Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0006381

Physical Location & Seq

Genomic Coordinates Forward (+)

4256634 .. 4257707

Gene Structure 1074 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g08061.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGGAAGAAGAAAGAAGACTCAGTCCATTTCCACCTCACCAGAAGTGAAGAGCTGCTTGGATTCCAATTCCAATTCCAATTCCATTTCAAATTCCAATTCCGATTCCGGCGAAGCCAAATCGAAGACCTCCATCGAGCAACTGGAGTCTCAGATCCACGAGCTTCAGATCTCCCAGTCTCATCTCCACAACCTCATCGCTCTCGAGACTCTACCGGTTTTCCACGGCCGCGCCGGCAACGACAACGCCGTCGACTGGCTCACCGCCACCGAGCGCCACTTCGCCTACCTCGGCATCCCCGCCGCCGACCGAGTCAAGATCGCCGCCACTCGCCTGCGCGGCGACGCGAGCCCCTGGATGTGCTGGTACGAGTCGCGGTACCCGGCGACGGCGCCGTGGTCGAGTTTCCGGTACGAGTTTCTGAGGTTTTTCCGGCCGGAGTCGCTCATCGCCGCCGTGTGCAATCTGGAGCAGAAGAGGTCGGTGAAGGAGTATGAGGTGGAGTTTCTGAGGGTGGCTGCCGGAGCTGGGGATCCGTCGCCGGAGTGGAGCGATGAGGAGTTGATGAGGCATTTTGTTGGTGGACTGAAGGAGGAGATACGGCGGAAGGTGGAGTCGTTTCGGCCCAAAACCCTAGGTGACGCCATGGATTTTGCTCGCAATGTGGAAGCTGGAAATGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVP_2 RVT_1 Retrotrans_gag rve

Protein Analysis

228

Amino Acids

25.54

Weight (kDa)

6.33

Isoelectric Point (pI)

