FvH4_1g08120

membrane protein C776.05-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0006796
Physical Location & Seq
Reverse (-)
4291379 .. 4294810
3432 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g08120.t1

Sequence Viewer

Length: 1218 bp
ATGTCCAACGGCGACGAATCCATGGAGGAGTATTTGGAGCCCGTCGAAGAAGCTAATGGGCATTCGTTTTACAGAGTGAAGCAACGGATAAAAGATCGATCCAAGAAAGTGGCGCAAACGAAAGAGATTTTTTCGAAGCAAGCGGAGCAGACCAAGGAGATCCTATCAAAACAGGCTGTGAAGATCGCTAAACAAGCTGAAGAGCATGAAAAGTTCATCAATAAGGTGACTCATCTTGTTGGGGTGCTTGGGTTTGGTGGCTTTTGCTTTCTGTTAGGAGCCAGACCTCAAGATACTCGATATGTATATTGTTTGTTCTATTTCATCTTTGTTCCTCTGCGGTGGATATACTATCGGTACAAGAAATGGCATTACTATCTCTTGGACTTCTGCTACTACGCCAATACCATCTTTTTGGTTGACCTTCTTCTCTATCCAAGGAATGAAAAGTTTTTCATGGTTTGCTTCTCATTTGCTGAGGGGCCATTAGCATGGGCACTGATTGTTTGGCGTTGTAGCTTGGTTTTTAGTTCACTTGACAAACTGGTTAGTGTCCTGATACATCTTTTACCAGGGTTAGTTTTCTTCACTATTCGATGGTGGGATCCAACAACATTTGCAGCTATGCATCCTGAAGGATCTTCTGCTAGAGCTTCGTGGCCTTATGTAGAAAGCAAAACTTATCTGTGGACATGGTTGTTTTTGGTGCCCCTGGTTGCATACTCCCTCTGGCAGGCTTTGTATTTTCTCATTGTCAACGTTTTACGCAGACAAAGGCTGTTAAGGGATCCTGAAGTGATGACTTCTTACAGAGAACTTTCAAAGAAGGCACAGAAAGCAAACAATATGTGGTGGCGCTTAAGTGGTGTGCTTGGGGATCAAAATCGGTTGTTCATGTACATTCTGCTCCAAGCCATATTTACTGTGGCAACCATGGCACTCACAGTCCCTATCTTCTTGTCGTATGAATTACATGTAAGTTTCCAGATCCTGAAGGTCTGCACATCTGTTTGGAATGGAGGAAGCTTTTTACTTGAGGTAATGCCTAGACAAGTGATTCTCAAGGAGAAGAAGAAGAAAGCAGTAGTGGAACCAACAGATGCACAGGTAGAACAAACCTTAGAAGTGCAGCCAACAAAAACACAGCTAGATCAACCCTTAGACCATGACGCAGCTGCCAGTACTTCTGTTGAGGCTTCCCAAACTTGCCAGTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2838

Protein Analysis

406

Amino Acids

47.27

Weight (kDa)

8.94

Isoelectric Point (pI)

