Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006381

Physical Location & Seq

Genomic Coordinates Reverse (-)

69746156 .. 69752291

Gene Structure 6136 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00132740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1434 bp

ATGAGAGGCCTGCAAATCTCCTCGACTTCACACAACCAAACCCCACCACCACCGCCACCTCCCCCGCCACCCCTGCGCCGGGACCCCTCCACTTCAACCACTATACCACCTCAAGATGATGATCCTTACACGGTGTTTCAAGACACTGTCGACCTCCTCCAATCACAGCAAGAGGATATCCACACCTCCATTCAGGCATTATCTCAGAGCCAGACCACCATGGCACATCAATTTGCTGCTTTCCAGCAGCTACTCATGAACCGTCTCCAACCTCCACAACCACCTGCCTCTACGACTACAGCACCATATGATTTTTCATGGCAATTGGGTTCCTCCGCAGCCCAATCCGTCGCCCAAATTCAACCTTCAACACCAGCTACACACCCACAAATCTCCTTTGGATCCATTCCACCACCACCCAATTCCTGGGCGGCTCTAACCATCGCCCAAACACCGCCACCACTCTCTGGCCCCGGTCCCAGCAACTCCCAGCCTTCACCTGCAACTCCCAGACCTCCTCCATACTCCAACCACCTTTCTACCCCACCCCAATACTCCACCTCTTTCTCAGCCCCGCCCCACTACGTCACTGCCCCTGTCCTAGCCCAACAACTTCCACCCTCACTGAGCTTTGCCACATCATTCCCTGTATACACCCCAACCTCTAGACCCCTTCAGCAATACAACACCTACACCCCACCCGACCCACATTTTTTCCGGCCACCCAAGGTGGACCTTCCGCGCTTCACTGGCGAGGACGTAACCGGTTGGCTAGCCATGGCTGAGAGGTACATACGCTCCCAGCACATCCCTCCTCACGAACGGGTATCCACAATTGCATCACACTTTGGACCGGATGCATCCATTTGGATGACTGCATTTGAGCAACGCAACCCGACAGCGAATTGGGATTGTTTTGTGGCTGCGTTCTTAGAGCATTTTGGGTCCGGCAATGTCACCGACTTCAAGGCTGCGTTGTCACACATTCAGCAATCATCCTCTGTCGATGAATTCATTACGGTCTTCACCAAACTCTCTTGCCGTGTTCCGGATTGGTCGGACGAGCAACTACTTCCGATCTTTCTGGGGAGCCTGAAATCCGAACTCCGGCACGACGTTATGGCCCTCGAGCCTAATACTCTGTCCCAAGCCCAGCGTCTAGCCCGACGCTATGAAGCACGCCTCCTTGATTTCCGCGCCATGCGCTCCCATCGCACCAGTTCTTGGTCGTACTCCCCTAAGCCACCAAGTGGTCCCCATTCCTCTGCCAACCCAAGCTTAATCAATACACACATGCAGCCGCCCAACCCTACTTCCCAACCTACCACCAACAATCAGTCATCTCAAAGACCCCGTCAAGAGGCAATTTACAGGCGCTTGTCCACACCAGAACAGAGAGAGACGAGCCAAAGGGCTCTGTTTCCATTGCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVP_2 RVT_1 Retrotrans_gag gag-asp_proteas rve

Protein Analysis

477

Amino Acids

52.93

Weight (kDa)

7.31

Isoelectric Point (pI)

