Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0006381

Physical Location & Seq

Genomic Coordinates Forward (+)

27714130 .. 27715577

Gene Structure 1448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008247

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGAGCTTCAGATCTCCACACTCTCCATCTCCACCAAGCAAACCGAGCTCCAGACCTCAGTCTCATCTTCACAACCTCATTGCCTTCGAGAACCTCCTCATCTTCCACGGCCTCGCTGGCAACGAGAACGTCGTCGACTGGCTCACCGCCACCGAGTGCTACTTTGCCTACCTCAACATCCCCTTCGCCGACCGAGTCAAGATCACCCCCATTCGCTTGTGCGGAGACGCGAGCCCCTGGATGTGCTTGTACGAGTCTCGGTATGAGTTTCTACAGTTTTTCCGGCCAGAGACGCTCATCGCCGCCGTGTGTAATTTGGAGCAGAAGAGGTCGGTGAAGGAGTATGAGGTGGAGTTTTTGAGGCTGGCTGCCGGAGGTGGAGATCTTAGAGCCATGCGTATTAAGATAACCACTGCCGGATCTGGTCGGAACCAAATCAGCGAAGTAGATGCATCTCAGACCAATCCATGCTTGCATCCTTGTCAGAAAATCGGATCCTTGTCAACCGGAGCCACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 Retrotrans_gag

Protein Analysis

173

Amino Acids

19.18

Weight (kDa)

7.64

Isoelectric Point (pI)