41.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2838 PF10998 75 - 184 3.3e-36 Protein of unknown function (DUF2838)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 706
AciI CCGC 2 cut(s) 143, 340
AclI AACGTT 1 cut(s) 759
AclWI GGATC 9 cut(s) 93, 154, 599, 612, 646, 782, 795, 885, 982
AcuI CTGAAG 4 cut(s) 219, 654, 813, 1013
AfaI GTAC 3 cut(s) 359, 899, 1183
AfiI CCNNNNNNNGG 1 cut(s) 733
AflII CTTAAG 1 cut(s) 859
AflIII ACRYGT 1 cut(s) 973
AgsI TTSAA 1 cut(s) 822
AjnI CCWGG 2 cut(s) 571, 711
AluBI AGCT 8 cut(s) 53, 197, 519, 623, 653, 1026, 1147, 1175
AluI AGCT 8 cut(s) 53, 197, 519, 623, 653, 1026, 1147, 1175
AlwI GGATC 9 cut(s) 93, 154, 599, 612, 646, 782, 795, 885, 982
AlwNI CAGNNNCTG 1 cut(s) 991
AoxI GGCC 2 cut(s) 482, 659
ApeKI GCWGC 4 cut(s) 620, 1129, 1172, 1175
AspLEI GCGC 2 cut(s) 115, 858
AspS9I GGNCC 1 cut(s) 482
AsuHPI GGTGA 1 cut(s) 238
AsuII TTCGAA 1 cut(s) 134
BaeGI GKGCMC 2 cut(s) 499, 711
BamHI GGATCC 2 cut(s) 604, 787
BanI GGYRCC 1 cut(s) 706
BanII GRGCYC 1 cut(s) 42
BbvCI CCTCAGC 1 cut(s) 477
BbvI GCAGC 4 cut(s) 632, 1141, 1162, 1184
BccI CCATC 2 cut(s) 416, 591
BceAI ACGGC 1 cut(s) 25
BciT130I CCWGG 2 cut(s) 573, 713
BfaI CTAG 3 cut(s) 648, 1047, 1148
BfoI RGCGCY 1 cut(s) 859
BfrI CTTAAG 1 cut(s) 859
BisI GCNGC 4 cut(s) 621, 1130, 1173, 1176
BlsI GCNGC 4 cut(s) 622, 1131, 1174, 1177
BmcAI AGTACT 1 cut(s) 1183
Bme1390I CCNGG 2 cut(s) 573, 713
BmgT120I GGNCC 1 cut(s) 482
BmiI GGNNCC 7 cut(s) 39, 280, 483, 606, 708, 789, 1092
BmrFI CCNGG 2 cut(s) 573, 713
BmsI GCATC 2 cut(s) 637, 1090
Bpu10I CCTNAGC 1 cut(s) 477
Bpu14I TTCGAA 1 cut(s) 134
BpuEI CTTGAG 3 cut(s) 273, 1046, 1055
Bsa29I ATCGAT 1 cut(s) 97
BsaBI GATNNNNATC 1 cut(s) 882
BsaJI CCNNGG 6 cut(s) 21, 153, 437, 572, 711, 933
Bsc4I CCNNNNNNNGG 1 cut(s) 733
Bse1I ACTGG 3 cut(s) 549, 1179, 1210
Bse8I GATNNNNATC 1 cut(s) 882
BseBI CCWGG 2 cut(s) 573, 713
BseCI ATCGAT 1 cut(s) 97
BseDI CCNNGG 6 cut(s) 21, 153, 437, 572, 711, 933
BseGI GGATG 1 cut(s) 628
BseJI GATNNNNATC 1 cut(s) 882
BseLI CCNNNNNNNGG 1 cut(s) 733
BseMII CTCAG 1 cut(s) 468
BseNI ACTGG 3 cut(s) 549, 1179, 1210
BseRI GAGGAG 1 cut(s) 41
BseSI GKGCMC 2 cut(s) 499, 711
BseXI GCAGC 4 cut(s) 632, 1141, 1162, 1184
BsgI GTGCAG 2 cut(s) 985, 1148
