Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0006381

Physical Location & Seq

Genomic Coordinates Forward (+)

17756549 .. 17756857

Gene Structure 309 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG093900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGAGCTTCAAATCTCCACACTCTCCATCTCCACCAAGCAAACCGAGCTCCAGACCTCAGGCTCATCTTCACAACCTCATTGCCTTCGAGAACCTCCTCATCTTCCACGGCCGCGCTGGCAACGAGAACGCCGTCGACTGGCCCACCGCCACCGAGTGCCACTTCGCCTACCTCGACATCCCCTTCGCCGACCGAGTCAAGATCGCCCCCACTAGCTTGCGCGGCGACGCGAGCCCCTATATGTGCTTGTACGAGTCTCGGTATCCTGCGAGTGCACCATGGTTGACTTTCATGTATGAGTTTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

102

Amino Acids

11.53

Weight (kDa)

6.49

Isoelectric Point (pI)

69.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006381)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06201 FvH4_1g08061 FvH4_1g08061 FvH4_5g27691 FvH4_6g16962 FvH4_7g30611
rosa_chinensis	RchiOBHm_Chr2g0094121 RchiOBHm_Chr6g0296601
rosa_laevigata	RLG00000008247 RLG00000016457
rosa_roxburghii	Rroxscaffold_2G00076380 Rroxscaffold_2G00132740 Rroxscaffold_2G00147460 Rroxscaffold_3G00257090 Rroxscaffold_7G00171340
rosa_rugosa	Rorug03G0253300 Rorug03G0304200
rosa_samantha	Rh1DG093900 Rh2AG088700 Rh2AG365300 Rh2BG088800 Rh2BG325600 Rh2CG091200 Rh2DG087800 Rh4AG227300 Rh4CG009100
rosa_wichuraiana	Rw4G001570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	135
AccII	CGCG	3 cut(s)	114, 222, 230
AciI	CCGC	3 cut(s)	112, 147, 222
AcoI	YGGCCR	1 cut(s)	109
AdeI	CACNNNGTG	1 cut(s)	156
AfaI	GTAC	1 cut(s)	251
AfiI	CCNNNNNNNGG	1 cut(s)	138
AgsI	TTSAA	1 cut(s)	10
AluBI	AGCT	3 cut(s)	6, 48, 216
AluI	AGCT	3 cut(s)	6, 48, 216
Alw21I	GWGCWC	2 cut(s)	50, 277
Alw26I	GTCTC	1 cut(s)	261
Alw44I	GTGCAC	1 cut(s)	273
AoxI	GGCC	2 cut(s)	109, 140
ApaLI	GTGCAC	1 cut(s)	273
ArsI	GACNNNNNNTTYG	2 cut(s)	167, 199
AspLEI	GCGC	2 cut(s)	116, 222
AspS9I	GGNCC	1 cut(s)	141
AxyI	CCTNAGG	1 cut(s)	57
BaeGI	GKGCMC	1 cut(s)	277
BanII	GRGCYC	2 cut(s)	50, 236
Bbv12I	GWGCWC	2 cut(s)	50, 277
BccI	CCATC	1 cut(s)	34
BceAI	ACGGC	2 cut(s)	116, 124
BciVI	GTATCC	1 cut(s)	273
BcoDI	GTCTC	1 cut(s)	261
BfaI	CTAG	1 cut(s)	213
BfmI	CTRYAG	1 cut(s)	305
BfuI	GTATCC	1 cut(s)	273
BglI	GCCNNNNNGGC	1 cut(s)	117
BisI	GCNGC	2 cut(s)	112, 223
BlsI	GCNGC	2 cut(s)	113, 224
BmgT120I	GGNCC	1 cut(s)	141
BpmI	CTGGAG	1 cut(s)	34
BsaJI	CCNNGG	2 cut(s)	106, 278