57.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ty3_capsid	PF19259	101 - 221	1.9e-08	Ty3 transposon capsid-like protein
Retrotrans_gag	PF03732	106 - 198	1.2e-10	Retrotransposon gag protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006381)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06201 FvH4_1g08061 FvH4_1g08061 FvH4_5g27691 FvH4_6g16962 FvH4_7g30611
rosa_chinensis	RchiOBHm_Chr2g0094121 RchiOBHm_Chr6g0296601
rosa_laevigata	RLG00000008247 RLG00000016457
rosa_roxburghii	Rroxscaffold_2G00076380 Rroxscaffold_2G00132740 Rroxscaffold_2G00147460 Rroxscaffold_3G00257090 Rroxscaffold_7G00171340
rosa_rugosa	Rorug03G0253300 Rorug03G0304200
rosa_samantha	Rh1DG093900 Rh2AG088700 Rh2AG365300 Rh2BG088800 Rh2BG325600 Rh2CG091200 Rh2DG087800 Rh4AG227300 Rh4CG009100
rosa_wichuraiana	Rw4G001570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	248
Acc65I	GGTACC	1 cut(s)	378
AccB1I	GGYRCC	2 cut(s)	378, 391
AccI	GTMKAC	1 cut(s)	252
AccII	CGCG	4 cut(s)	231, 339, 347, 376
AciI	CCGC	9 cut(s)	229, 264, 300, 303, 324, 339, 376, 453, 604
AclWI	GGATC	3 cut(s)	148, 527, 540
AcoI	YGGCCR	2 cut(s)	226, 434
AcsI	RAATTY	1 cut(s)	91
AcuI	CTGAAG	2 cut(s)	149, 608
AcyI	GRCGYC	2 cut(s)	392, 642
AfaI	GTAC	3 cut(s)	368, 380, 413
AfiI	CCNNNNNNNGG	3 cut(s)	255, 388, 528
AgeI	ACCGGT	1 cut(s)	214
AgsI	TTSAA	1 cut(s)	90
AjnI	CCWGG	1 cut(s)	353
AjuI	GAANNNNNNNTTGG	2 cut(s)	41, 73
AluBI	AGCT	4 cut(s)	54, 163, 527, 671
AluI	AGCT	4 cut(s)	54, 163, 527, 671
Alw26I	GTCTC	3 cut(s)	153, 183, 200
AlwI	GGATC	3 cut(s)	148, 527, 540
Ama87I	CYCGRG	1 cut(s)	203
AoxI	GGCC	3 cut(s)	226, 434, 623
ApeKI	GCWGC	2 cut(s)	54, 518
ApoI	RAATTY	1 cut(s)	91
AsiGI	ACCGGT	1 cut(s)	214
Asp718I	GGTACC	1 cut(s)	378
AspA2I	CCTAGG	1 cut(s)	634
AspLEI	GCGC	4 cut(s)	233, 276, 339, 394
AspS9I	GGNCC	1 cut(s)	624
AsuC2I	CCSGG	1 cut(s)	383
AsuHPI	GGTGA	4 cut(s)	30, 253, 496, 650
AvaI	CYCGRG	1 cut(s)	203
AvrII	CCTAGG	1 cut(s)	634
BamHI	GGATCC	1 cut(s)	532
BanI	GGYRCC	2 cut(s)	378, 391
BanII	GRGCYC	1 cut(s)	353
BauI	CACGAG	1 cut(s)	158
BbsI	GAAGAC	2 cut(s)	23, 131
BbvI	GCAGC	2 cut(s)	41, 505
BccI	CCATC	1 cut(s)	140
BceAI	ACGGC	6 cut(s)	233, 241, 379, 405, 440, 617
BciT130I	CCWGG	1 cut(s)	355
BcnI	CCSGG	1 cut(s)	383
BcoDI	GTCTC	3 cut(s)	153, 183, 200
BfaI	CTAG	1 cut(s)	635
BfoI	RGCGCY	2 cut(s)	277, 395
BglI	GCCNNNNNGGC	2 cut(s)	234, 339
BglII	AGATCT	1 cut(s)	168
BisI	GCNGC	7 cut(s)	55, 229, 303, 324, 340, 453, 519
BlnI	CCTAGG	1 cut(s)	634
BlsI	GCNGC	7 cut(s)	56, 230, 304, 325, 341, 454, 520
Bme1390I	CCNGG	2 cut(s)	355, 383
BmeT110I	CYCGRG	1 cut(s)	203
BmgT120I	GGNCC	1 cut(s)	624
BmiI	GGNNCC	3 cut(s)	380, 393, 534
BmrFI	CCNGG	2 cut(s)	355, 383
BmrI	ACTGGG	1 cut(s)	169
BmsI	GCATC	1 cut(s)	303
BmuI	ACTGGG	1 cut(s)	169
BpiI	GAAGAC	2 cut(s)	23, 131
BpmI	CTGGAG	2 cut(s)	164, 488