54.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006381)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06201 FvH4_1g08061 FvH4_1g08061 FvH4_5g27691 FvH4_6g16962 FvH4_7g30611
rosa_chinensis	RchiOBHm_Chr2g0094121 RchiOBHm_Chr6g0296601
rosa_laevigata	RLG00000008247 RLG00000016457
rosa_roxburghii	Rroxscaffold_2G00076380 Rroxscaffold_2G00132740 Rroxscaffold_2G00147460 Rroxscaffold_3G00257090 Rroxscaffold_7G00171340
rosa_rugosa	Rorug03G0253300 Rorug03G0304200
rosa_samantha	Rh1DG093900 Rh2AG088700 Rh2AG365300 Rh2BG088800 Rh2BG325600 Rh2CG091200 Rh2DG087800 Rh4AG227300 Rh4CG009100
rosa_wichuraiana	Rw4G001570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	135
AccII	CGCG	1 cut(s)	230
AciI	CCGC	3 cut(s)	147, 222, 303
AclWI	GGATC	3 cut(s)	427, 489, 502
AcoI	YGGCCR	1 cut(s)	284
AdeI	CACNNNGTG	1 cut(s)	156
AfaI	GTAC	1 cut(s)	251
AjnI	CCWGG	1 cut(s)	236
AluBI	AGCT	2 cut(s)	6, 48
AluI	AGCT	2 cut(s)	6, 48
Alw21I	GWGCWC	1 cut(s)	50
Alw26I	GTCTC	4 cut(s)	66, 219, 261, 284
AlwI	GGATC	3 cut(s)	427, 489, 502
AoxI	GGCC	2 cut(s)	109, 284
ApeKI	GCWGC	1 cut(s)	368
AsuHPI	GGTGA	3 cut(s)	136, 196, 346
BamHI	GGATCC	1 cut(s)	494
BanII	GRGCYC	2 cut(s)	50, 236
Bbv12I	GWGCWC	1 cut(s)	50
BbvI	GCAGC	1 cut(s)	355
BccI	CCATC	1 cut(s)	34
BceAI	ACGGC	2 cut(s)	124, 290
BcgI	CGANNNNNNTGC	2 cut(s)	431, 465
BciT130I	CCWGG	1 cut(s)	238
BcoDI	GTCTC	4 cut(s)	66, 219, 261, 284
BfmI	CTRYAG	1 cut(s)	272
BglI	GCCNNNNNGGC	1 cut(s)	117
BglII	AGATCT	2 cut(s)	11, 382
BisI	GCNGC	2 cut(s)	303, 369
BlsI	GCNGC	2 cut(s)	304, 370
Bme1390I	CCNGG	1 cut(s)	238
BmiI	GGNNCC	3 cut(s)	431, 496, 511
BmrFI	CCNGG	1 cut(s)	238
BmsI	GCATC	3 cut(s)	439, 461, 484
BoxI	GACNNNNGTC	1 cut(s)	58
BpmI	CTGGAG	1 cut(s)	34
BsaJI	CCNNGG	2 cut(s)	106, 236
BsaWI	WCCGGW	1 cut(s)	506
Bse1I	ACTGG	1 cut(s)	143
Bse3DI	GCAATG	1 cut(s)	78
BseBI	CCWGG	1 cut(s)	238
BseDI	CCNNGG	2 cut(s)	106, 236
BseGI	GGATG	3 cut(s)	177, 246, 475
BseMI	GCAATG	1 cut(s)	78
BseMII	CTCAG	2 cut(s)	71, 470
BseNI	ACTGG	1 cut(s)	143
BseRI	GAGGAG	1 cut(s)	86
BseXI	GCAGC	1 cut(s)	355
Bsh1236I	CGCG	1 cut(s)	230
Bsh1285I	CGRYCG	1 cut(s)	193
BshFI	GGCC	2 cut(s)	111, 286
BsiEI	CGRYCG	1 cut(s)	193
BsiHKAI	GWGCWC	1 cut(s)	50
BsiSI	CCGG	4 cut(s)	283, 372, 417, 507
BsmAI	GTCTC	4 cut(s)	66, 219, 261, 284
BsmBI	CGTCTC	2 cut(s)	219, 284
BsnI	GGCC	2 cut(s)	111, 286
Bsp1286I	GDGCHC	2 cut(s)	50, 236
Bsp143I	GATC	5 cut(s)	11, 201, 382, 419, 494
BspACI	CCGC	3 cut(s)	147, 222, 303
BspANI	GGCC	2 cut(s)	111, 286
BspCNI	CTCAG	2 cut(s)	70, 469
BspFNI	CGCG	1 cut(s)	230
BspLI	GGNNCC	3 cut(s)	431, 496, 511
BspPI	GGATC	3 cut(s)	427, 489, 502
BsrDI	GCAATG	1 cut(s)	78
BsrI	ACTGG	1 cut(s)	143
BssECI	CCNNGG	2 cut(s)	106, 236
BssMI	GATC	5 cut(s)	11, 201, 382, 419, 494
Bst2UI	CCWGG	1 cut(s)	238
Bst4CI	ACNGT	1 cut(s)	276
Bst6I	CTCTTC	1 cut(s)	320
BstC8I	GCNNGC	4 cut(s)	118, 232, 366, 473
BstDEI	CTNAG	4 cut(s)	57, 386, 456, 516
BstDSI	CCRYGG	1 cut(s)	106
BstF5I	GGATG	3 cut(s)	177, 246, 475
BstFNI	CGCG	1 cut(s)	230
BstKTI	GATC	5 cut(s)	14, 204, 385, 422, 497
BstMAI	GTCTC	4 cut(s)	66, 219, 261, 284
BstMBI	GATC	5 cut(s)	11, 201, 382, 419, 494
BstMCI	CGRYCG	1 cut(s)	193
BstMWI	GCNNNNNNNGC	3 cut(s)	45, 117, 292
BstNI	CCWGG	1 cut(s)	238
BstPAI	GACNNNNGTC	1 cut(s)	58
BstSCI	CCNGG	1 cut(s)	236
BstSFI	CTRYAG	1 cut(s)	272
BstUI	CGCG	1 cut(s)	230
BstV1I	GCAGC	1 cut(s)	355
BstX2I	RGATCY	4 cut(s)	11, 382, 419, 494
BstYI	RGATCY	4 cut(s)	11, 382, 419, 494
BsuRI	GGCC	2 cut(s)	111, 286
BtgI	CCRYGG	1 cut(s)	106
BtgZI	GCGATG	1 cut(s)	283
BtsCI	GGATG	3 cut(s)	177, 246, 475
BtsI	GCAGTG	1 cut(s)	411
BtsIMutI	CAGTG	1 cut(s)	411
Cac8I	GCNNGC	4 cut(s)	118, 232, 366, 473
CseI	GACGC	2 cut(s)	236, 301
