Rh4CG009100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0006381
Physical Location & Seq
Reverse (-)
1592695 .. 1592889
195 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG009100.1

Sequence Viewer

Length: 195 bp
ATGAGCTTCAGATCTCCACATTCTCCATCTCCACCAAGCAAACTGAGCTCCAGACCTCAATCTCATCTCTACAAGCTCATTGCCCTCGAGAACCTCCCCGTCTTCCATGGCCGCGCCGGCAACGAGAACGCCTTCTACTGGCTCACCGCCACCGAGCGCCACTTCGGCTACCTCGACATCCCCGCCGCCGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

64

Amino Acids

7.23

Weight (kDa)

8.22

Isoelectric Point (pI)

82.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 114
AciI CCGC 4 cut(s) 112, 147, 183, 186
AcoI YGGCCR 1 cut(s) 109
AfiI CCNNNNNNNGG 1 cut(s) 138
AluBI AGCT 3 cut(s) 6, 48, 76
AluI AGCT 3 cut(s) 6, 48, 76
Alw21I GWGCWC 1 cut(s) 50
Ama87I CYCGRG 1 cut(s) 86
AoxI GGCC 1 cut(s) 109
Asp700I GAANNNNTTC 1 cut(s) 131
AspLEI GCGC 2 cut(s) 116, 159
AsuHPI GGTGA 1 cut(s) 136
AvaI CYCGRG 1 cut(s) 86
BanII GRGCYC 1 cut(s) 50
BbsI GAAGAC 1 cut(s) 94
Bbv12I GWGCWC 1 cut(s) 50
BccI CCATC 1 cut(s) 34
BfoI RGCGCY 1 cut(s) 160
BglI GCCNNNNNGGC 2 cut(s) 117, 165
BglII AGATCT 1 cut(s) 11
BisI GCNGC 2 cut(s) 112, 186
BlsI GCNGC 2 cut(s) 113, 187
BmeT110I CYCGRG 1 cut(s) 86
BpiI GAAGAC 1 cut(s) 94
BpmI CTGGAG 1 cut(s) 34
BsaJI CCNNGG 1 cut(s) 106
Bsc4I CCNNNNNNNGG 1 cut(s) 138
Bse118I RCCGGY 1 cut(s) 116
Bse1I ACTGG 1 cut(s) 143
Bse3DI GCAATG 1 cut(s) 78
BseDI CCNNGG 1 cut(s) 106
BseGI GGATG 1 cut(s) 177
BseLI CCNNNNNNNGG 1 cut(s) 138
BseMI GCAATG 1 cut(s) 78
BseMII CTCAG 1 cut(s) 35
BseNI ACTGG 1 cut(s) 143
Bsh1236I CGCG 1 cut(s) 114
BshFI GGCC 1 cut(s) 111
BsiHKAI GWGCWC 1 cut(s) 50
BsiHKCI CYCGRG 1 cut(s) 86
BsiSI CCGG 1 cut(s) 117
BslI CCNNNNNNNGG 1 cut(s) 138
BsnI GGCC 1 cut(s) 111
BsoBI CYCGRG 1 cut(s) 86
Bsp1286I GDGCHC 1 cut(s) 50
Bsp143I GATC 1 cut(s) 11
Bsp19I CCATGG 1 cut(s) 106
BspACI CCGC 4 cut(s) 112, 147, 183, 186
BspANI GGCC 1 cut(s) 111
BspCNI CTCAG 1 cut(s) 36
BspFNI CGCG 1 cut(s) 114
BsrDI GCAATG 1 cut(s) 78
BsrFI RCCGGY 1 cut(s) 116
BsrI ACTGG 1 cut(s) 143
BssAI RCCGGY 1 cut(s) 116
BssECI CCNNGG 1 cut(s) 106
BssMI GATC 1 cut(s) 11
BssT1I CCWWGG 1 cut(s) 106
BstC8I GCNNGC 1 cut(s) 118
BstDEI CTNAG 1 cut(s) 44
BstDSI CCRYGG 1 cut(s) 106
BstF5I GGATG 1 cut(s) 177
BstFNI CGCG 1 cut(s) 114
BstH2I RGCGCY 1 cut(s) 160
BstHHI GCGC 2 cut(s) 116, 159
BstKTI GATC 1 cut(s) 14
BstMBI GATC 1 cut(s) 11
BstMWI GCNNNNNNNGC 3 cut(s) 45, 117, 165
BstUI CGCG 1 cut(s) 114
BstV2I GAAGAC 1 cut(s) 94
BstX2I RGATCY 1 cut(s) 11
BstYI RGATCY 1 cut(s) 11
BsuRI GGCC 1 cut(s) 111
BtgI CCRYGG 1 cut(s) 106
