Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0006381

Physical Location & Seq

Genomic Coordinates Forward (+)

22254555 .. 22255475

Gene Structure 921 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g30611.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGGGCTACCTGGACTACAACGGCTCACTGGGCCGGCTCAAGCAGAAGGGGTCCCTGGCGGAGTATGAAGCTGAGTTTCTGAGACTCTCCTGCAAGGTAACACCTGCTTGCTGGACTGAAGAGGATTTGATCGAGCGGTTTTTGGATGGGCTGAAGGAGCAACGAGTTCGTGAACGCGTGGAGTCGCTTGGGCCGGACTCGCTCTACGATGCTATGCAGAAGGCCCGGCTTGTGAAAACCGGTGGGCCTTTGTTGTTTATTCAGCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

90

Amino Acids

10.14

Weight (kDa)

5.45

Isoelectric Point (pI)

40.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Retrotrans_gag	PF03732	10 - 53	9.5e-07	Retrotransposon gag protein
Ty3_capsid	PF19259	10 - 75	7e-06	Ty3 transposon capsid-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006381)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06201 FvH4_1g08061 FvH4_1g08061 FvH4_5g27691 FvH4_6g16962 FvH4_7g30611
rosa_chinensis	RchiOBHm_Chr2g0094121 RchiOBHm_Chr6g0296601
rosa_laevigata	RLG00000008247 RLG00000016457
rosa_roxburghii	Rroxscaffold_2G00076380 Rroxscaffold_2G00132740 Rroxscaffold_2G00147460 Rroxscaffold_3G00257090 Rroxscaffold_7G00171340
rosa_rugosa	Rorug03G0253300 Rorug03G0304200
rosa_samantha	Rh1DG093900 Rh2AG088700 Rh2AG365300 Rh2BG088800 Rh2BG325600 Rh2CG091200 Rh2DG087800 Rh4AG227300 Rh4CG009100
rosa_wichuraiana	Rw4G001570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	112
Acc36I	ACCTGC	1 cut(s)	112
AccBSI	CCGCTC	1 cut(s)	136
AccII	CGCG	1 cut(s)	177
AciI	CCGC	2 cut(s)	59, 136
AcuI	CTGAAG	2 cut(s)	138, 173
AflIII	ACRYGT	1 cut(s)	175
AgeI	ACCGGT	1 cut(s)	239
AjnI	CCWGG	2 cut(s)	9, 54
AluBI	AGCT	1 cut(s)	71
AluI	AGCT	1 cut(s)	71
Alw26I	GTCTC	1 cut(s)	76
AoxI	GGCC	4 cut(s)	31, 191, 222, 245
AsiGI	ACCGGT	1 cut(s)	239
AspS9I	GGNCC	5 cut(s)	31, 51, 191, 223, 245
AsuC2I	CCSGG	1 cut(s)	226
AvaII	GGWCC	1 cut(s)	51
BccI	CCATC	1 cut(s)	140
BceAI	ACGGC	1 cut(s)	37
BcgI	CGANNNNNNTGC	2 cut(s)	149, 183
BciT130I	CCWGG	2 cut(s)	11, 56