Bsc4I	CCNNNNNNNGG	1 cut(s)	138
Bse1I	ACTGG	1 cut(s)	143
Bse21I	CCTNAGG	1 cut(s)	57
Bse3DI	GCAATG	1 cut(s)	78
BseDI	CCNNGG	2 cut(s)	106, 278
BseGI	GGATG	1 cut(s)	177
BseLI	CCNNNNNNNGG	1 cut(s)	138
BseMI	GCAATG	1 cut(s)	78
BseMII	CTCAG	1 cut(s)	71
BseNI	ACTGG	1 cut(s)	143
BseRI	GAGGAG	1 cut(s)	86
BseSI	GKGCMC	1 cut(s)	277
BseX3I	CGGCCG	1 cut(s)	109
Bsh1236I	CGCG	3 cut(s)	114, 222, 230
Bsh1285I	CGRYCG	2 cut(s)	112, 193
BshFI	GGCC	2 cut(s)	111, 142
BsiEI	CGRYCG	2 cut(s)	112, 193
BsiHKAI	GWGCWC	2 cut(s)	50, 277
BslI	CCNNNNNNNGG	1 cut(s)	138
BsmAI	GTCTC	1 cut(s)	261
BsnI	GGCC	2 cut(s)	111, 142
Bsp1286I	GDGCHC	3 cut(s)	50, 236, 277
Bsp143I	GATC	1 cut(s)	201
Bsp19I	CCATGG	1 cut(s)	278
BspACI	CCGC	3 cut(s)	112, 147, 222
BspANI	GGCC	2 cut(s)	111, 142
BspCNI	CTCAG	1 cut(s)	70
BspFNI	CGCG	3 cut(s)	114, 222, 230
BsrDI	GCAATG	1 cut(s)	78
BsrI	ACTGG	1 cut(s)	143
BssECI	CCNNGG	2 cut(s)	106, 278
BssMI	GATC	1 cut(s)	201
BssT1I	CCWWGG	1 cut(s)	278
BstC8I	GCNNGC	3 cut(s)	118, 218, 232
BstDEI	CTNAG	1 cut(s)	57
BstDSI	CCRYGG	2 cut(s)	106, 278
BstF5I	GGATG	1 cut(s)	177
BstFNI	CGCG	3 cut(s)	114, 222, 230
BstHHI	GCGC	2 cut(s)	116, 222
BstKTI	GATC	1 cut(s)	204
BstMAI	GTCTC	1 cut(s)	261
BstMBI	GATC	1 cut(s)	201
BstMCI	CGRYCG	2 cut(s)	112, 193
BstMWI	GCNNNNNNNGC	4 cut(s)	45, 117, 222, 231
BstSFI	CTRYAG	1 cut(s)	305
BstSLI	GKGCMC	1 cut(s)	277
BstUI	CGCG	3 cut(s)	114, 222, 230
BstZI	CGGCCG	1 cut(s)	109
Bsu36I	CCTNAGG	1 cut(s)	57
BsuI	GTATCC	1 cut(s)	273
BsuRI	GGCC	2 cut(s)	111, 142
BtgI	CCRYGG	2 cut(s)	106, 278
BtsCI	GGATG	1 cut(s)	177
Cac8I	GCNNGC	3 cut(s)	118, 218, 232
CfoI	GCGC	2 cut(s)	116, 222
Cfr13I	GGNCC	1 cut(s)	141
CseI	GACGC	1 cut(s)	236
Csp6I	GTAC	1 cut(s)	250
CviAII	CATG	2 cut(s)	279, 292
CviJI	RGCY	7 cut(s)	6, 48, 62, 111, 142, 216, 234
CviKI_1	RGCY	7 cut(s)	6, 48, 62, 111, 142, 216, 234
CviQI	GTAC	1 cut(s)	250
DdeI	CTNAG	1 cut(s)	57
DpnI	GATC	1 cut(s)	203
DpnII	GATC	1 cut(s)	201
DraIII	CACNNNGTG	1 cut(s)	156
EaeI	YGGCCR	1 cut(s)	109
EagI	CGGCCG	1 cut(s)	109
Ecl136II	GAGCTC	1 cut(s)	48
EclXI	CGGCCG	1 cut(s)	109
Eco130I	CCWWGG	1 cut(s)	278
Eco24I	GRGCYC	2 cut(s)	50, 236
Eco52I	CGGCCG	1 cut(s)	109
Eco53kI	GAGCTC	1 cut(s)	48
Eco81I	CCTNAGG	1 cut(s)	57
EcoICRI	GAGCTC	1 cut(s)	48
EcoT14I	CCWWGG	1 cut(s)	278
EcoT38I	GRGCYC	2 cut(s)	50, 236
ErhI	CCWWGG	1 cut(s)	278
FaeI	CATG	2 cut(s)	282, 295