61.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ty3_capsid	PF19259	272 - 393	2.8e-12	Ty3 transposon capsid-like protein
Retrotrans_gag	PF03732	279 - 366	3.9e-12	Retrotransposon gag protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006381)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06201 FvH4_1g08061 FvH4_1g08061 FvH4_5g27691 FvH4_6g16962 FvH4_7g30611
rosa_chinensis	RchiOBHm_Chr2g0094121 RchiOBHm_Chr6g0296601
rosa_laevigata	RLG00000008247 RLG00000016457
rosa_roxburghii	Rroxscaffold_2G00076380 Rroxscaffold_2G00132740 Rroxscaffold_2G00147460 Rroxscaffold_3G00257090 Rroxscaffold_7G00171340
rosa_rugosa	Rorug03G0253300 Rorug03G0304200
rosa_samantha	Rh1DG093900 Rh2AG088700 Rh2AG365300 Rh2BG088800 Rh2BG325600 Rh2CG091200 Rh2DG087800 Rh4AG227300 Rh4CG009100
rosa_wichuraiana	Rw4G001570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	292, 508
Acc36I	ACCTGC	2 cut(s)	292, 508
AccB7I	CCANNNNNTGG	4 cut(s)	426, 467, 1224, 1250
AccI	GTMKAC	2 cut(s)	150, 651
AccII	CGCG	2 cut(s)	742, 1197
AccIII	TCCGGA	1 cut(s)	1048
AciI	CCGC	9 cut(s)	53, 65, 336, 431, 455, 575, 740, 1195, 1301
AclWI	GGATC	3 cut(s)	116, 396, 409
AcoI	YGGCCR	1 cut(s)	719
AcsI	RAATTY	2 cut(s)	357, 1010
AcuI	CTGAAG	1 cut(s)	659
AdeI	CACNNNGTG	1 cut(s)	1250
AfaI	GTAC	2 cut(s)	791, 1232
AfiI	CCNNNNNNNGG	9 cut(s)	78, 79, 426, 467, 1048, 1107, 1224, 1250, 1360
AgeI	ACCGGT	1 cut(s)	764
AgsI	TTSAA	5 cut(s)	96, 140, 362, 369, 967
AjnI	CCWGG	1 cut(s)	425
AluBI	AGCT	4 cut(s)	250, 377, 630, 1278
AluI	AGCT	4 cut(s)	250, 377, 630, 1278
Alw26I	GTCTC	2 cut(s)	269, 1394
AlwI	GGATC	3 cut(s)	116, 396, 409
Ama87I	CYCGRG	1 cut(s)	1127
Aor13HI	TCCGGA	1 cut(s)	1048
AoxI	GGCC	4 cut(s)	7, 469, 719, 1122
ApeKI	GCWGC	6 cut(s)	236, 247, 338, 923, 971, 1297
ApoI	RAATTY	2 cut(s)	357, 1010
ArsI	GACNNNNNNTTYG	2 cut(s)	1339, 1371
AsiGI	ACCGGT	1 cut(s)	764
AspLEI	GCGC	5 cut(s)	78, 744, 1199, 1206, 1377
AspS9I	GGNCC	8 cut(s)	82, 470, 476, 733, 851, 945, 1123, 1253
AsuC2I	CCSGG	2 cut(s)	80, 474
AsuHPI	GGTGA	3 cut(s)	489, 949, 1018
AsuNHI	GCTAGC	1 cut(s)	772
AvaI	CYCGRG	1 cut(s)	1127
AvaII	GGWCC	6 cut(s)	82, 476, 733, 851, 945, 1253
BamHI	GGATCC	1 cut(s)	401
BanII	GRGCYC	1 cut(s)	1417