BpuMI	CCSGG	1 cut(s)	383
BsaHI	GRCGYC	2 cut(s)	392, 642
BsaJI	CCNNGG	6 cut(s)	223, 289, 353, 395, 634, 645
BsaWI	WCCGGW	2 cut(s)	214, 408
Bsc4I	CCNNNNNNNGG	3 cut(s)	255, 388, 528
Bse118I	RCCGGY	2 cut(s)	214, 233
Bse1I	ACTGG	3 cut(s)	147, 175, 260
Bse3DI	GCAATG	1 cut(s)	667
BseBI	CCWGG	1 cut(s)	355
BseDI	CCNNGG	6 cut(s)	223, 289, 353, 395, 634, 645
BseGI	GGATG	2 cut(s)	294, 363
BseLI	CCNNNNNNNGG	3 cut(s)	255, 388, 528
BseMI	GCAATG	1 cut(s)	667
BseMII	CTCAG	4 cut(s)	35, 164, 413, 500
BseNI	ACTGG	3 cut(s)	147, 175, 260
BseRI	GAGGAG	2 cut(s)	572, 608
BseX3I	CGGCCG	2 cut(s)	226, 434
BseXI	GCAGC	2 cut(s)	41, 505
BseYI	CCCAGC	1 cut(s)	527
Bsh1236I	CGCG	4 cut(s)	231, 339, 347, 376
Bsh1285I	CGRYCG	3 cut(s)	229, 310, 437
BshFI	GGCC	3 cut(s)	228, 436, 625
BshNI	GGYRCC	2 cut(s)	378, 391
BshTI	ACCGGT	1 cut(s)	214
BsiEI	CGRYCG	3 cut(s)	229, 310, 437
BsiHKCI	CYCGRG	1 cut(s)	203
BsiSI	CCGG	9 cut(s)	108, 215, 234, 383, 409, 433, 437, 522, 542
BslI	CCNNNNNNNGG	3 cut(s)	255, 388, 528
BsmAI	GTCTC	3 cut(s)	153, 183, 200
BsnI	GGCC	3 cut(s)	228, 436, 625
BsoBI	CYCGRG	1 cut(s)	203
Bsp1286I	GDGCHC	1 cut(s)	353
Bsp143I	GATC	4 cut(s)	153, 168, 318, 532
Bsp19I	CCATGG	1 cut(s)	645
BspACI	CCGC	9 cut(s)	229, 264, 300, 303, 324, 339, 376, 453, 604
BspANI	GGCC	3 cut(s)	228, 436, 625
BspCNI	CTCAG	4 cut(s)	34, 163, 414, 501
BspFNI	CGCG	4 cut(s)	231, 339, 347, 376
BspLI	GGNNCC	3 cut(s)	380, 393, 534
BspPI	GGATC	3 cut(s)	148, 527, 540
BspQI	GCTCTTC	1 cut(s)	44
BspT107I	GGYRCC	2 cut(s)	378, 391
BsrDI	GCAATG	1 cut(s)	667
BsrFI	RCCGGY	2 cut(s)	214, 233
BsrI	ACTGG	3 cut(s)	147, 175, 260
BssAI	RCCGGY	2 cut(s)	214, 233
BssECI	CCNNGG	6 cut(s)	223, 289, 353, 395, 634, 645
BssMI	GATC	4 cut(s)	153, 168, 318, 532
BssNI	GRCGYC	2 cut(s)	392, 642
BssSI	CACGAG	1 cut(s)	158
BssT1I	CCWWGG	2 cut(s)	634, 645
Bst2BI	CACGAG	1 cut(s)	158
Bst2UI	CCWGG	1 cut(s)	355
Bst6I	CTCTTC	2 cut(s)	44, 470
BstACI	GRCGYC	2 cut(s)	392, 642
BstC8I	GCNNGC	4 cut(s)	235, 335, 349, 658
BstDEI	CTNAG	4 cut(s)	21, 150, 422, 509
BstDSI	CCRYGG	3 cut(s)	223, 395, 645
BstF5I	GGATG	2 cut(s)	294, 363
BstFNI	CGCG	4 cut(s)	231, 339, 347, 376
BstH2I	RGCGCY	2 cut(s)	277, 395
BstHHI	GCGC	4 cut(s)	233, 276, 339, 394
BstKTI	GATC	4 cut(s)	156, 171, 321, 535
BstMAI	GTCTC	3 cut(s)	153, 183, 200
BstMBI	GATC	4 cut(s)	153, 168, 318, 532
BstMCI	CGRYCG	3 cut(s)	229, 310, 437
BstMWI	GCNNNNNNNGC	6 cut(s)	234, 339, 348, 442, 524, 677
BstNI	CCWGG	1 cut(s)	355
BstSCI	CCNGG	2 cut(s)	353, 381
BstUI	CGCG	4 cut(s)	231, 339, 347, 376
BstV1I	GCAGC	2 cut(s)	41, 505
BstV2I	GAAGAC	2 cut(s)	23, 131
BstX2I	RGATCY	3 cut(s)	153, 168, 532
BstYI	RGATCY	3 cut(s)	153, 168, 532
BstZI	CGGCCG	2 cut(s)	226, 434
BsuRI	GGCC	3 cut(s)	228, 436, 625
BtgI	CCRYGG	3 cut(s)	223, 395, 645
BtgZI	GCGATG	3 cut(s)	181, 433, 567
BtsCI	GGATG	2 cut(s)	294, 363