BshFI GGCC 2 cut(s) 484, 661
BshNI GGYRCC 1 cut(s) 706
BshVI ATCGAT 1 cut(s) 97
BslFI GGGAC 1 cut(s) 932
BslI CCNNNNNNNGG 1 cut(s) 733
BsmFI GGGAC 1 cut(s) 932
BsmI GAATGC 1 cut(s) 61
BsnI GGCC 2 cut(s) 484, 661
Bsp119I TTCGAA 1 cut(s) 134
Bsp1286I GDGCHC 3 cut(s) 42, 499, 711
Bsp1407I TGTACA 1 cut(s) 897
Bsp19I CCATGG 2 cut(s) 21, 933
BspACI CCGC 2 cut(s) 143, 340
BspANI GGCC 2 cut(s) 484, 661
BspCNI CTCAG 1 cut(s) 469
BspDI ATCGAT 1 cut(s) 97
BspLI GGNNCC 7 cut(s) 39, 280, 483, 606, 708, 789, 1092
BspPI GGATC 9 cut(s) 93, 154, 599, 612, 646, 782, 795, 885, 982
BspQI GCTCTTC 1 cut(s) 195
BspT104I TTCGAA 1 cut(s) 134
BspT107I GGYRCC 1 cut(s) 706
BspTI CTTAAG 1 cut(s) 859
BsrGI TGTACA 1 cut(s) 897
BsrI ACTGG 3 cut(s) 549, 1179, 1210
BssECI CCNNGG 6 cut(s) 21, 153, 437, 572, 711, 933
BssT1I CCWWGG 4 cut(s) 21, 153, 437, 933
Bst2UI CCWGG 2 cut(s) 573, 713
Bst4CI ACNGT 2 cut(s) 925, 946
Bst6I CTCTTC 1 cut(s) 195
BstAFI CTTAAG 1 cut(s) 859
BstAUI TGTACA 1 cut(s) 897
BstBI TTCGAA 1 cut(s) 134
BstC8I GCNNGC 2 cut(s) 141, 735
BstDEI CTNAG 3 cut(s) 477, 1120, 1159
BstDSI CCRYGG 2 cut(s) 21, 933
BstENI CCTNNNNNAGG 1 cut(s) 731
BstF5I GGATG 1 cut(s) 628
BstH2I RGCGCY 1 cut(s) 859
BstHHI GCGC 2 cut(s) 115, 858
BstMWI GCNNNNNNNGC 4 cut(s) 145, 194, 836, 935
BstNI CCWGG 2 cut(s) 573, 713
BstNSI RCATGY 1 cut(s) 977
BstSCI CCNGG 2 cut(s) 571, 711
BstSLI GKGCMC 2 cut(s) 499, 711
BstV1I GCAGC 4 cut(s) 632, 1141, 1162, 1184
BstX2I RGATCY 5 cut(s) 159, 604, 638, 787, 987
BstXI CCANNNNNNTGG 3 cut(s) 109, 415, 492
BstYI RGATCY 5 cut(s) 159, 604, 638, 787, 987
Bsu15I ATCGAT 1 cut(s) 97
BsuRI GGCC 2 cut(s) 484, 661
BsuTUI ATCGAT 1 cut(s) 97
BtgI CCRYGG 2 cut(s) 21, 933
BtsCI GGATG 1 cut(s) 628
BtsIMutI CAGTG 1 cut(s) 497
Cac8I GCNNGC 2 cut(s) 141, 735
CaiI CAGNNNCTG 1 cut(s) 991
CfoI GCGC 2 cut(s) 115, 858
Cfr13I GGNCC 1 cut(s) 482
ClaI ATCGAT 1 cut(s) 97
CseI GACGC 1 cut(s) 1178
Csp6I GTAC 3 cut(s) 358, 898, 1182
CviAII CATG 9 cut(s) 22, 206, 457, 492, 693, 895, 934, 974, 1166
CviQI GTAC 3 cut(s) 358, 898, 1182
DdeI CTNAG 3 cut(s) 477, 1120, 1159
Eam1104I CTCTTC 1 cut(s) 195
EarI CTCTTC 1 cut(s) 195
Eco130I CCWWGG 4 cut(s) 21, 153, 437, 933
Eco24I GRGCYC 1 cut(s) 42