BbsI	GAAGAC	1 cut(s)	1015
BbvI	GCAGC	6 cut(s)	223, 259, 350, 910, 958, 1309
BccI	CCATC	2 cut(s)	449, 1218
BceAI	ACGGC	1 cut(s)	1026
BciT130I	CCWGG	1 cut(s)	427
BciVI	GTATCC	1 cut(s)	838
BcnI	CCSGG	2 cut(s)	80, 474
BcoDI	GTCTC	2 cut(s)	269, 1394
BfaI	CTAG	4 cut(s)	602, 666, 773, 1160
BfmI	CTRYAG	1 cut(s)	297
BfoI	RGCGCY	1 cut(s)	1378
BfuAI	ACCTGC	2 cut(s)	292, 508
BfuI	GTATCC	1 cut(s)	838
BisI	GCNGC	8 cut(s)	237, 248, 339, 432, 924, 972, 1298, 1301
BlsI	GCNGC	8 cut(s)	238, 249, 340, 433, 925, 973, 1299, 1302
Bme1390I	CCNGG	3 cut(s)	80, 427, 474
Bme18I	GGWCC	6 cut(s)	82, 476, 733, 851, 945, 1253
BmeT110I	CYCGRG	1 cut(s)	1127
BmgT120I	GGNCC	8 cut(s)	82, 470, 476, 733, 851, 945, 1123, 1253
BmiI	GGNNCC	9 cut(s)	83, 84, 331, 403, 472, 478, 946, 1091, 1255
BmrFI	CCNGG	3 cut(s)	80, 427, 474
BmsI	GCATC	3 cut(s)	847, 848, 869
BmtI	GCTAGC	1 cut(s)	776
BpiI	GAAGAC	1 cut(s)	1015
Bpu10I	CCTNAGC	1 cut(s)	1239
BpuEI	CTTGAG	1 cut(s)	96
BpuMI	CCSGG	2 cut(s)	80, 474
BsaBI	GATNNNNATC	1 cut(s)	120
BsaJI	CCNNGG	5 cut(s)	219, 426, 472, 726, 777
BsaWI	WCCGGW	3 cut(s)	764, 853, 1048
BsaXI	ACNNNNNCTCC	2 cut(s)	782, 812
Bsc4I	CCNNNNNNNGG	9 cut(s)	78, 79, 426, 467, 1048, 1107, 1224, 1250, 1360
Bse118I	RCCGGY	1 cut(s)	764
Bse1I	ACTGG	2 cut(s)	754, 1218
Bse3DI	GCAATG	2 cut(s)	958, 1424
Bse8I	GATNNNNATC	1 cut(s)	120
BseAI	TCCGGA	1 cut(s)	1048
BseBI	CCWGG	1 cut(s)	427
BseDI	CCNNGG	5 cut(s)	219, 426, 472, 726, 777
BseGI	GGATG	5 cut(s)	807, 860, 862, 876, 995
BseJI	GATNNNNATC	1 cut(s)	120
BseLI	CCNNNNNNNGG	9 cut(s)	78, 79, 426, 467, 1048, 1107, 1224, 1250, 1360
BseMI	GCAATG	2 cut(s)	958, 1424
BseMII	CTCAG	4 cut(s)	218, 582, 617, 774
BseNI	ACTGG	2 cut(s)	754, 1218
BseRI	GAGGAG	4 cut(s)	10, 146, 507, 804
BseXI	GCAGC	6 cut(s)	223, 259, 350, 910, 958, 1309
BseYI	CCCAGC	4 cut(s)	479, 489, 801, 1152
Bsh1236I	CGCG	2 cut(s)	742, 1197
BshFI	GGCC	4 cut(s)	9, 471, 721, 1124
BshTI	ACCGGT	1 cut(s)	764
BsiHKCI	CYCGRG	1 cut(s)	1127
BsiSI	CCGG	8 cut(s)	79, 474, 718, 765, 854, 948, 1049, 1108
BslFI	GGGAC	4 cut(s)	95, 462, 1129, 1239
BslI	CCNNNNNNNGG	9 cut(s)	78, 79, 426, 467, 1048, 1107, 1224, 1250, 1360
BsmAI	GTCTC	2 cut(s)	269, 1394
BsmBI	CGTCTC	2 cut(s)	269, 1394