BcnI	CCSGG	1 cut(s)	226
BcoDI	GTCTC	1 cut(s)	76
BfaI	CTAG	1 cut(s)	268
BfuAI	ACCTGC	1 cut(s)	112
Bme1390I	CCNGG	3 cut(s)	11, 56, 226
Bme18I	GGWCC	1 cut(s)	51
BmgT120I	GGNCC	5 cut(s)	31, 51, 191, 223, 245
BmiI	GGNNCC	2 cut(s)	52, 53
BmrFI	CCNGG	3 cut(s)	11, 56, 226
BmrI	ACTGGG	1 cut(s)	38
BmsI	GCATC	1 cut(s)	199
BmuI	ACTGGG	1 cut(s)	38
BpuEI	CTTGAG	1 cut(s)	23
BpuMI	CCSGG	1 cut(s)	226
BsaJI	CCNNGG	1 cut(s)	54
BsaWI	WCCGGW	1 cut(s)	239
Bse118I	RCCGGY	2 cut(s)	33, 239
Bse1I	ACTGG	1 cut(s)	33
BseBI	CCWGG	2 cut(s)	11, 56
BseDI	CCNNGG	1 cut(s)	54
BseGI	GGATG	1 cut(s)	151
BseMII	CTCAG	2 cut(s)	63, 71
BseNI	ACTGG	1 cut(s)	33
Bsh1236I	CGCG	1 cut(s)	177
BshFI	GGCC	4 cut(s)	33, 193, 224, 247
BshTI	ACCGGT	1 cut(s)	239
BsiSI	CCGG	4 cut(s)	34, 194, 226, 240
BslFI	GGGAC	1 cut(s)	37
BsmAI	GTCTC	1 cut(s)	76
BsmFI	GGGAC	1 cut(s)	37
BsnI	GGCC	4 cut(s)	33, 193, 224, 247
Bsp143I	GATC	1 cut(s)	129
BspACI	CCGC	2 cut(s)	59, 136
BspANI	GGCC	4 cut(s)	33, 193, 224, 247
BspCNI	CTCAG	2 cut(s)	64, 72
BspFNI	CGCG	1 cut(s)	177
BspLI	GGNNCC	2 cut(s)	52, 53
BspMI	ACCTGC	1 cut(s)	112
BsrBI	CCGCTC	1 cut(s)	136
BsrFI	RCCGGY	2 cut(s)	33, 239
BsrI	ACTGG	1 cut(s)	33
BssAI	RCCGGY	2 cut(s)	33, 239
BssECI	CCNNGG	1 cut(s)	54
BssMI	GATC	1 cut(s)	129
Bst2UI	CCWGG	2 cut(s)	11, 56
Bst6I	CTCTTC	1 cut(s)	114
BstC8I	GCNNGC	2 cut(s)	35, 109
BstDEI	CTNAG	2 cut(s)	72, 80
BstF5I	GGATG	1 cut(s)	151
BstFNI	CGCG	1 cut(s)	177
BstKTI	GATC	1 cut(s)	132
BstMAI	GTCTC	1 cut(s)	76
BstMBI	GATC	1 cut(s)	129
BstMWI	GCNNNNNNNGC	3 cut(s)	30, 157, 199
BstNI	CCWGG	2 cut(s)	11, 56
BstSCI	CCNGG	3 cut(s)	9, 54, 224
BstUI	CGCG	1 cut(s)	177
BsuRI	GGCC	4 cut(s)	33, 193, 224, 247
BtsCI	GGATG	1 cut(s)	151
BtsIMutI	CAGTG	1 cut(s)	26
BveI	ACCTGC	1 cut(s)	112
Cac8I	GCNNGC	2 cut(s)	35, 109
Cfr10I	RCCGGY	2 cut(s)	33, 239
Cfr13I	GGNCC	5 cut(s)	31, 51, 191, 223, 245
CspAI	ACCGGT	1 cut(s)	239
DdeI	CTNAG	2 cut(s)	72, 80
DpnI	GATC	1 cut(s)	131
DpnII	GATC	1 cut(s)	129
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
EciI	GGCGGA	1 cut(s)	74
Eco47I	GGWCC	1 cut(s)	51
Eco57I	CTGAAG	2 cut(s)	138, 173
EcoO109I	RGGNCCY	1 cut(s)	51
