Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0006381

Physical Location & Seq

Genomic Coordinates Forward (+)

10828000 .. 10829163

Gene Structure 1164 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g16962.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGCTCCGGCAAGAACCTTGCAAACCACAATTCTGTCCACCATTTCGCCTTCTAATGCTCAGGTCCCAAATATTATATCTCATCAACATTTTCCACCACTTTCACCAACATCTTCTCGTTTTGACGAGACGAATAGATTACAAGTAGAGGAGATTCGTCATTTTTTGCAAAATGAACTTCATCATTCAATTGAGGCTATCCATCGCAACCGAGCATCCTTCCAAAGTGAGATTGCATCACAGATTGCAGTGTTGCAGAACACAATGATGCAAGCCTTAACGTTGCGTCCAATTTCTCATAACACCCATCATGCAGTTACTCAACCAGAAACCGTTTATAACCACCAGTGCCAACATGCCAATTCCAATTTCTTTACAGCATCGCCACAATCGTCCATCATTACTTCCATTCCTTCCAACTCTCACATTCGTACCATGTCCATGAACATGCCTTTGTTTCGACCTCCAAAAGTGGATTTACCATGGTTCCATGGTGACGACGCATTGGGATGGCTCACAATGGCAGAGAGGTATTTGCGCTCTCAACGCATTCCTCCCTTGGAGTATATACCGACTGTAACCTCTCACTTCAGACCAGATGCTTGTATGTGGATGAATTCTTTTGAGGAAAGAAATCCTTGGGCAACTTGGGAACAATTTTCTTCTGCCATCCTCGAACACTATGGAGCGAGTAGCATCACCGATATTCAAATTGTTTTGGCATGCTTGGAGCAAACTACAACAGTAGATGCTTTCATTGTTGCTTTTACAAAACTTTCTAGTAGAGCTTATGGATGGACTAAAGCACAACTCTTGCCAAATTTCCTGGGAGGACTGAAACCTGAGATTTGTCATGATGTACAAGTCATGGAACCAAGAACTTTAGCAGAAGCACAAAGACTGGCGCGGAGATTAGAAGCAAAATTGAATGATTCTCGGCTACACAGACTTTCTCGACCATCAGGTGCTTGGTCTTCCTCCTCAAAACAAAACACTATAGGTTCTCAAAATTCCTCCATCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVP_2 RVT_1 Retrotrans_gag gag-asp_proteas rve

Protein Analysis

342

Amino Acids

38.63

Weight (kDa)

7.86

Isoelectric Point (pI)