BsmFI	GGGAC	4 cut(s)	95, 462, 1129, 1239
BsnI	GGCC	4 cut(s)	9, 471, 721, 1124
BsoBI	CYCGRG	1 cut(s)	1127
Bsp1286I	GDGCHC	1 cut(s)	1417
Bsp13I	TCCGGA	1 cut(s)	1048
Bsp143I	GATC	3 cut(s)	121, 401, 1077
Bsp19I	CCATGG	2 cut(s)	219, 777
BspACI	CCGC	9 cut(s)	53, 65, 336, 431, 455, 575, 740, 1195, 1301
BspANI	GGCC	4 cut(s)	9, 471, 721, 1124
BspCNI	CTCAG	4 cut(s)	217, 581, 618, 775
BspEI	TCCGGA	1 cut(s)	1048
BspFNI	CGCG	2 cut(s)	742, 1197
BspHI	TCATGA	1 cut(s)	255
BspLI	GGNNCC	9 cut(s)	83, 84, 331, 403, 472, 478, 946, 1091, 1255
BspMI	ACCTGC	2 cut(s)	292, 508
BspOI	GCTAGC	1 cut(s)	776
BspPI	GGATC	3 cut(s)	116, 396, 409
BsrDI	GCAATG	2 cut(s)	958, 1424
BsrFI	RCCGGY	1 cut(s)	764
BsrI	ACTGG	2 cut(s)	754, 1218
BssAI	RCCGGY	1 cut(s)	764
BssECI	CCNNGG	5 cut(s)	219, 426, 472, 726, 777
BssMI	GATC	3 cut(s)	121, 401, 1077
BssNAI	GTATAC	1 cut(s)	652
BssT1I	CCWWGG	3 cut(s)	219, 726, 777
Bst1107I	GTATAC	1 cut(s)	652
Bst2UI	CCWGG	1 cut(s)	427
Bst4CI	ACNGT	4 cut(s)	133, 148, 263, 1021
BstC8I	GCNNGC	3 cut(s)	11, 774, 1180
BstDEI	CTNAG	6 cut(s)	204, 568, 626, 783, 931, 1239
BstDSI	CCRYGG	2 cut(s)	219, 777
BstF5I	GGATG	5 cut(s)	807, 860, 862, 876, 995
BstFNI	CGCG	2 cut(s)	742, 1197
BstH2I	RGCGCY	1 cut(s)	1378
BstHHI	GCGC	5 cut(s)	78, 744, 1199, 1206, 1377
BstKTI	GATC	3 cut(s)	124, 404, 1080
BstMAI	GTCTC	2 cut(s)	269, 1394
BstMBI	GATC	3 cut(s)	121, 401, 1077
BstMWI	GCNNNNNNNGC	4 cut(s)	73, 750, 1203, 1212
BstNI	CCWGG	1 cut(s)	427
BstNSI	RCATGY	1 cut(s)	1297
BstSCI	CCNGG	3 cut(s)	78, 425, 472
BstSFI	CTRYAG	1 cut(s)	297
BstUI	CGCG	2 cut(s)	742, 1197
BstV1I	GCAGC	6 cut(s)	223, 259, 350, 910, 958, 1309
BstV2I	GAAGAC	1 cut(s)	1015
BstX2I	RGATCY	1 cut(s)	401
BstYI	RGATCY	1 cut(s)	401
BstZ17I	GTATAC	1 cut(s)	652
BsuI	GTATCC	1 cut(s)	838
BsuRI	GGCC	4 cut(s)	9, 471, 721, 1124
BtgI	CCRYGG	2 cut(s)	219, 777
BtgZI	GCGATG	2 cut(s)	427, 1196
BtsCI	GGATG	5 cut(s)	807, 860, 862, 876, 995
BtsI	GCAGTG	1 cut(s)	588
BtsIMutI	CAGTG	4 cut(s)	144, 588, 623, 747
BveI	ACCTGC	2 cut(s)	292, 508
Cac8I	GCNNGC	3 cut(s)	11, 774, 1180
CciI	TCATGA	1 cut(s)	255
CfoI	GCGC	5 cut(s)	78, 744, 1199, 1206, 1377
Cfr10I	RCCGGY	1 cut(s)	764
Cfr13I	GGNCC	8 cut(s)	82, 470, 476, 733, 851, 945, 1123, 1253