Eco57I CTGAAG 4 cut(s) 219, 654, 813, 1013
EcoNI CCTNNNNNAGG 1 cut(s) 731
EcoRII CCWGG 2 cut(s) 571, 711
EcoT14I CCWWGG 4 cut(s) 21, 153, 437, 933
EcoT22I ATGCAT 1 cut(s) 630
EcoT38I GRGCYC 1 cut(s) 42
ErhI CCWWGG 4 cut(s) 21, 153, 437, 933
FaeI CATG 9 cut(s) 25, 209, 460, 495, 696, 898, 937, 977, 1169
FalI AAGNNNNNCTT 2 cut(s) 664, 696
FaqI GGGAC 1 cut(s) 932
FatI CATG 9 cut(s) 21, 205, 456, 491, 692, 894, 933, 973, 1165
Fnu4HI GCNGC 4 cut(s) 621, 1130, 1173, 1176
FokI GGATG 1 cut(s) 615
FriOI GRGCYC 1 cut(s) 42
Fsp4HI GCNGC 4 cut(s) 621, 1130, 1173, 1176
FspBI CTAG 3 cut(s) 648, 1047, 1148
GlaI GCGC 2 cut(s) 114, 857
GluI GCNGC 4 cut(s) 621, 1130, 1173, 1176
HaeII RGCGCY 1 cut(s) 859
HaeIII GGCC 2 cut(s) 484, 661
HgaI GACGC 1 cut(s) 1178
HhaI GCGC 2 cut(s) 115, 858
Hin1II CATG 9 cut(s) 25, 209, 460, 495, 696, 898, 937, 977, 1169
Hin6I GCGC 2 cut(s) 113, 856
HinP1I GCGC 2 cut(s) 113, 856
HincII GTYRAC 2 cut(s) 421, 757
HindII GTYRAC 2 cut(s) 421, 757
HindIII AAGCTT 1 cut(s) 1024
HinfI GANTC 3 cut(s) 17, 229, 1057
HphI GGTGA 1 cut(s) 238
Hpy166II GTNNAC 4 cut(s) 421, 533, 690, 757
Hpy188III TCNNGA 6 cut(s) 290, 556, 632, 791, 985, 991
Hpy8I GTNNAC 4 cut(s) 421, 533, 690, 757
Hpy99I CGWCG 2 cut(s) 17, 47
HpyAV CCTTC 4 cut(s) 434, 629, 820, 988
HpyCH4III ACNGT 2 cut(s) 925, 946
HpyCH4IV ACGT 1 cut(s) 759
HpyCH4V TGCA 6 cut(s) 620, 628, 719, 1002, 1103, 1129
HpyF10VI GCNNNNNNNGC 4 cut(s) 145, 194, 836, 935
HpyF3I CTNAG 3 cut(s) 477, 1120, 1159
HpySE526I ACGT 1 cut(s) 759
Hsp92II CATG 9 cut(s) 25, 209, 460, 495, 696, 898, 937, 977, 1169
HspAI GCGC 2 cut(s) 113, 856
LguI GCTCTTC 1 cut(s) 195
LmnI GCTCC 4 cut(s) 37, 145, 278, 912
Lsp1109I GCAGC 4 cut(s) 632, 1141, 1162, 1184
LweI GCATC 2 cut(s) 637, 1090
MaeI CTAG 3 cut(s) 648, 1047, 1148
MaeII ACGT 1 cut(s) 759
MaeIII GTNAC 1 cut(s) 226
MflI RGATCY 5 cut(s) 159, 604, 638, 787, 987
MhlI GDGCHC 3 cut(s) 42, 499, 711
MluCI AATT 1 cut(s) 968
MlyI GAGTC 1 cut(s) 223
MmeI TCCRAC 2 cut(s) 30, 632
MnlI CCTC 8 cut(s) 19, 297, 345, 472, 737, 1013, 1030, 1186
Mph1103I ATGCAT 1 cut(s) 630
MseI TTAA 2 cut(s) 782, 860
MslI CAYNNNNRTG 1 cut(s) 490
MspA1I CMGCKG 1 cut(s) 1175
MspCI CTTAAG 1 cut(s) 859
MspR9I CCNGG 2 cut(s) 573, 713
Mva1269I GAATGC 1 cut(s) 61
