Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0006381

Physical Location & Seq

Genomic Coordinates Reverse (-)

18915902 .. 18916225

Gene Structure 324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g27691.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGAACGCCTTTAAGCACCAGCACTCTAATGCTTCATGGGAGGTGTTTGTTAGTGAGTTTCTAGAGCACTTCGGTGCCTGCAACTCCGCCGACTTCAAGGCTGTTTTATCTCATCTGCAACAAATCTCGTCAATGGATGCTTTCATCACTGAGTTCATGACGTTGTCTTGTCATGTTTCGGACTGGTCCAACCTGGATCTCTTACCCATCTTCATCGGGGGCCTCAAACCGAAGCTCCGACACGACATCGATGTGATGCAACCTCGAACGTTGGTCGCCGCCCAGTGCATGGCTCGATGCTATGAGCGCAAATTGGCCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVP_2 RVT_1 Retrotrans_gag gag-asp_proteas rve

Protein Analysis

108

Amino Acids

12.19

Weight (kDa)

6.26

Isoelectric Point (pI)

29.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ty3_capsid	PF19259	5 - 99	1.9e-08	Ty3 transposon capsid-like protein
Retrotrans_gag	PF03732	7 - 77	3.2e-06	Retrotransposon gag protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006381)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06201 FvH4_1g08061 FvH4_1g08061 FvH4_5g27691 FvH4_6g16962 FvH4_7g30611
rosa_chinensis	RchiOBHm_Chr2g0094121 RchiOBHm_Chr6g0296601
rosa_laevigata	RLG00000008247 RLG00000016457
rosa_roxburghii	Rroxscaffold_2G00076380 Rroxscaffold_2G00132740 Rroxscaffold_2G00147460 Rroxscaffold_3G00257090 Rroxscaffold_7G00171340
rosa_rugosa	Rorug03G0253300 Rorug03G0304200
rosa_samantha	Rh1DG093900 Rh2AG088700 Rh2AG365300 Rh2BG088800 Rh2BG325600 Rh2CG091200 Rh2DG087800 Rh4AG227300 Rh4CG009100
rosa_wichuraiana	Rw4G001570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	74
AccB7I	CCANNNNNTGG	1 cut(s)	289
AciI	CCGC	2 cut(s)	87, 279
AclI	AACGTT	1 cut(s)	269
AclWI	GGATC	1 cut(s)	204
AcoI	YGGCCR	1 cut(s)	315
AfiI	CCNNNNNNNGG	1 cut(s)	289
AgsI	TTSAA	1 cut(s)	97
AjnI	CCWGG	1 cut(s)	192
AleI	CACNNNNGTG	1 cut(s)	72
AluBI	AGCT	1 cut(s)	235
AluI	AGCT	1 cut(s)	235
Alw21I	GWGCWC	1 cut(s)	69
AlwI	GGATC	1 cut(s)	204
AoxI	GGCC	2 cut(s)	220, 315
AspLEI	GCGC	1 cut(s)	309
AspS9I	GGNCC	2 cut(s)	186, 220
AvaII	GGWCC	1 cut(s)	186
BalI	TGGCCA	1 cut(s)	317
BanI	GGYRCC	1 cut(s)	74
Bbv12I	GWGCWC	1 cut(s)	69
BccI	CCATC	1 cut(s)	215
BciT130I	CCWGG	1 cut(s)	194
BfaI	CTAG	1 cut(s)	62
BisI	GCNGC	1 cut(s)	279
BlsI	GCNGC	1 cut(s)	280
Bme1390I	CCNGG	1 cut(s)	194