CseI	GACGC	2 cut(s)	1145, 1176
Csp6I	GTAC	2 cut(s)	790, 1231
CspAI	ACCGGT	1 cut(s)	764
CviAII	CATG	6 cut(s)	220, 256, 318, 778, 1201, 1294
CviQI	GTAC	2 cut(s)	790, 1231
DdeI	CTNAG	6 cut(s)	204, 568, 626, 783, 931, 1239
DpnI	GATC	3 cut(s)	123, 403, 1079
DpnII	GATC	3 cut(s)	121, 401, 1077
DraIII	CACNNNGTG	1 cut(s)	1250
EaeI	YGGCCR	1 cut(s)	719
Eco130I	CCWWGG	3 cut(s)	219, 726, 777
Eco147I	AGGCCT	1 cut(s)	9
Eco24I	GRGCYC	1 cut(s)	1417
Eco32I	GATATC	1 cut(s)	178
Eco47I	GGWCC	6 cut(s)	82, 476, 733, 851, 945, 1253
Eco57I	CTGAAG	1 cut(s)	659
Eco88I	CYCGRG	1 cut(s)	1127
EcoO109I	RGGNCCY	1 cut(s)	82
EcoRI	GAATTC	1 cut(s)	1010
EcoRII	CCWGG	1 cut(s)	425
EcoRV	GATATC	1 cut(s)	178
EcoT14I	CCWWGG	3 cut(s)	219, 726, 777
EcoT22I	ATGCAT	1 cut(s)	862
EcoT38I	GRGCYC	1 cut(s)	1417
ErhI	CCWWGG	3 cut(s)	219, 726, 777
Esp3I	CGTCTC	2 cut(s)	269, 1394
FaeI	CATG	6 cut(s)	223, 259, 321, 781, 1204, 1297
FaqI	GGGAC	4 cut(s)	95, 462, 1129, 1239
FatI	CATG	6 cut(s)	219, 255, 317, 777, 1200, 1293
FauI	CCCGC	2 cut(s)	72, 582
FauNDI	CATATG	1 cut(s)	307
FblI	GTMKAC	2 cut(s)	150, 651
Fnu4HI	GCNGC	8 cut(s)	237, 248, 339, 432, 924, 972, 1298, 1301
FokI	GGATG	5 cut(s)	794, 847, 869, 883, 982
FriOI	GRGCYC	1 cut(s)	1417
Fsp4HI	GCNGC	8 cut(s)	237, 248, 339, 432, 924, 972, 1298, 1301
FspBI	CTAG	4 cut(s)	602, 666, 773, 1160
GlaI	GCGC	5 cut(s)	77, 743, 1198, 1205, 1376
GluI	GCNGC	8 cut(s)	237, 248, 339, 432, 924, 972, 1298, 1301
GsaI	CCCAGC	4 cut(s)	483, 493, 805, 1156
HaeII	RGCGCY	1 cut(s)	1378
HaeIII	GGCC	4 cut(s)	9, 471, 721, 1124
HapII	CCGG	8 cut(s)	79, 474, 718, 765, 854, 948, 1049, 1108
HgaI	GACGC	2 cut(s)	1145, 1176
HhaI	GCGC	5 cut(s)	78, 744, 1199, 1206, 1377
Hin1II	CATG	6 cut(s)	223, 259, 321, 781, 1204, 1297
Hin6I	GCGC	5 cut(s)	76, 742, 1197, 1204, 1375
HinP1I	GCGC	5 cut(s)	76, 742, 1197, 1204, 1375
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HindIII	AAGCTT	1 cut(s)	1276
HpaII	CCGG	8 cut(s)	79, 474, 718, 765, 854, 948, 1049, 1108
HphI	GGTGA	3 cut(s)	489, 949, 1018
Hpy166II	GTNNAC	4 cut(s)	151, 652, 733, 1383
Hpy188I	TCNGA	4 cut(s)	207, 1060, 1077, 1102
Hpy188III	TCNNGA	7 cut(s)	113, 140, 256, 666, 818, 1049, 1358