MvaI CCWGG 2 cut(s) 573, 713
MwoI GCNNNNNNNGC 4 cut(s) 145, 194, 836, 935
NcoI CCATGG 2 cut(s) 21, 933
NlaIII CATG 9 cut(s) 25, 209, 460, 495, 696, 898, 937, 977, 1169
NlaIV GGNNCC 7 cut(s) 39, 280, 483, 606, 708, 789, 1092
NmuCI GTSAC 1 cut(s) 226
NsiI ATGCAT 1 cut(s) 630
NspI RCATGY 1 cut(s) 977
NspV TTCGAA 1 cut(s) 134
PciI ACATGT 1 cut(s) 973
PciSI GCTCTTC 1 cut(s) 195
PctI GAATGC 1 cut(s) 61
PfeI GAWTC 2 cut(s) 17, 1057
PkrI GCNGC 4 cut(s) 622, 1131, 1174, 1177
PleI GAGTC 1 cut(s) 223
PpsI GAGTC 1 cut(s) 223
PscI ACATGT 1 cut(s) 973
Psp1406I AACGTT 1 cut(s) 759
Psp6I CCWGG 2 cut(s) 571, 711
PspGI CCWGG 2 cut(s) 571, 711
PspN4I GGNNCC 7 cut(s) 39, 280, 483, 606, 708, 789, 1092
PspPI GGNCC 1 cut(s) 482
PstNI CAGNNNCTG 1 cut(s) 991
PsuI RGATCY 5 cut(s) 159, 604, 638, 787, 987
PvuII CAGCTG 1 cut(s) 1175
RsaI GTAC 3 cut(s) 359, 899, 1183
RsaNI GTAC 3 cut(s) 358, 898, 1182
RseI CAYNNNNRTG 1 cut(s) 490
SapI GCTCTTC 1 cut(s) 195
SaqAI TTAA 2 cut(s) 782, 860
SatI GCNGC 4 cut(s) 621, 1130, 1173, 1176
Sau96I GGNCC 1 cut(s) 482
ScaI AGTACT 1 cut(s) 1183
SchI GAGTC 1 cut(s) 223
ScrFI CCNGG 2 cut(s) 573, 713
SduI GDGCHC 3 cut(s) 42, 499, 711
SfaNI GCATC 2 cut(s) 637, 1090
SfuI TTCGAA 1 cut(s) 134
SmiMI CAYNNNNRTG 1 cut(s) 490
SmlI CTYRAG 4 cut(s) 288, 859, 1034, 1061
SmoI CTYRAG 4 cut(s) 288, 859, 1034, 1061
Sse9I AATT 1 cut(s) 968
SsiI CCGC 2 cut(s) 143, 340
SspMI CTAG 3 cut(s) 648, 1047, 1148
StyD4I CCNGG 2 cut(s) 571, 711
StyI CCWWGG 4 cut(s) 21, 153, 437, 933
TaaI ACNGT 2 cut(s) 925, 946
TaiI ACGT 1 cut(s) 762
TaqI TCGA 5 cut(s) 45, 97, 134, 298, 595
TasI AATT 1 cut(s) 968
TatI WGTACW 2 cut(s) 897, 1181
TfiI GAWTC 2 cut(s) 17, 1057
Tru1I TTAA 2 cut(s) 782, 860
Tru9I TTAA 2 cut(s) 782, 860
TscAI CASTG 1 cut(s) 504
TseFI GTSAC 1 cut(s) 226
TseI GCWGC 4 cut(s) 620, 1129, 1172, 1175
Tsp45I GTSAC 1 cut(s) 226
TspDTI ATGAA 7 cut(s) 205, 222, 313, 445, 459, 883, 981
TspGWI ACGGA 1 cut(s) 100
TspRI CASTG 1 cut(s) 504
Vha464I CTTAAG 1 cut(s) 859
XagI CCTNNNNNAGG 1 cut(s) 731
XceI RCATGY 1 cut(s) 977
XcmI CCANNNNNNNNNTGG 1 cut(s) 922
XspI CTAG 3 cut(s) 648, 1047, 1148
ZrmI AGTACT 1 cut(s) 1183
Zsp2I ATGCAT 1 cut(s) 630
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.