Bme18I	GGWCC	1 cut(s)	186
BmgT120I	GGNCC	2 cut(s)	186, 220
BmiI	GGNNCC	2 cut(s)	76, 221
BmrFI	CCNGG	1 cut(s)	194
BmrI	ACTGGG	1 cut(s)	277
BmsI	GCATC	3 cut(s)	127, 246, 287
BmuI	ACTGGG	1 cut(s)	277
Bsa29I	ATCGAT	1 cut(s)	249
BsaXI	ACNNNNNCTCC	2 cut(s)	219, 249
Bsc4I	CCNNNNNNNGG	1 cut(s)	289
Bse1I	ACTGG	2 cut(s)	188, 283
BseBI	CCWGG	1 cut(s)	194
BseCI	ATCGAT	1 cut(s)	249
BseGI	GGATG	1 cut(s)	142
BseLI	CCNNNNNNNGG	1 cut(s)	289
BseMII	CTCAG	1 cut(s)	141
BseNI	ACTGG	2 cut(s)	188, 283
BshFI	GGCC	2 cut(s)	222, 317
BshNI	GGYRCC	1 cut(s)	74
BshVI	ATCGAT	1 cut(s)	249
BsiHKAI	GWGCWC	1 cut(s)	69
BslI	CCNNNNNNNGG	1 cut(s)	289
BsnI	GGCC	2 cut(s)	222, 317
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp143I	GATC	1 cut(s)	196
BspACI	CCGC	2 cut(s)	87, 279
BspANI	GGCC	2 cut(s)	222, 317
BspCNI	CTCAG	1 cut(s)	142
BspDI	ATCGAT	1 cut(s)	249
BspHI	TCATGA	1 cut(s)	156
BspLI	GGNNCC	2 cut(s)	76, 221
BspPI	GGATC	1 cut(s)	204
BspT107I	GGYRCC	1 cut(s)	74
BsrI	ACTGG	2 cut(s)	188, 283
BssMI	GATC	1 cut(s)	196
Bst2UI	CCWGG	1 cut(s)	194
BstC8I	GCNNGC	1 cut(s)	79
BstDEI	CTNAG	1 cut(s)	150
BstF5I	GGATG	1 cut(s)	142
BstHHI	GCGC	1 cut(s)	309
BstKTI	GATC	1 cut(s)	199
BstMBI	GATC	1 cut(s)	196
BstMWI	GCNNNNNNNGC	1 cut(s)	306
BstNI	CCWGG	1 cut(s)	194
BstSCI	CCNGG	1 cut(s)	192
BstX2I	RGATCY	1 cut(s)	196
BstYI	RGATCY	1 cut(s)	196
Bsu15I	ATCGAT	1 cut(s)	249
BsuRI	GGCC	2 cut(s)	222, 317
BsuTUI	ATCGAT	1 cut(s)	249
BtsCI	GGATG	1 cut(s)	142
BtsIMutI	CAGTG	2 cut(s)	147, 290
Cac8I	GCNNGC	1 cut(s)	79
CciI	TCATGA	1 cut(s)	156
CfoI	GCGC	1 cut(s)	309
Cfr13I	GGNCC	2 cut(s)	186, 220
ClaI	ATCGAT	1 cut(s)	249
CviAII	CATG	4 cut(s)	36, 157, 173, 289
CviJI	RGCY	5 cut(s)	101, 222, 235, 293, 317
CviKI_1	RGCY	5 cut(s)	101, 222, 235, 293, 317
DdeI	CTNAG	1 cut(s)	150
DpnI	GATC	1 cut(s)	198
DpnII	GATC	1 cut(s)	196
EaeI	YGGCCR	1 cut(s)	315
EciI	GGCGGA	1 cut(s)	76
Eco47I	GGWCC	1 cut(s)	186
EcoO109I	RGGNCCY	1 cut(s)	220
EcoRII	CCWGG	1 cut(s)	192
FaeI	CATG	4 cut(s)	39, 160, 176, 292
FaiI	YATR	5 cut(s)	37, 158, 174, 290, 303
FatI	CATG	4 cut(s)	35, 156, 172, 288
Fnu4HI	GCNGC	1 cut(s)	279
FokI	GGATG	1 cut(s)	149
Fsp4HI	GCNGC	1 cut(s)	279
FspBI	CTAG	1 cut(s)	62
GlaI	GCGC	1 cut(s)	308
GluI	GCNGC	1 cut(s)	279
HaeIII	GGCC	2 cut(s)	222, 317
HhaI	GCGC	1 cut(s)	309
Hin1II	CATG	4 cut(s)	39, 160, 176, 292
Hin6I	GCGC	1 cut(s)	307