Hpy8I	GTNNAC	4 cut(s)	151, 652, 733, 1383
Hpy99I	CGWCG	3 cut(s)	353, 1118, 1170
HpyAV	CCTTC	4 cut(s)	375, 504, 683, 746
HpyCH4III	ACNGT	4 cut(s)	133, 148, 263, 1021
HpyCH4IV	ACGT	3 cut(s)	585, 759, 1116
HpyCH4V	TGCA	6 cut(s)	13, 503, 839, 860, 878, 1297
HpyF10VI	GCNNNNNNNGC	4 cut(s)	73, 750, 1203, 1212
HpyF3I	CTNAG	6 cut(s)	204, 568, 626, 783, 931, 1239
HpySE526I	ACGT	3 cut(s)	585, 759, 1116
Hsp92II	CATG	6 cut(s)	223, 259, 321, 781, 1204, 1297
HspAI	GCGC	5 cut(s)	76, 742, 1197, 1204, 1375
KflI	GGGWCCC	1 cut(s)	82
Kpn2I	TCCGGA	1 cut(s)	1048
Kzo9I	GATC	3 cut(s)	121, 401, 1077
LmnI	GCTCC	3 cut(s)	803, 1089, 1211
Lsp1109I	GCAGC	6 cut(s)	223, 259, 350, 910, 958, 1309
LweI	GCATC	3 cut(s)	847, 848, 869
MaeI	CTAG	4 cut(s)	602, 666, 773, 1160
MaeII	ACGT	3 cut(s)	585, 759, 1116
MaeIII	GTNAC	4 cut(s)	586, 760, 955, 978
MalI	GATC	3 cut(s)	123, 403, 1079
MboI	GATC	3 cut(s)	121, 401, 1077
MboII	GAAGA	1 cut(s)	1015
MfeI	CAATTG	2 cut(s)	323, 834
MflI	RGATCY	1 cut(s)	401
MhlI	GDGCHC	1 cut(s)	1417
MluCI	AATT	8 cut(s)	230, 323, 357, 421, 834, 904, 1010, 1365
MmeI	TCCRAC	3 cut(s)	292, 552, 1038
Mph1103I	ATGCAT	1 cut(s)	862
MroI	TCCGGA	1 cut(s)	1048
MseI	TTAA	1 cut(s)	1280
MslI	CAYNNNNRTG	2 cut(s)	869, 1429
MspI	CCGG	8 cut(s)	79, 474, 718, 765, 854, 948, 1049, 1108
MspR9I	CCNGG	3 cut(s)	80, 427, 474
MunI	CAATTG	2 cut(s)	323, 834
MvaI	CCWGG	1 cut(s)	427
MvnI	CGCG	2 cut(s)	742, 1197
MwoI	GCNNNNNNNGC	4 cut(s)	73, 750, 1203, 1212
NciI	CCSGG	2 cut(s)	80, 474
NcoI	CCATGG	2 cut(s)	219, 777
NdeI	CATATG	1 cut(s)	307
NdeII	GATC	3 cut(s)	121, 401, 1077
NheI	GCTAGC	1 cut(s)	772
NlaIII	CATG	6 cut(s)	223, 259, 321, 781, 1204, 1297
NlaIV	GGNNCC	9 cut(s)	83, 84, 331, 403, 472, 478, 946, 1091, 1255
NmuCI	GTSAC	3 cut(s)	586, 955, 978
NsiI	ATGCAT	1 cut(s)	862
NspI	RCATGY	1 cut(s)	1297
PaeR7I	CTCGAG	1 cut(s)	1127
PagI	TCATGA	1 cut(s)	255
PaqCI	CACCTGC	2 cut(s)	292, 508
PceI	AGGCCT	1 cut(s)	9
PflFI	GACNNNGTC	2 cut(s)	146, 1353
PflMI	CCANNNNNTGG	4 cut(s)	426, 467, 1224, 1250
PinAI	ACCGGT	1 cut(s)	764
PkrI	GCNGC	8 cut(s)	238, 249, 340, 433, 925, 973, 1299, 1302
PpuMI	RGGWCCY	1 cut(s)	82
Psp5II	RGGWCCY	1 cut(s)	82
Psp6I	CCWGG	1 cut(s)	425
PspFI	CCCAGC	4 cut(s)	479, 489, 801, 1152