FaiI	YATR	5 cut(s)	240, 242, 280, 293, 297
FatI	CATG	2 cut(s)	278, 291
FblI	GTMKAC	1 cut(s)	135
Fnu4HI	GCNGC	2 cut(s)	112, 223
FokI	GGATG	1 cut(s)	164
FriOI	GRGCYC	2 cut(s)	50, 236
Fsp4HI	GCNGC	2 cut(s)	112, 223
FspBI	CTAG	1 cut(s)	213
GlaI	GCGC	2 cut(s)	115, 221
GluI	GCNGC	2 cut(s)	112, 223
GsuI	CTGGAG	1 cut(s)	34
HaeIII	GGCC	2 cut(s)	111, 142
HgaI	GACGC	1 cut(s)	236
HhaI	GCGC	2 cut(s)	116, 222
Hin1II	CATG	2 cut(s)	282, 295
Hin6I	GCGC	2 cut(s)	114, 220
HinP1I	GCGC	2 cut(s)	114, 220
HincII	GTYRAC	2 cut(s)	136, 285
HindII	GTYRAC	2 cut(s)	136, 285
HinfI	GANTC	2 cut(s)	195, 254
Hpy166II	GTNNAC	3 cut(s)	136, 275, 285
Hpy188III	TCNNGA	3 cut(s)	51, 88, 199
Hpy8I	GTNNAC	3 cut(s)	136, 275, 285
Hpy99I	CGWCG	2 cut(s)	137, 230
HpyAV	CCTTC	2 cut(s)	94, 193
HpyCH4V	TGCA	1 cut(s)	275
HpyF10VI	GCNNNNNNNGC	4 cut(s)	45, 117, 222, 231
HpyF3I	CTNAG	1 cut(s)	57
Hsp92II	CATG	2 cut(s)	282, 295
HspAI	GCGC	2 cut(s)	114, 220
Kzo9I	GATC	1 cut(s)	201
LmnI	GCTCC	1 cut(s)	53
LpnPI	CCDG	5 cut(s)	44, 64, 102, 124, 279
MaeI	CTAG	1 cut(s)	213
MalI	GATC	1 cut(s)	203
MboI	GATC	1 cut(s)	201
MboII	GAAGA	2 cut(s)	59, 94
MhlI	GDGCHC	3 cut(s)	50, 236, 277
MlyI	GAGTC	2 cut(s)	204, 263
MnlI	CCTC	5 cut(s)	66, 86, 104, 107, 182
MvnI	CGCG	3 cut(s)	114, 222, 230
MwoI	GCNNNNNNNGC	4 cut(s)	45, 117, 222, 231
NcoI	CCATGG	1 cut(s)	278
NdeII	GATC	1 cut(s)	201
NlaIII	CATG	2 cut(s)	282, 295
PcsI	WCGNNNNNNNCGW	2 cut(s)	129, 171
PflFI	GACNNNGTC	1 cut(s)	194
PkrI	GCNGC	2 cut(s)	113, 224
PleI	GAGTC	2 cut(s)	203, 262
PpsI	GAGTC	2 cut(s)	203, 262
Psp124BI	GAGCTC	1 cut(s)	50
PspPI	GGNCC	1 cut(s)	141
PsyI	GACNNNGTC	1 cut(s)	194
RsaI	GTAC	1 cut(s)	251
RsaNI	GTAC	1 cut(s)	250
SacI	GAGCTC	1 cut(s)	50
SalI	GTCGAC	1 cut(s)	134
SatI	GCNGC	2 cut(s)	112, 223
Sau3AI	GATC	1 cut(s)	201
Sau96I	GGNCC	1 cut(s)	141
SchI	GAGTC	2 cut(s)	204, 263
SduI	GDGCHC	3 cut(s)	50, 236, 277
SetI	ASST	7 cut(s)	8, 50, 58, 78, 96, 174, 218
SfcI	CTRYAG	1 cut(s)	305
SsiI	CCGC	3 cut(s)	112, 147, 222
SspMI	CTAG	1 cut(s)	213
SstI	GAGCTC	1 cut(s)	50
StyI	CCWWGG	1 cut(s)	278
TaqI	TCGA	3 cut(s)	87, 135, 174
TaqII	GACCGA	1 cut(s)	207
TauI	GCSGC	2 cut(s)	114, 225
TspDTI	ATGAA	1 cut(s)	280
Tth111I	GACNNNGTC	1 cut(s)	194
VneI	GTGCAC	1 cut(s)	273
XcmI	CCANNNNNNNNNTGG	1 cut(s)	113
XmiI	GTMKAC	1 cut(s)	135
XspI	CTAG	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.