BtsCI GGATG 1 cut(s) 177
Cac8I GCNNGC 1 cut(s) 118
CfoI GCGC 2 cut(s) 116, 159
Cfr10I RCCGGY 1 cut(s) 116
CviAII CATG 1 cut(s) 107
CviJI RGCY 6 cut(s) 6, 48, 76, 111, 142, 168
CviKI_1 RGCY 6 cut(s) 6, 48, 76, 111, 142, 168
DdeI CTNAG 1 cut(s) 44
DpnI GATC 1 cut(s) 13
DpnII GATC 1 cut(s) 11
EaeI YGGCCR 1 cut(s) 109
Ecl136II GAGCTC 1 cut(s) 48
Eco130I CCWWGG 1 cut(s) 106
Eco24I GRGCYC 1 cut(s) 50
Eco53kI GAGCTC 1 cut(s) 48
Eco88I CYCGRG 1 cut(s) 86
EcoICRI GAGCTC 1 cut(s) 48
EcoT14I CCWWGG 1 cut(s) 106
EcoT38I GRGCYC 1 cut(s) 50
ErhI CCWWGG 1 cut(s) 106
FaeI CATG 1 cut(s) 110
FaiI YATR 1 cut(s) 108
FatI CATG 1 cut(s) 106
FauI CCCGC 1 cut(s) 190
Fnu4HI GCNGC 2 cut(s) 112, 186
FokI GGATG 1 cut(s) 164
FriOI GRGCYC 1 cut(s) 50
Fsp4HI GCNGC 2 cut(s) 112, 186
GlaI GCGC 2 cut(s) 115, 158
GluI GCNGC 2 cut(s) 112, 186
GsuI CTGGAG 1 cut(s) 34
HaeII RGCGCY 1 cut(s) 160
HaeIII GGCC 1 cut(s) 111
HapII CCGG 1 cut(s) 117
HhaI GCGC 2 cut(s) 116, 159
Hin1II CATG 1 cut(s) 110
Hin6I GCGC 2 cut(s) 114, 157
HinP1I GCGC 2 cut(s) 114, 157
HpaII CCGG 1 cut(s) 117
HphI GGTGA 1 cut(s) 136
Hpy188I TCNGA 1 cut(s) 11
Hpy188III TCNNGA 2 cut(s) 51, 88
HpyAV CCTTC 1 cut(s) 142
HpyF10VI GCNNNNNNNGC 3 cut(s) 45, 117, 165
HpyF3I CTNAG 1 cut(s) 44
Hsp92II CATG 1 cut(s) 110
HspAI GCGC 2 cut(s) 114, 157
KroI GCCGGC 1 cut(s) 116
KroNI GCCGGC 1 cut(s) 118
Kzo9I GATC 1 cut(s) 11
LmnI GCTCC 1 cut(s) 53
LpnPI CCDG 3 cut(s) 64, 124, 130
MalI GATC 1 cut(s) 13
MboI GATC 1 cut(s) 11
MboII GAAGA 1 cut(s) 94
MflI RGATCY 1 cut(s) 11
MhlI GDGCHC 1 cut(s) 50
MnlI CCTC 4 cut(s) 66, 95, 104, 182
MroNI GCCGGC 1 cut(s) 116
MroXI GAANNNNTTC 1 cut(s) 131
MspI CCGG 1 cut(s) 117
MvnI CGCG 1 cut(s) 114
MwoI GCNNNNNNNGC 3 cut(s) 45, 117, 165
NaeI GCCGGC 1 cut(s) 118
NcoI CCATGG 1 cut(s) 106
NdeII GATC 1 cut(s) 11
NgoMIV GCCGGC 1 cut(s) 116
NlaIII CATG 1 cut(s) 110
PaeR7I CTCGAG 1 cut(s) 86
PcsI WCGNNNNNNNCGW 1 cut(s) 171
PdiI GCCGGC 1 cut(s) 118
PdmI GAANNNNTTC 1 cut(s) 131
PkrI GCNGC 2 cut(s) 113, 187
Psp124BI GAGCTC 1 cut(s) 50
PsrI GAACNNNNNNTAC 2 cut(s) 119, 151
PsuI RGATCY 1 cut(s) 11
SacI GAGCTC 1 cut(s) 50
SatI GCNGC 2 cut(s) 112, 186
Sau3AI GATC 1 cut(s) 11
SduI GDGCHC 1 cut(s) 50
SetI ASST 6 cut(s) 8, 50, 58, 78, 96, 174
Sfr274I CTCGAG 1 cut(s) 86
SlaI CTCGAG 1 cut(s) 86
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
SsiI CCGC 4 cut(s) 112, 147, 183, 186
SstI GAGCTC 1 cut(s) 50
StyI CCWWGG 1 cut(s) 106
TaqI TCGA 2 cut(s) 87, 174
TauI GCSGC 2 cut(s) 114, 188
XhoI CTCGAG 1 cut(s) 86
XmnI GAANNNNTTC 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.