Cac8I	GCNNGC	4 cut(s)	235, 335, 349, 658
CfoI	GCGC	4 cut(s)	233, 276, 339, 394
Cfr10I	RCCGGY	2 cut(s)	214, 233
Cfr13I	GGNCC	1 cut(s)	624
CseI	GACGC	2 cut(s)	353, 650
Csp6I	GTAC	3 cut(s)	367, 379, 412
CspAI	ACCGGT	1 cut(s)	214
CviAII	CATG	1 cut(s)	646
CviQI	GTAC	3 cut(s)	367, 379, 412
DdeI	CTNAG	4 cut(s)	21, 150, 422, 509
DinI	GGCGCC	1 cut(s)	393
DpnI	GATC	4 cut(s)	155, 170, 320, 534
DpnII	GATC	4 cut(s)	153, 168, 318, 532
DrdI	GACNNNNNNGTC	1 cut(s)	248
DseDI	GACNNNNNNGTC	1 cut(s)	248
EaeI	YGGCCR	2 cut(s)	226, 434
EagI	CGGCCG	2 cut(s)	226, 434
Eam1104I	CTCTTC	2 cut(s)	44, 470
EarI	CTCTTC	2 cut(s)	44, 470
EciI	GGCGGA	1 cut(s)	619
EclXI	CGGCCG	2 cut(s)	226, 434
Eco130I	CCWWGG	2 cut(s)	634, 645
Eco24I	GRGCYC	1 cut(s)	353
Eco52I	CGGCCG	2 cut(s)	226, 434
Eco57I	CTGAAG	2 cut(s)	149, 608
Eco88I	CYCGRG	1 cut(s)	203
EcoRII	CCWGG	1 cut(s)	353
EcoT14I	CCWWGG	2 cut(s)	634, 645
EcoT22I	ATGCAT	1 cut(s)	682
EcoT38I	GRGCYC	1 cut(s)	353
EgeI	GGCGCC	1 cut(s)	393
EheI	GGCGCC	1 cut(s)	393
ErhI	CCWWGG	2 cut(s)	634, 645
FaeI	CATG	1 cut(s)	649
FaiI	YATR	3 cut(s)	495, 647, 682
FalI	AAGNNNNNCTT	2 cut(s)	41, 73
FatI	CATG	1 cut(s)	645
FauI	CCCGC	1 cut(s)	307
FblI	GTMKAC	1 cut(s)	252
Fnu4HI	GCNGC	7 cut(s)	55, 229, 303, 324, 340, 453, 519
FokI	GGATG	2 cut(s)	281, 370
FriOI	GRGCYC	1 cut(s)	353
Fsp4HI	GCNGC	7 cut(s)	55, 229, 303, 324, 340, 453, 519
FspBI	CTAG	1 cut(s)	635
GlaI	GCGC	4 cut(s)	232, 275, 338, 393
GluI	GCNGC	7 cut(s)	55, 229, 303, 324, 340, 453, 519
GsaI	CCCAGC	1 cut(s)	531
GsuI	CTGGAG	2 cut(s)	164, 488
HaeII	RGCGCY	2 cut(s)	277, 395
HaeIII	GGCC	3 cut(s)	228, 436, 625
HapII	CCGG	9 cut(s)	108, 215, 234, 383, 409, 433, 437, 522, 542
HgaI	GACGC	2 cut(s)	353, 650
HhaI	GCGC	4 cut(s)	233, 276, 339, 394
Hin1I	GRCGYC	2 cut(s)	392, 642
Hin1II	CATG	1 cut(s)	649
Hin6I	GCGC	4 cut(s)	231, 274, 337, 392
HinP1I	GCGC	4 cut(s)	231, 274, 337, 392
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HinfI	GANTC	9 cut(s)	19, 62, 104, 146, 208, 312, 371, 440, 614
HpaII	CCGG	9 cut(s)	108, 215, 234, 383, 409, 433, 437, 522, 542
HphI	GGTGA	4 cut(s)	30, 253, 496, 650
Hpy166II	GTNNAC	2 cut(s)	253, 584
Hpy188I	TCNGA	5 cut(s)	103, 153, 168, 423, 510
Hpy188III	TCNNGA	4 cut(s)	203, 205, 316, 467
Hpy8I	GTNNAC	2 cut(s)	253, 584
Hpy99I	CGWCG	4 cut(s)	254, 347, 391, 541
HpyAV	CCTTC	3 cut(s)	481, 583, 601
HpyCH4V	TGCA	2 cut(s)	462, 680
HpyF10VI	GCNNNNNNNGC	6 cut(s)	234, 339, 348, 442, 524, 677
HpyF3I	CTNAG	4 cut(s)	21, 150, 422, 509
Hsp92I	GRCGYC	2 cut(s)	392, 642
Hsp92II	CATG	1 cut(s)	649
HspAI	GCGC	4 cut(s)	231, 274, 337, 392
KasI	GGCGCC	1 cut(s)	391
KpnI	GGTACC	1 cut(s)	382
KroI	GCCGGC	1 cut(s)	233
KroNI	GCCGGC	1 cut(s)	235
Kzo9I	GATC	4 cut(s)	153, 168, 318, 532
LguI	GCTCTTC	1 cut(s)	44
LmnI	GCTCC	3 cut(s)	469, 524, 549
Lsp1109I	GCAGC	2 cut(s)	41, 505
LweI	GCATC	1 cut(s)	303