PspGI	CCWGG	1 cut(s)	425
PspN4I	GGNNCC	9 cut(s)	83, 84, 331, 403, 472, 478, 946, 1091, 1255
PspPI	GGNCC	8 cut(s)	82, 470, 476, 733, 851, 945, 1123, 1253
PspPPI	RGGWCCY	1 cut(s)	82
PspXI	VCTCGAGB	1 cut(s)	1127
PsuI	RGATCY	1 cut(s)	401
PsyI	GACNNNGTC	2 cut(s)	146, 1353
RsaI	GTAC	2 cut(s)	791, 1232
RsaNI	GTAC	2 cut(s)	790, 1231
RseI	CAYNNNNRTG	2 cut(s)	869, 1429
SalI	GTCGAC	1 cut(s)	149
SaqAI	TTAA	1 cut(s)	1280
SatI	GCNGC	8 cut(s)	237, 248, 339, 432, 924, 972, 1298, 1301
Sau3AI	GATC	3 cut(s)	121, 401, 1077
Sau96I	GGNCC	8 cut(s)	82, 470, 476, 733, 851, 945, 1123, 1253
ScrFI	CCNGG	3 cut(s)	80, 427, 474
SduI	GDGCHC	1 cut(s)	1417
SfaNI	GCATC	3 cut(s)	847, 848, 869
SfcI	CTRYAG	1 cut(s)	297
Sfr274I	CTCGAG	1 cut(s)	1127
SinI	GGWCC	6 cut(s)	82, 476, 733, 851, 945, 1253
SlaI	CTCGAG	1 cut(s)	1127
SmiMI	CAYNNNNRTG	2 cut(s)	869, 1429
SmlI	CTYRAG	2 cut(s)	111, 1127
SmoI	CTYRAG	2 cut(s)	111, 1127
Sse9I	AATT	8 cut(s)	230, 323, 357, 421, 834, 904, 1010, 1365
SseBI	AGGCCT	1 cut(s)	9
SsiI	CCGC	9 cut(s)	53, 65, 336, 431, 455, 575, 740, 1195, 1301
SspMI	CTAG	4 cut(s)	602, 666, 773, 1160
StuI	AGGCCT	1 cut(s)	9
StyD4I	CCNGG	3 cut(s)	78, 425, 472
StyI	CCWWGG	3 cut(s)	219, 726, 777
TaaI	ACNGT	4 cut(s)	133, 148, 263, 1021
TaiI	ACGT	3 cut(s)	588, 762, 1119
TaqI	TCGA	4 cut(s)	23, 150, 1005, 1128
TasI	AATT	8 cut(s)	230, 323, 357, 421, 834, 904, 1010, 1365
TauI	GCSGC	2 cut(s)	434, 1303
Tru1I	TTAA	1 cut(s)	1280
Tru9I	TTAA	1 cut(s)	1280
TscAI	CASTG	4 cut(s)	151, 595, 630, 754
TseFI	GTSAC	3 cut(s)	586, 955, 978
TseI	GCWGC	6 cut(s)	236, 247, 338, 923, 971, 1297
Tsp45I	GTSAC	3 cut(s)	586, 955, 978
TspDTI	ATGAA	5 cut(s)	272, 306, 1003, 1023, 1188
TspGWI	ACGGA	1 cut(s)	337
TspRI	CASTG	4 cut(s)	151, 595, 630, 754
Tth111I	GACNNNGTC	2 cut(s)	146, 1353
Van91I	CCANNNNNTGG	4 cut(s)	426, 467, 1224, 1250
VpaK11BI	GGWCC	6 cut(s)	82, 476, 733, 851, 945, 1253
XapI	RAATTY	2 cut(s)	357, 1010
XbaI	TCTAGA	1 cut(s)	665
XceI	RCATGY	1 cut(s)	1297
XcmI	CCANNNNNNNNNTGG	1 cut(s)	423
XhoI	CTCGAG	1 cut(s)	1127
XmiI	GTMKAC	2 cut(s)	150, 651
XspI	CTAG	4 cut(s)	602, 666, 773, 1160
Zsp2I	ATGCAT	1 cut(s)	862

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.