HinP1I	GCGC	1 cut(s)	307
Hpy188I	TCNGA	2 cut(s)	181, 239
Hpy188III	TCNNGA	2 cut(s)	62, 157
HpyCH4IV	ACGT	2 cut(s)	161, 269
HpyCH4V	TGCA	4 cut(s)	81, 118, 259, 288
HpyF10VI	GCNNNNNNNGC	1 cut(s)	306
HpyF3I	CTNAG	1 cut(s)	150
HpySE526I	ACGT	2 cut(s)	161, 269
Hsp92II	CATG	4 cut(s)	39, 160, 176, 292
HspAI	GCGC	1 cut(s)	307
Kzo9I	GATC	1 cut(s)	196
LmnI	GCTCC	1 cut(s)	240
LpnPI	CCDG	6 cut(s)	32, 91, 169, 179, 206, 296
LweI	GCATC	3 cut(s)	127, 246, 287
MaeI	CTAG	1 cut(s)	62
MaeII	ACGT	2 cut(s)	161, 269
MalI	GATC	1 cut(s)	198
MboI	GATC	1 cut(s)	196
MboII	GAAGA	1 cut(s)	202
MflI	RGATCY	1 cut(s)	196
MhlI	GDGCHC	1 cut(s)	69
MlsI	TGGCCA	1 cut(s)	317
MluCI	AATT	2 cut(s)	311, 319
MluNI	TGGCCA	1 cut(s)	317
MmeI	TCCRAC	2 cut(s)	213, 262
MnlI	CCTC	3 cut(s)	34, 233, 273
Mox20I	TGGCCA	1 cut(s)	317
MscI	TGGCCA	1 cut(s)	317
MseI	TTAA	2 cut(s)	12, 322
MslI	CAYNNNNRTG	3 cut(s)	27, 72, 251
Msp20I	TGGCCA	1 cut(s)	317
MspR9I	CCNGG	1 cut(s)	194
MvaI	CCWGG	1 cut(s)	194
MwoI	GCNNNNNNNGC	1 cut(s)	306
NdeII	GATC	1 cut(s)	196
NlaIII	CATG	4 cut(s)	39, 160, 176, 292
NlaIV	GGNNCC	2 cut(s)	76, 221
OliI	CACNNNNGTG	1 cut(s)	72
PagI	TCATGA	1 cut(s)	156
PflFI	GACNNNGTC	1 cut(s)	163
PflMI	CCANNNNNTGG	1 cut(s)	289
PkrI	GCNGC	1 cut(s)	280
Psp1406I	AACGTT	1 cut(s)	269
Psp6I	CCWGG	1 cut(s)	192
PspGI	CCWGG	1 cut(s)	192
PspN4I	GGNNCC	2 cut(s)	76, 221
PspPI	GGNCC	2 cut(s)	186, 220
PsuI	RGATCY	1 cut(s)	196
PsyI	GACNNNGTC	1 cut(s)	163
RseI	CAYNNNNRTG	3 cut(s)	27, 72, 251
SaqAI	TTAA	2 cut(s)	12, 322
SatI	GCNGC	1 cut(s)	279
Sau3AI	GATC	1 cut(s)	196
Sau96I	GGNCC	2 cut(s)	186, 220
ScrFI	CCNGG	1 cut(s)	194
SduI	GDGCHC	1 cut(s)	69
SetI	ASST	6 cut(s)	45, 164, 195, 237, 265, 272
SfaNI	GCATC	3 cut(s)	127, 246, 287
SinI	GGWCC	1 cut(s)	186
SmiMI	CAYNNNNRTG	3 cut(s)	27, 72, 251
Sse9I	AATT	2 cut(s)	311, 319
SsiI	CCGC	2 cut(s)	87, 279
SspMI	CTAG	1 cut(s)	62
StyD4I	CCNGG	1 cut(s)	192
TaiI	ACGT	2 cut(s)	164, 272
TaqI	TCGA	3 cut(s)	249, 265, 295
TasI	AATT	2 cut(s)	311, 319
TauI	GCSGC	1 cut(s)	281
Tru1I	TTAA	2 cut(s)	12, 322
Tru9I	TTAA	2 cut(s)	12, 322
TscAI	CASTG	2 cut(s)	154, 290
TspDTI	ATGAA	5 cut(s)	17, 24, 133, 145, 202
TspRI	CASTG	2 cut(s)	154, 290
Tth111I	GACNNNGTC	1 cut(s)	163
Van91I	CCANNNNNTGG	1 cut(s)	289
VpaK11BI	GGWCC	1 cut(s)	186
XbaI	TCTAGA	1 cut(s)	61
XspI	CTAG	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.