboI	GATC	3 cut(s)	135, 570, 625
MboII	GAAGA	3 cut(s)	232, 593, 635
MflI	RGATCY	1 cut(s)	625
MhlI	GDGCHC	3 cut(s)	426, 716, 909
MluCI	AATT	2 cut(s)	258, 779
Mly113I	GGCGCC	1 cut(s)	124
MlyI	GAGTC	1 cut(s)	581
MmeI	TCCRAC	1 cut(s)	222
MnlI	CCTC	9 cut(s)	216, 235, 238, 248, 302, 609, 613, 923, 932
MseI	TTAA	3 cut(s)	752, 818, 900
MspA1I	CMGCKG	1 cut(s)	183
MspI	CCGG	5 cut(s)	104, 153, 160, 320, 857
MspR9I	CCNGG	6 cut(s)	104, 121, 161, 462, 566, 786
MvaI	CCWGG	4 cut(s)	121, 462, 566, 786
MvnI	CGCG	1 cut(s)	183
NarI	GGCGCC	1 cut(s)	124
NciI	CCSGG	2 cut(s)	104, 161
NdeI	CATATG	2 cut(s)	412, 637
NdeII	GATC	3 cut(s)	135, 570, 625
NlaIII	CATG	4 cut(s)	53, 98, 236, 577
NlaIV	GGNNCC	3 cut(s)	73, 125, 459
PcsI	WCGNNNNNNNCGW	2 cut(s)	144, 195
PfeI	GAWTC	2 cut(s)	10, 722
PfoI	TCCNGGA	1 cut(s)	102
PinAI	ACCGGT	1 cut(s)	319
PkrI	GCNGC	1 cut(s)	556
PleI	GAGTC	1 cut(s)	581
PluTI	GGCGCC	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	581
Ppu21I	YACGTR	1 cut(s)	25
PpuMI	RGGWCCY	1 cut(s)	71
Psp124BI	GAGCTC	2 cut(s)	426, 909
Psp5II	RGGWCCY	1 cut(s)	71
Psp6I	CCWGG	4 cut(s)	119, 460, 564, 784
PspGI	CCWGG	4 cut(s)	119, 460, 564, 784
PspN4I	GGNNCC	3 cut(s)	73, 125, 459
PspPI	GGNCC	3 cut(s)	4, 71, 162
PspPPI	RGGWCCY	1 cut(s)	71
PsuI	RGATCY	1 cut(s)	625
RsaI	GTAC	2 cut(s)	23, 33
RsaNI	GTAC	2 cut(s)	22, 32
SacI	GAGCTC	2 cut(s)	426, 909
SacII	CCGCGG	1 cut(s)	184
SaqAI	TTAA	3 cut(s)	752, 818, 900
SatI	GCNGC	1 cut(s)	555
Sau3AI	GATC	3 cut(s)	135, 570, 625
Sau96I	GGNCC	3 cut(s)	4, 71, 162
SchI	GAGTC	1 cut(s)	581
ScrFI	CCNGG	6 cut(s)	104, 121, 161, 462, 566, 786
SduI	GDGCHC	3 cut(s)	426, 716, 909
SfaNI	GCATC	3 cut(s)	256, 484, 704
SfoI	GGCGCC	1 cut(s)	125
Sfr303I	CCGCGG	1 cut(s)	184
SgrBI	CCGCGG	1 cut(s)	184
SinI	GGWCC	2 cut(s)	4, 71
SmlI	CTYRAG	1 cut(s)	532
SmoI	CTYRAG	1 cut(s)	532
SnaBI	TACGTA	1 cut(s)	25
Sse9I	AATT	2 cut(s)	258, 779
SsiI	CCGC	4 cut(s)	181, 183, 203, 454
SspDI	GGCGCC	1 cut(s)	123
SspMI	CTAG	1 cut(s)	315
SstI	GAGCTC	2 cut(s)	426, 909
StyD4I	CCNGG	6 cut(s)	102, 119, 159, 460, 564, 784
StyI	CCWWGG	1 cut(s)	608
TaaI	ACNGT	2 cut(s)	31, 505
TaiI	ACGT	2 cut(s)	27, 81
TasI	AATT	2 cut(s)	258, 779
TfiI	GAWTC	2 cut(s)	10, 722
Tru1I	TTAA	3 cut(s)	752, 818, 900
Tru9I	TTAA	3 cut(s)	752, 818, 900
TscAI	CASTG	1 cut(s)	747
TseI	GCWGC	1 cut(s)	554
TspGWI	ACGGA	1 cut(s)	204
TspRI	CASTG	1 cut(s)	747
VpaK11BI	GGWCC	2 cut(s)	4, 71
XapI	RAATTY	2 cut(s)	258, 779
XcmI	CCANNNNNNNNNTGG	1 cut(s)	706
XmiI	GTMKAC	2 cut(s)	324, 593
XspI	CTAG	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.