59.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ty3_capsid	PF19259	188 - 304	2.4e-10	Ty3 transposon capsid-like protein
Retrotrans_gag	PF03732	193 - 281	4.7e-10	Retrotransposon gag protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006381)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06201 FvH4_1g08061 FvH4_1g08061 FvH4_5g27691 FvH4_6g16962 FvH4_7g30611
rosa_chinensis	RchiOBHm_Chr2g0094121 RchiOBHm_Chr6g0296601
rosa_laevigata	RLG00000008247 RLG00000016457
rosa_roxburghii	Rroxscaffold_2G00076380 Rroxscaffold_2G00132740 Rroxscaffold_2G00147460 Rroxscaffold_3G00257090 Rroxscaffold_7G00171340
rosa_rugosa	Rorug03G0253300 Rorug03G0304200
rosa_samantha	Rh1DG093900 Rh2AG088700 Rh2AG365300 Rh2BG088800 Rh2BG325600 Rh2CG091200 Rh2DG087800 Rh4AG227300 Rh4CG009100
rosa_wichuraiana	Rw4G001570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	339
AccII	CGCG	1 cut(s)	907
AciI	CCGC	1 cut(s)	907
AclI	AACGTT	1 cut(s)	281
AcsI	RAATTY	3 cut(s)	616, 820, 1009
AcuI	CTGAAG	1 cut(s)	574
AfaI	GTAC	2 cut(s)	433, 861
AgsI	TTSAA	3 cut(s)	189, 710, 928
AjnI	CCWGG	1 cut(s)	825
AjuI	GAANNNNNNNTTGG	2 cut(s)	353, 385
AluBI	AGCT	1 cut(s)	788
AluI	AGCT	1 cut(s)	788
Alw26I	GTCTC	1 cut(s)	122
ApoI	RAATTY	3 cut(s)	616, 820, 1009
AspLEI	GCGC	2 cut(s)	540, 907
AspS9I	GGNCC	1 cut(s)	64
AsuHPI	GGTGA	3 cut(s)	96, 506, 691
AvaII	GGWCC	1 cut(s)	64
BaeI	ACNNNNGTAYC	2 cut(s)	415, 448
BbsI	GAAGAC	1 cut(s)	966
BccI	CCATC	8 cut(s)	210, 315, 404, 504, 677, 789, 967, 1025
BciT130I	CCWGG	1 cut(s)	827
BcoDI	GTCTC	1 cut(s)	122
BfaI	CTAG	1 cut(s)	780
BfmI	CTRYAG	1 cut(s)	996
Bme1390I	CCNGG	1 cut(s)	827
Bme18I	GGWCC	1 cut(s)	64
BmgT120I	GGNCC	1 cut(s)	64
BmiI	GGNNCC	4 cut(s)	6, 66, 488, 873
BmrFI	CCNGG	1 cut(s)	827
BmsI	GCATC	7 cut(s)	224, 245, 258, 389, 589, 705, 739
BpiI	GAAGAC	1 cut(s)	966
Bpu10I	CCTNAGC	1 cut(s)	60
BsaJI	CCNNGG	5 cut(s)	482, 490, 558, 638, 826
Bse1I	ACTGG	2 cut(s)	346, 906
BseBI	CCWGG	1 cut(s)	827
BseDI	CCNNGG	5 cut(s)	482, 490, 558, 638, 826
BseGI	GGATG	5 cut(s)	215, 515, 618, 669, 800
BseMII	CTCAG	2 cut(s)	74, 834
BseNI	ACTGG	2 cut(s)	346, 906
BseRI	GAGGAG	2 cut(s)	164, 970
Bsh1236I	CGCG	1 cut(s)	907
BsiSI	CCGG	1 cut(s)	8
BslFI	GGGAC	1 cut(s)	50
BsmAI	GTCTC	1 cut(s)	122
BsmBI	CGTCTC	1 cut(s)	122
BsmFI	GGGAC	1 cut(s)	50
