Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0006381

Physical Location & Seq

Genomic Coordinates Forward (+)

3279622 .. 3280296

Gene Structure 675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g06201.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGTTGACAATGGCAGAACGATACGTCCGCATCGAATTCCTCCTATTGAGTACATTGCAACCGTGGCTTCTCATTTTGGTCCCGATGCGAGCATGTGGATGAATACTTTTGAAGAGCCAAATCCAATGGCTACATGGAATCAGTTGCTACAACATTTTTGGAACATCATGGGGTTGGTACAACTCTTACCAATTTTTCTAGGTGGATTAAAACCTGAAATTAGACATGATGTTCTTGTCATGGAGCCCCACACTTTGACAACAGCCCAACGCCTAGCTCGATTGTATGAGGCAAAGCTTGTTGACATTAACACTTCTCAGTCCGCCTCTTCCATAATTAGTTCATTGCACAGCACCCACGAACAAGAGAAATGGTCGAGGTCTCATGTTTGTAAAAAGCTGATTATGGCTATTTTGGCGTCTCCAGTTCATGGTGAAGAGGTCGTTGTAGATGACATTCCAGGTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVP_2 RVT_1 Retrotrans_gag gag-asp_proteas rve

Protein Analysis

157

Amino Acids

17.61

Weight (kDa)

5.95

Isoelectric Point (pI)