MaeI	CTAG	1 cut(s)	635
MaeIII	GTNAC	1 cut(s)	638
MalI	GATC	4 cut(s)	155, 170, 320, 534
MboI	GATC	4 cut(s)	153, 168, 318, 532
MboII	GAAGA	6 cut(s)	18, 21, 28, 61, 136, 487
MflI	RGATCY	3 cut(s)	153, 168, 532
MhlI	GDGCHC	1 cut(s)	353
MluCI	AATT	5 cut(s)	67, 73, 79, 91, 97
Mly113I	GGCGCC	1 cut(s)	392
MlyI	GAGTC	7 cut(s)	13, 155, 202, 321, 380, 449, 623
Mph1103I	ATGCAT	1 cut(s)	682
MroNI	GCCGGC	1 cut(s)	233
MspI	CCGG	9 cut(s)	108, 215, 234, 383, 409, 433, 437, 522, 542
MspR9I	CCNGG	2 cut(s)	355, 383
MvaI	CCWGG	1 cut(s)	355
MvnI	CGCG	4 cut(s)	231, 339, 347, 376
MwoI	GCNNNNNNNGC	6 cut(s)	234, 339, 348, 442, 524, 677
NaeI	GCCGGC	1 cut(s)	235
NarI	GGCGCC	1 cut(s)	392
NciI	CCSGG	1 cut(s)	383
NcoI	CCATGG	1 cut(s)	645
NdeII	GATC	4 cut(s)	153, 168, 318, 532
NgoMIV	GCCGGC	1 cut(s)	233
NlaIII	CATG	1 cut(s)	649
NlaIV	GGNNCC	3 cut(s)	380, 393, 534
NmeAIII	GCCGAG	1 cut(s)	270
NmuCI	GTSAC	1 cut(s)	638
NsiI	ATGCAT	1 cut(s)	682
PaeR7I	CTCGAG	1 cut(s)	203
PciSI	GCTCTTC	1 cut(s)	44
PcsI	WCGNNNNNNNCGW	1 cut(s)	246
PdiI	GCCGGC	1 cut(s)	235
PfeI	GAWTC	2 cut(s)	62, 104
PflFI	GACNNNGTC	2 cut(s)	22, 311
PinAI	ACCGGT	1 cut(s)	214
PkrI	GCNGC	7 cut(s)	56, 230, 304, 325, 341, 454, 520
PleI	GAGTC	7 cut(s)	13, 154, 202, 320, 379, 448, 622
PluTI	GGCGCC	1 cut(s)	395
PpsI	GAGTC	7 cut(s)	13, 154, 202, 320, 379, 448, 622
Psp6I	CCWGG	1 cut(s)	353
PspFI	CCCAGC	1 cut(s)	527
PspGI	CCWGG	1 cut(s)	353
PspN4I	GGNNCC	3 cut(s)	380, 393, 534
PspPI	GGNCC	1 cut(s)	624
PsuI	RGATCY	3 cut(s)	153, 168, 532
PsyI	GACNNNGTC	2 cut(s)	22, 311
RsaI	GTAC	3 cut(s)	368, 380, 413
RsaNI	GTAC	3 cut(s)	367, 379, 412
SalI	GTCGAC	1 cut(s)	251
SapI	GCTCTTC	1 cut(s)	44
SatI	GCNGC	7 cut(s)	55, 229, 303, 324, 340, 453, 519
Sau3AI	GATC	4 cut(s)	153, 168, 318, 532
Sau96I	GGNCC	1 cut(s)	624
SchI	GAGTC	7 cut(s)	13, 155, 202, 321, 380, 449, 623
ScrFI	CCNGG	2 cut(s)	355, 383
SduI	GDGCHC	1 cut(s)	353
SfaNI	GCATC	1 cut(s)	303
SfoI	GGCGCC	1 cut(s)	393
Sfr274I	CTCGAG	1 cut(s)	203
SlaI	CTCGAG	1 cut(s)	203
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
Sse9I	AATT	5 cut(s)	67, 73, 79, 91, 97
SsiI	CCGC	9 cut(s)	229, 264, 300, 303, 324, 339, 376, 453, 604
SspDI	GGCGCC	1 cut(s)	391
SspMI	CTAG	1 cut(s)	635
StyD4I	CCNGG	2 cut(s)	353, 381
StyI	CCWWGG	2 cut(s)	634, 645
TaqI	TCGA	5 cut(s)	122, 135, 204, 252, 401
TaqII	GACCGA	1 cut(s)	324
TasI	AATT	5 cut(s)	67, 73, 79, 91, 97
TauI	GCSGC	5 cut(s)	231, 305, 326, 342, 455
TfiI	GAWTC	2 cut(s)	62, 104
TseFI	GTSAC	1 cut(s)	638
TseI	GCWGC	2 cut(s)	54, 518
Tsp45I	GTSAC	1 cut(s)	638
TspGWI	ACGGA	1 cut(s)	525
Tth111I	GACNNNGTC	2 cut(s)	22, 311
XapI	RAATTY	1 cut(s)	91
XcmI	CCANNNNNNNNNTGG	1 cut(s)	139
XhoI	CTCGAG	1 cut(s)	203
XmaJI	CCTAGG	1 cut(s)	634
XmiI	GTMKAC	1 cut(s)	252
XspI	CTAG	1 cut(s)	635
Zsp2I	ATGCAT	1 cut(s)	682

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.