BsmI	GAATGC	1 cut(s)	549
Bsp1407I	TGTACA	1 cut(s)	859
Bsp19I	CCATGG	2 cut(s)	482, 490
BspACI	CCGC	1 cut(s)	907
BspCNI	CTCAG	2 cut(s)	73, 835
BspFNI	CGCG	1 cut(s)	907
BspHI	TCATGA	1 cut(s)	853
BspLI	GGNNCC	4 cut(s)	6, 66, 488, 873
BsrGI	TGTACA	1 cut(s)	859
BsrI	ACTGG	2 cut(s)	346, 906
BssECI	CCNNGG	5 cut(s)	482, 490, 558, 638, 826
BssT1I	CCWWGG	4 cut(s)	482, 490, 558, 638
Bst2UI	CCWGG	1 cut(s)	827
Bst4CI	ACNGT	3 cut(s)	334, 577, 745
BstAUI	TGTACA	1 cut(s)	859
BstC8I	GCNNGC	2 cut(s)	273, 724
BstDEI	CTNAG	2 cut(s)	60, 843
BstDSI	CCRYGG	2 cut(s)	482, 490
BstF5I	GGATG	5 cut(s)	215, 515, 618, 669, 800
BstFNI	CGCG	1 cut(s)	907
BstHHI	GCGC	2 cut(s)	540, 907
BstMAI	GTCTC	1 cut(s)	122
BstMWI	GCNNNNNNNGC	1 cut(s)	546
BstNI	CCWGG	1 cut(s)	827
BstNSI	RCATGY	3 cut(s)	359, 451, 726
BstSCI	CCNGG	1 cut(s)	825
BstSFI	CTRYAG	1 cut(s)	996
BstUI	CGCG	1 cut(s)	907
BstV2I	GAAGAC	1 cut(s)	966
BtgI	CCRYGG	2 cut(s)	482, 490
BtgZI	GCGATG	2 cut(s)	188, 366
BtsCI	GGATG	5 cut(s)	215, 515, 618, 669, 800
BtsI	GCAGTG	1 cut(s)	255
BtsIMutI	CAGTG	2 cut(s)	255, 353
Cac8I	GCNNGC	2 cut(s)	273, 724
CciI	TCATGA	1 cut(s)	853
CfoI	GCGC	2 cut(s)	540, 907
Cfr13I	GGNCC	1 cut(s)	64
CseI	GACGC	2 cut(s)	275, 509
Csp6I	GTAC	2 cut(s)	432, 860
CviJI	RGCY	6 cut(s)	5, 197, 275, 514, 788, 940
CviKI_1	RGCY	6 cut(s)	5, 197, 275, 514, 788, 940
CviQI	GTAC	2 cut(s)	432, 860
DdeI	CTNAG	2 cut(s)	60, 843
Eco130I	CCWWGG	4 cut(s)	482, 490, 558, 638
Eco47I	GGWCC	1 cut(s)	64
Eco57I	CTGAAG	1 cut(s)	574
EcoO109I	RGGNCCY	1 cut(s)	64
EcoRI	GAATTC	1 cut(s)	616
EcoRII	CCWGG	1 cut(s)	825
EcoT14I	CCWWGG	4 cut(s)	482, 490, 558, 638
ErhI	CCWWGG	4 cut(s)	482, 490, 558, 638
Esp3I	CGTCTC	1 cut(s)	122
FalI	AAGNNNNNCTT	2 cut(s)	622, 654
FaqI	GGGAC	1 cut(s)	50
FokI	GGATG	5 cut(s)	202, 522, 625, 656, 807
FspBI	CTAG	1 cut(s)	780
GlaI	GCGC	2 cut(s)	539, 906
HapII	CCGG	1 cut(s)	8
HgaI	GACGC	2 cut(s)	275, 509
HhaI	GCGC	2 cut(s)	540, 907
Hin6I	GCGC	2 cut(s)	538, 905
HinP1I	GCGC	2 cut(s)	538, 905
HinfI	GANTC	2 cut(s)	154, 932
HpaII	CCGG	1 cut(s)	8
HphI	GGTGA	3 cut(s)	96, 506, 691
Hpy166II	GTNNAC	1 cut(s)	39
Hpy188I	TCNGA	1 cut(s)	593
Hpy188III	TCNNGA	2 cut(s)	854, 954
Hpy8I	GTNNAC	1 cut(s)	39
Hpy99I	CGWCG	1 cut(s)	503
HpyAV	CCTTC	3 cut(s)	60, 229, 423
HpyCH4III	ACNGT	3 cut(s)	334, 577, 745
HpyCH4IV	ACGT	1 cut(s)	281