42.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006381)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06201 FvH4_1g08061 FvH4_1g08061 FvH4_5g27691 FvH4_6g16962 FvH4_7g30611
rosa_chinensis	RchiOBHm_Chr2g0094121 RchiOBHm_Chr6g0296601
rosa_laevigata	RLG00000008247 RLG00000016457
rosa_roxburghii	Rroxscaffold_2G00076380 Rroxscaffold_2G00132740 Rroxscaffold_2G00147460 Rroxscaffold_3G00257090 Rroxscaffold_7G00171340
rosa_rugosa	Rorug03G0253300 Rorug03G0304200
rosa_samantha	Rh1DG093900 Rh2AG088700 Rh2AG365300 Rh2BG088800 Rh2BG325600 Rh2CG091200 Rh2DG087800 Rh4AG227300 Rh4CG009100
rosa_wichuraiana	Rw4G001570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	431
AciI	CCGC	2 cut(s)	29, 324
AcsI	RAATTY	1 cut(s)	36
AcyI	GRCGYC	1 cut(s)	419
AfaI	GTAC	2 cut(s)	53, 180
AfiI	CCNNNNNNNGG	1 cut(s)	431
AgsI	TTSAA	1 cut(s)	113
AjnI	CCWGG	1 cut(s)	460
AloI	GAACNNNNNNTCC	2 cut(s)	10, 42
AluBI	AGCT	3 cut(s)	278, 298, 400
AluI	AGCT	3 cut(s)	278, 298, 400
Alw26I	GTCTC	2 cut(s)	387, 426
ApoI	RAATTY	1 cut(s)	36
AspS9I	GGNCC	1 cut(s)	80
AsuHPI	GGTGA	1 cut(s)	446
AvaII	GGWCC	1 cut(s)	80
BanII	GRGCYC	1 cut(s)	249
BciT130I	CCWGG	1 cut(s)	462
BcoDI	GTCTC	2 cut(s)	387, 426
BfaI	CTAG	2 cut(s)	200, 275
Bme1390I	CCNGG	1 cut(s)	462
Bme18I	GGWCC	1 cut(s)	80
BmgT120I	GGNCC	1 cut(s)	80
BmiI	GGNNCC	2 cut(s)	82, 246
BmrFI	CCNGG	1 cut(s)	462
BmsI	GCATC	2 cut(s)	40, 76
BpmI	CTGGAG	1 cut(s)	408
BsaHI	GRCGYC	1 cut(s)	419
BsaI	GGTCTC	1 cut(s)	387
BsaJI	CCNNGG	1 cut(s)	63
Bsc4I	CCNNNNNNNGG	1 cut(s)	431
Bse1I	ACTGG	1 cut(s)	425
Bse3DI	GCAATG	2 cut(s)	54, 344
BseBI	CCWGG	1 cut(s)	462
BseDI	CCNNGG	1 cut(s)	63
BseGI	GGATG	1 cut(s)	105
BseLI	CCNNNNNNNGG	1 cut(s)	431
BseMI	GCAATG	2 cut(s)	54, 344
BseMII	CTCAG	1 cut(s)	332
BseNI	ACTGG	1 cut(s)	425
BslFI	GGGAC	1 cut(s)	66
BslI	CCNNNNNNNGG	1 cut(s)	431
BsmAI	GTCTC	2 cut(s)	387, 426
BsmBI	CGTCTC	1 cut(s)	426
BsmFI	GGGAC	1 cut(s)	66
Bso31I	GGTCTC	1 cut(s)	387
Bsp1286I	GDGCHC	1 cut(s)	249
BspACI	CCGC	2 cut(s)	29, 324
BspCNI	CTCAG	1 cut(s)	331
BspLI	GGNNCC	2 cut(s)	82, 246
BspQI	GCTCTTC	1 cut(s)	108
BspTNI	GGTCTC	1 cut(s)	387
BsrDI	GCAATG	2 cut(s)	54, 344
BsrI	ACTGG	1 cut(s)	425
BssECI	CCNNGG	1 cut(s)	63
BssNI	GRCGYC	1 cut(s)	419
Bst2UI	CCWGG	1 cut(s)	462
Bst4CI	ACNGT	1 cut(s)	64
Bst6I	CTCTTC	3 cut(s)	108, 334, 432
BstACI	GRCGYC	1 cut(s)	419
BstC8I	GCNNGC	1 cut(s)	91
BstDEI	CTNAG	1 cut(s)	318
BstDSI	CCRYGG	1 cut(s)	63
BstF5I	GGATG	1 cut(s)	105
BstMAI	GTCTC	2 cut(s)	387, 426
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 416
BstNI	CCWGG	1 cut(s)	462
BstNSI	RCATGY	1 cut(s)	97
BstSCI	CCNGG	1 cut(s)	460
BtgI	CCRYGG	1 cut(s)	63
BtsCI	GGATG	1 cut(s)	105
Cac8I	GCNNGC	1 cut(s)	91
Cfr13I	GGNCC	1 cut(s)	80
CseI	GACGC	1 cut(s)	408
Csp6I	GTAC	2 cut(s)	52, 179
CviAII	CATG	7 cut(s)	94, 135, 169, 227, 241, 386, 431
CviJI	RGCY	9 cut(s)	68, 118, 131, 247, 266, 278, 298, 400, 410
CviKI_1	RGCY	9 cut(s)	68, 118, 131, 247, 266, 278, 298, 400, 410
CviQI	GTAC	2 cut(s)	52, 179
DdeI	CTNAG	1 cut(s)	318