EcoRII	CCWGG	2 cut(s)	9, 54
FaiI	YATR	2 cut(s)	66, 215
FaqI	GGGAC	1 cut(s)	37
FokI	GGATG	1 cut(s)	158
FspBI	CTAG	1 cut(s)	268
HaeIII	GGCC	4 cut(s)	33, 193, 224, 247
HapII	CCGG	4 cut(s)	34, 194, 226, 240
HinfI	GANTC	3 cut(s)	84, 182, 197
HpaII	CCGG	4 cut(s)	34, 194, 226, 240
Hpy166II	GTNNAC	1 cut(s)	173
Hpy188I	TCNGA	1 cut(s)	81
Hpy188III	TCNNGA	1 cut(s)	170
Hpy8I	GTNNAC	1 cut(s)	173
HpyAV	CCTTC	3 cut(s)	40, 148, 214
HpyCH4V	TGCA	2 cut(s)	93, 217
HpyF10VI	GCNNNNNNNGC	3 cut(s)	30, 157, 199
HpyF3I	CTNAG	2 cut(s)	72, 80
KflI	GGGWCCC	1 cut(s)	51
KroI	GCCGGC	1 cut(s)	33
KroNI	GCCGGC	1 cut(s)	35
Kzo9I	GATC	1 cut(s)	129
LmnI	GCTCC	1 cut(s)	157
LweI	GCATC	1 cut(s)	199
MaeI	CTAG	1 cut(s)	268
MaeIII	GTNAC	1 cut(s)	97
MalI	GATC	1 cut(s)	131
MbiI	CCGCTC	1 cut(s)	136
MboI	GATC	1 cut(s)	129
MboII	GAAGA	1 cut(s)	131
MluI	ACGCGT	1 cut(s)	175
MlyI	GAGTC	3 cut(s)	78, 191, 191
MnlI	CCTC	1 cut(s)	115
MroNI	GCCGGC	1 cut(s)	33
MspI	CCGG	4 cut(s)	34, 194, 226, 240
MspR9I	CCNGG	3 cut(s)	11, 56, 226
MvaI	CCWGG	2 cut(s)	11, 56
MvnI	CGCG	1 cut(s)	177
MwoI	GCNNNNNNNGC	3 cut(s)	30, 157, 199
NaeI	GCCGGC	1 cut(s)	35
NciI	CCSGG	1 cut(s)	226
NdeII	GATC	1 cut(s)	129
NgoMIV	GCCGGC	1 cut(s)	33
NlaIV	GGNNCC	2 cut(s)	52, 53
PaqCI	CACCTGC	1 cut(s)	112
PdiI	GCCGGC	1 cut(s)	35
PinAI	ACCGGT	1 cut(s)	239
PleI	GAGTC	3 cut(s)	78, 190, 191
PpsI	GAGTC	3 cut(s)	78, 190, 191
PpuMI	RGGWCCY	1 cut(s)	51
Psp5II	RGGWCCY	1 cut(s)	51
Psp6I	CCWGG	2 cut(s)	9, 54
PspGI	CCWGG	2 cut(s)	9, 54
PspN4I	GGNNCC	2 cut(s)	52, 53
PspPI	GGNCC	5 cut(s)	31, 51, 191, 223, 245
PspPPI	RGGWCCY	1 cut(s)	51
Sau3AI	GATC	1 cut(s)	129
Sau96I	GGNCC	5 cut(s)	31, 51, 191, 223, 245
SchI	GAGTC	3 cut(s)	78, 191, 191
ScrFI	CCNGG	3 cut(s)	11, 56, 226
SetI	ASST	4 cut(s)	12, 73, 99, 106
SfaNI	GCATC	1 cut(s)	199
SinI	GGWCC	1 cut(s)	51
SmlI	CTYRAG	1 cut(s)	38
SmoI	CTYRAG	1 cut(s)	38
SsiI	CCGC	2 cut(s)	59, 136
SspMI	CTAG	1 cut(s)	268
StyD4I	CCNGG	3 cut(s)	9, 54, 224
TaqI	TCGA	1 cut(s)	132
TscAI	CASTG	1 cut(s)	33
TspDTI	ATGAA	1 cut(s)	81
TspRI	CASTG	1 cut(s)	33
VpaK11BI	GGWCC	1 cut(s)	51
XspI	CTAG	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.