Csp6I	GTAC	1 cut(s)	250
CviAII	CATG	2 cut(s)	394, 468
CviQI	GTAC	1 cut(s)	250
DdeI	CTNAG	4 cut(s)	57, 386, 456, 516
DpnI	GATC	5 cut(s)	13, 203, 384, 421, 496
DpnII	GATC	5 cut(s)	11, 201, 382, 419, 494
DraIII	CACNNNGTG	1 cut(s)	156
EaeI	YGGCCR	1 cut(s)	284
Eam1104I	CTCTTC	1 cut(s)	320
EarI	CTCTTC	1 cut(s)	320
Ecl136II	GAGCTC	1 cut(s)	48
Eco24I	GRGCYC	2 cut(s)	50, 236
Eco53kI	GAGCTC	1 cut(s)	48
EcoICRI	GAGCTC	1 cut(s)	48
EcoRII	CCWGG	1 cut(s)	236
EcoT22I	ATGCAT	1 cut(s)	454
EcoT38I	GRGCYC	2 cut(s)	50, 236
Esp3I	CGTCTC	2 cut(s)	219, 284
FaeI	CATG	2 cut(s)	397, 471
FaiI	YATR	4 cut(s)	264, 345, 395, 469
FatI	CATG	2 cut(s)	393, 467
FblI	GTMKAC	1 cut(s)	135
Fnu4HI	GCNGC	2 cut(s)	303, 369
FokI	GGATG	3 cut(s)	164, 253, 462
FriOI	GRGCYC	2 cut(s)	50, 236
Fsp4HI	GCNGC	2 cut(s)	303, 369
GluI	GCNGC	2 cut(s)	303, 369
GsuI	CTGGAG	1 cut(s)	34
HaeIII	GGCC	2 cut(s)	111, 286
HapII	CCGG	4 cut(s)	283, 372, 417, 507
HgaI	GACGC	2 cut(s)	236, 301
Hin1II	CATG	2 cut(s)	397, 471
HincII	GTYRAC	2 cut(s)	136, 504
HindII	GTYRAC	2 cut(s)	136, 504
HinfI	GANTC	2 cut(s)	195, 254
HpaII	CCGG	4 cut(s)	283, 372, 417, 507
HphI	GGTGA	3 cut(s)	136, 196, 346
Hpy166II	GTNNAC	2 cut(s)	136, 504
Hpy188I	TCNGA	5 cut(s)	11, 429, 459, 486, 494
Hpy188III	TCNNGA	3 cut(s)	51, 88, 199
Hpy8I	GTNNAC	2 cut(s)	136, 504
Hpy99I	CGWCG	2 cut(s)	134, 137
HpyAV	CCTTC	3 cut(s)	94, 193, 331
HpyCH4III	ACNGT	1 cut(s)	276
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	2 cut(s)	452, 475
HpyF10VI	GCNNNNNNNGC	3 cut(s)	45, 117, 292
HpyF3I	CTNAG	4 cut(s)	57, 386, 456, 516
HpySE526I	ACGT	1 cut(s)	129
Hsp92II	CATG	2 cut(s)	397, 471
Kzo9I	GATC	5 cut(s)	11, 201, 382, 419, 494
LmnI	GCTCC	3 cut(s)	53, 319, 509
Lsp1109I	GCAGC	1 cut(s)	355
LweI	GCATC	3 cut(s)	439, 461, 484
MaeII	ACGT	1 cut(s)	129
MalI	GATC	5 cut(s)	13, 203, 384, 421, 496
MboI	GATC	5 cut(s)	11, 201, 382, 419, 494
MboII	GAAGA	3 cut(s)	59, 94, 337
MflI	RGATCY	4 cut(s)	11, 382, 419, 494
MhlI	GDGCHC	2 cut(s)	50, 236
MluCI	AATT	1 cut(s)	313
MlyI	GAGTC	2 cut(s)	204, 263
MmeI	TCCRAC	1 cut(s)	407
Mph1103I	ATGCAT	1 cut(s)	454
MseI	TTAA	1 cut(s)	402
MspI	CCGG	4 cut(s)	283, 372, 417, 507
MspR9I	CCNGG	1 cut(s)	238
MvaI	CCWGG	1 cut(s)	238
MvnI	CGCG	1 cut(s)	230
MwoI	GCNNNNNNNGC	3 cut(s)	45, 117, 292
NdeII	GATC	5 cut(s)	11, 201, 382, 419, 494
NlaIII	CATG	2 cut(s)	397, 471
NlaIV	GGNNCC	3 cut(s)	431, 496, 511
NsiI	ATGCAT	1 cut(s)	454
PcsI	WCGNNNNNNNCGW	2 cut(s)	120, 129
PflFI	GACNNNGTC	1 cut(s)	194
PkrI	GCNGC	2 cut(s)	304, 370
PleI	GAGTC	2 cut(s)	203, 262
PpsI	GAGTC	2 cut(s)	203, 262
PshAI	GACNNNNGTC	1 cut(s)	58
Psp124BI	GAGCTC	1 cut(s)	50
Psp6I	CCWGG	1 cut(s)	236
PspGI	CCWGG	1 cut(s)	236
PspN4I	GGNNCC	3 cut(s)	431, 496, 511
PsuI	RGATCY	4 cut(s)	11, 382, 419, 494
PsyI	GACNNNGTC	1 cut(s)	194
RsaI	GTAC	1 cut(s)	251
RsaNI	GTAC	1 cut(s)	250
SacI	GAGCTC	1 cut(s)	50
SalI	GTCGAC	1 cut(s)	134
SaqAI	TTAA	1 cut(s)	402
SatI	GCNGC	2 cut(s)	303, 369
Sau3AI	GATC	5 cut(s)	11, 201, 382, 419, 494
SchI	GAGTC	2 cut(s)	204, 263
ScrFI	CCNGG	1 cut(s)	238
SduI	GDGCHC	2 cut(s)	50, 236
SfaNI	GCATC	3 cut(s)	439, 461, 484
SfcI	CTRYAG	1 cut(s)	272
Sse9I	AATT	1 cut(s)	313
SsiI	CCGC	3 cut(s)	147, 222, 303
SstI	GAGCTC	1 cut(s)	50
StyD4I	CCNGG	1 cut(s)	236
TaaI	ACNGT	1 cut(s)	276
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	2 cut(s)	87, 135
TaqII	GACCGA	1 cut(s)	207
TasI	AATT	1 cut(s)	313
TauI	GCSGC	1 cut(s)	305
Tru1I	TTAA	1 cut(s)	402
Tru9I	TTAA	1 cut(s)	402
TscAI	CASTG	1 cut(s)	418
TseI	GCWGC	1 cut(s)	368
TspRI	CASTG	1 cut(s)	418
Tth111I	GACNNNGTC	1 cut(s)	194
XcmI	CCANNNNNNNNNTGG	1 cut(s)	113
XmiI	GTMKAC	1 cut(s)	135
Zsp2I	ATGCAT	1 cut(s)	454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.