Eam1104I	CTCTTC	3 cut(s)	108, 334, 432
EarI	CTCTTC	3 cut(s)	108, 334, 432
EciI	GGCGGA	1 cut(s)	313
Eco24I	GRGCYC	1 cut(s)	249
Eco31I	GGTCTC	1 cut(s)	387
Eco47I	GGWCC	1 cut(s)	80
EcoRI	GAATTC	1 cut(s)	36
EcoRII	CCWGG	1 cut(s)	460
EcoT38I	GRGCYC	1 cut(s)	249
Esp3I	CGTCTC	1 cut(s)	426
FaeI	CATG	7 cut(s)	97, 138, 172, 230, 244, 389, 434
FaqI	GGGAC	1 cut(s)	66
FatI	CATG	7 cut(s)	93, 134, 168, 226, 240, 385, 430
FokI	GGATG	1 cut(s)	112
FriOI	GRGCYC	1 cut(s)	249
FspBI	CTAG	2 cut(s)	200, 275
GsuI	CTGGAG	1 cut(s)	408
HgaI	GACGC	1 cut(s)	408
Hin1I	GRCGYC	1 cut(s)	419
Hin1II	CATG	7 cut(s)	97, 138, 172, 230, 244, 389, 434
HincII	GTYRAC	2 cut(s)	7, 304
HindII	GTYRAC	2 cut(s)	7, 304
HindIII	AAGCTT	1 cut(s)	296
HinfI	GANTC	1 cut(s)	139
HphI	GGTGA	1 cut(s)	446
Hpy166II	GTNNAC	2 cut(s)	7, 304
Hpy188III	TCNNGA	1 cut(s)	83
Hpy8I	GTNNAC	2 cut(s)	7, 304
HpyCH4III	ACNGT	1 cut(s)	64
HpyCH4IV	ACGT	1 cut(s)	25
HpyCH4V	TGCA	2 cut(s)	59, 349
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 416
HpyF3I	CTNAG	1 cut(s)	318
HpySE526I	ACGT	1 cut(s)	25
Hsp92I	GRCGYC	1 cut(s)	419
Hsp92II	CATG	7 cut(s)	97, 138, 172, 230, 244, 389, 434
LguI	GCTCTTC	1 cut(s)	108
LmnI	GCTCC	1 cut(s)	244
LpnPI	CCDG	3 cut(s)	228, 438, 447
LweI	GCATC	2 cut(s)	40, 76
MaeI	CTAG	2 cut(s)	200, 275
MaeII	ACGT	1 cut(s)	25
MaeIII	GTNAC	1 cut(s)	464
MboII	GAAGA	3 cut(s)	125, 321, 449
MhlI	GDGCHC	1 cut(s)	249
MluCI	AATT	4 cut(s)	36, 192, 219, 336
MnlI	CCTC	5 cut(s)	51, 283, 337, 372, 433
MseI	TTAA	2 cut(s)	209, 309
MslI	CAYNNNNRTG	1 cut(s)	98
MspR9I	CCNGG	1 cut(s)	462
MvaI	CCWGG	1 cut(s)	462
MwoI	GCNNNNNNNGC	2 cut(s)	65, 416
NlaIII	CATG	7 cut(s)	97, 138, 172, 230, 244, 389, 434
NlaIV	GGNNCC	2 cut(s)	82, 246
NmuCI	GTSAC	1 cut(s)	464
NspI	RCATGY	1 cut(s)	97
PciSI	GCTCTTC	1 cut(s)	108
PcsI	WCGNNNNNNNCGW	2 cut(s)	31, 277
PfeI	GAWTC	1 cut(s)	139
PflMI	CCANNNNNTGG	1 cut(s)	431
Psp6I	CCWGG	1 cut(s)	460
PspGI	CCWGG	1 cut(s)	460
PspN4I	GGNNCC	2 cut(s)	82, 246
PspPI	GGNCC	1 cut(s)	80
RsaI	GTAC	2 cut(s)	53, 180
RsaNI	GTAC	2 cut(s)	52, 179
RseI	CAYNNNNRTG	1 cut(s)	98
SapI	GCTCTTC	1 cut(s)	108
SaqAI	TTAA	2 cut(s)	209, 309
Sau96I	GGNCC	1 cut(s)	80
ScrFI	CCNGG	1 cut(s)	462
SduI	GDGCHC	1 cut(s)	249
SetI	ASST	9 cut(s)	28, 205, 217, 280, 300, 383, 402, 444, 466
SfaNI	GCATC	2 cut(s)	40, 76
SinI	GGWCC	1 cut(s)	80
SmiMI	CAYNNNNRTG	1 cut(s)	98
Sse9I	AATT	4 cut(s)	36, 192, 219, 336
SsiI	CCGC	2 cut(s)	29, 324
SspMI	CTAG	2 cut(s)	200, 275
StyD4I	CCNGG	1 cut(s)	460
TaaI	ACNGT	1 cut(s)	64
TaiI	ACGT	1 cut(s)	28
TaqI	TCGA	3 cut(s)	34, 280, 377
TasI	AATT	4 cut(s)	36, 192, 219, 336
TatI	WGTACW	1 cut(s)	51
TfiI	GAWTC	1 cut(s)	139
Tru1I	TTAA	2 cut(s)	209, 309
Tru9I	TTAA	2 cut(s)	209, 309
TseFI	GTSAC	1 cut(s)	464
Tsp45I	GTSAC	1 cut(s)	464
TspDTI	ATGAA	3 cut(s)	116, 333, 419
Van91I	CCANNNNNTGG	1 cut(s)	431
VpaK11BI	GGWCC	1 cut(s)	80
XapI	RAATTY	1 cut(s)	36
XceI	RCATGY	1 cut(s)	97
XcmI	CCANNNNNNNNNTGG	1 cut(s)	132
XspI	CTAG	2 cut(s)	200, 275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.