HpyCH4V	TGCA	7 cut(s)	22, 169, 236, 248, 256, 271, 314
HpyF10VI	GCNNNNNNNGC	1 cut(s)	546
HpyF3I	CTNAG	2 cut(s)	60, 843
HpySE526I	ACGT	1 cut(s)	281
HspAI	GCGC	2 cut(s)	538, 905
LmnI	GCTCC	3 cut(s)	10, 686, 730
LweI	GCATC	7 cut(s)	224, 245, 258, 389, 589, 705, 739
MaeI	CTAG	1 cut(s)	780
MaeII	ACGT	1 cut(s)	281
MaeIII	GTNAC	3 cut(s)	316, 494, 577
MboII	GAAGA	3 cut(s)	105, 654, 966
MfeI	CAATTG	1 cut(s)	189
MmeI	TCCRAC	1 cut(s)	441
MseI	TTAA	1 cut(s)	278
MslI	CAYNNNNRTG	4 cut(s)	266, 440, 446, 508
MspI	CCGG	1 cut(s)	8
MspR9I	CCNGG	1 cut(s)	827
MunI	CAATTG	1 cut(s)	189
Mva1269I	GAATGC	1 cut(s)	549
MvaI	CCWGG	1 cut(s)	827
MvnI	CGCG	1 cut(s)	907
MwoI	GCNNNNNNNGC	1 cut(s)	546
NcoI	CCATGG	2 cut(s)	482, 490
NlaIV	GGNNCC	4 cut(s)	6, 66, 488, 873
NmeAIII	GCCGAG	1 cut(s)	916
NmuCI	GTSAC	1 cut(s)	494
NspI	RCATGY	3 cut(s)	359, 451, 726
PaeI	GCATGC	1 cut(s)	726
PagI	TCATGA	1 cut(s)	853
PcsI	WCGNNNNNNNCGW	1 cut(s)	389
PctI	GAATGC	1 cut(s)	549
PfeI	GAWTC	2 cut(s)	154, 932
PpuMI	RGGWCCY	1 cut(s)	64
PsiI	TTATAA	1 cut(s)	339
Psp1406I	AACGTT	1 cut(s)	281
Psp5II	RGGWCCY	1 cut(s)	64
Psp6I	CCWGG	1 cut(s)	825
PspGI	CCWGG	1 cut(s)	825
PspN4I	GGNNCC	4 cut(s)	6, 66, 488, 873
PspPI	GGNCC	1 cut(s)	64
PspPPI	RGGWCCY	1 cut(s)	64
RsaI	GTAC	2 cut(s)	433, 861
RsaNI	GTAC	2 cut(s)	432, 860
RseI	CAYNNNNRTG	4 cut(s)	266, 440, 446, 508
SaqAI	TTAA	1 cut(s)	278
Sau96I	GGNCC	1 cut(s)	64
ScrFI	CCNGG	1 cut(s)	827
SfaNI	GCATC	7 cut(s)	224, 245, 258, 389, 589, 705, 739
SfcI	CTRYAG	1 cut(s)	996
SinI	GGWCC	1 cut(s)	64
SmiMI	CAYNNNNRTG	4 cut(s)	266, 440, 446, 508
SphI	GCATGC	1 cut(s)	726
SsiI	CCGC	1 cut(s)	907
SspI	AATATT	1 cut(s)	73
SspMI	CTAG	1 cut(s)	780
StyD4I	CCNGG	1 cut(s)	825
StyI	CCWWGG	4 cut(s)	482, 490, 558, 638
TaaI	ACNGT	3 cut(s)	334, 577, 745
TaiI	ACGT	1 cut(s)	284
TaqI	TCGA	3 cut(s)	460, 675, 955
TatI	WGTACW	1 cut(s)	859
TfiI	GAWTC	2 cut(s)	154, 932
Tru1I	TTAA	1 cut(s)	278
Tru9I	TTAA	1 cut(s)	278
TscAI	CASTG	2 cut(s)	255, 353
TseFI	GTSAC	1 cut(s)	494
Tsp45I	GTSAC	1 cut(s)	494
TspDTI	ATGAA	5 cut(s)	170, 189, 458, 629, 745
TspRI	CASTG	2 cut(s)	255, 353
VpaK11BI	GGWCC	1 cut(s)	64
XapI	RAATTY	3 cut(s)	616, 820, 1009
XceI	RCATGY	3 cut(s)	359, 451, 726
XcmI	CCANNNNNNNNNTGG	1 cut(s)	966
XspI	CTAG	1 cut(s)	780

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.