Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002193.1

Orthogroup ID

OG0006796

Physical Location & Seq

Genomic Coordinates Reverse (-)

642 .. 3168

Gene Structure 2527 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002193.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

atgtctaattgcgacgaacccatggaggagtacgcggagcccgtcgaagaaactaatggtcattcgttttacagagtgaagcaacggttaaaagatcgatctaagaaagtggcgcaaacgaaagagattttgtcgaagcaagcggttcagaccaaggagatcctgtcaaaacaggctgtgaagatcgctaaacaagccgaagaacatgaaaagttcatcaataaggtgacgcatcttgttggggtgcttgggtttggtggcttttgctttctcttaggagccagacctcaagatactcgatatgtatattgtttgttctatttcatctttgttcctcttcgttggatatactatcggtacaagaaatggcattactacctcttggacttctgctactatgccaatacgatctttttggttgaccttcttctatatccaaggaatgaaaagtttttcatggtttgtttctcatttgctgaggggccattagcatgggcactgattgtttggcgttgtagcttggtttttagttcacttgacaaattagtcagtgtcctgatacatcttttacctgggttggttttcttcactattcgatggtgggatccagcaacatttgcagccatgcatcctgaaggatcttctgccagagcttcttggccttatgtagaaagcaaaacttatctgtggacatggttgtttgtggtgccgctggtcgcatactccctctggcagcttttgtattttctcattgtcaacgttttacgccgacaaaggctgttaagggatcctgaagtgatgacttcttacagagaactctcgaagaaggcacaaaaagcaaacaatttgtggtggcgcttaagcggtttgcttggggatcaaaatcgattgtttatgtacattgtgctccaagccatatttactgtggctaccatggcgctcacagtccctatcttcttgtcgtatgaattacatgtagttttccagatcctcaaggtctctgcatctgtttggaatggaggaagctttttacttgaggtaatgcctagacaagtgattctcaaggagaagaagaagaaagcagaagtacaaccaacagaaacacaggtagaccaaaccttagaagtgcagccaatacaaacgcagctagatcaatccttaaaccatgacgcagctgccaacaattctgttgaaattgttgaggcttccccaaacttgacagtccaaacagctgtgttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2838

Protein Analysis

413

Amino Acids

48.16

Weight (kDa)

8.99

Isoelectric Point (pI)

41.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35460 AT5G35460
fragaria_vesca	FvH4_1g08120
malus_domestica	MD02G1085700.v1.1 MD15G1212900.v1.1
prunus_persica	Prupe.7G204000_v2.0.a1 Prupe.7G204000_v2.0.a1
pyrus_communis	pycom02g06850 pycom15g18920
rosa_chinensis	RchiOBHm_Chr2g0094171
rosa_laevigata	RLG00000016462
rosa_multiflora	Rmu_sc0002193.1_g000001 Rmu_sc0002892.1_g000079
rosa_roxburghii	Rroxscaffold_2G00147420
rosa_rugosa	Rorug02G0041500
rosa_samantha	Rh2AG089200 Rh2BG089300 Rh2BG465000 Rh2CG091800 Rh2DG088300 Rh2DG473900 Rh5DG076200 Rh5DG406800 Rh6BG042400
rosa_wichuraiana	Rw7G037100 Rw7G039790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	545
AccB1I	GGYRCC	1 cut(s)	706
AccI	GTMKAC	1 cut(s)	1110
AccII	CGCG	1 cut(s)	35
AciI	CCGC	4 cut(s)	35, 143, 710, 864
AclI	AACGTT	1 cut(s)	759
AclWI	GGATC	8 cut(s)	154, 599, 612, 646, 782, 795, 885, 982
AcuI	CTGAAG	2 cut(s)	654, 813
AfaI	GTAC	4 cut(s)	32, 359, 899, 1089
AflII	CTTAAG	1 cut(s)	859
AflIII	ACRYGT	1 cut(s)	973
AgsI	TTSAA	1 cut(s)	1193
AjnI	CCWGG	1 cut(s)	571
AluBI	AGCT	7 cut(s)	519, 653, 736, 1026, 1147, 1175, 1232
AluI	AGCT	7 cut(s)	519, 653, 736, 1026, 1147, 1175, 1232
Alw21I	GWGCWC	1 cut(s)	909
Alw26I	GTCTC	1 cut(s)	1003
AlwI	GGATC	8 cut(s)	154, 599, 612, 646, 782, 795, 885, 982
AoxI	GGCC	2 cut(s)	482, 659
ApeKI	GCWGC	6 cut(s)	620, 733, 1129, 1144, 1172, 1175
AspLEI	GCGC	3 cut(s)	115, 858, 940
AspS9I	GGNCC	1 cut(s)	482
AsuHPI	GGTGA	1 cut(s)	238
BaeGI	GKGCMC	1 cut(s)	499
BamHI	GGATCC	2 cut(s)	604, 787
BanI	GGYRCC	1 cut(s)	706
BanII	GRGCYC	1 cut(s)	42
Bbv12I	GWGCWC	1 cut(s)	909
BbvCI	CCTCAGC	1 cut(s)	477
BbvI	GCAGC	6 cut(s)	632, 745, 1141, 1156, 1162, 1184
BccI	CCATC	1 cut(s)	591
BciT130I	CCWGG	1 cut(s)	573
BcoDI	GTCTC	1 cut(s)	1003
BfaI	CTAG	2 cut(s)	1047, 1148
BfoI	RGCGCY	2 cut(s)	859, 941
BfrI	CTTAAG	1 cut(s)	859
BisI	GCNGC	7 cut(s)	621, 710, 734, 1130, 1145, 1173, 1176
BlsI	GCNGC	7 cut(s)	622, 711, 735, 1131, 1146, 1174, 1177
Bme1390I	CCNGG	1 cut(s)	573
BmgT120I	GGNCC	1 cut(s)	482
BmiI	GGNNCC	6 cut(s)	39, 280, 483, 606, 708, 789
BmrFI	CCNGG	1 cut(s)	573
BmsI	GCATC	3 cut(s)	241, 637, 1013
Bpu10I	CCTNAGC	1 cut(s)	477
BpuEI	CTTGAG	4 cut(s)	273, 977, 1046, 1055
Bsa29I	ATCGAT	2 cut(s)	97, 886
BsaBI	GATNNNNATC	1 cut(s)	882
BsaI	GGTCTC	1 cut(s)	1003
BsaJI	CCNNGG	5 cut(s)	21, 153, 437, 572, 933
BsaXI	ACNNNNNCTCC	2 cut(s)	149, 179
Bse8I	GATNNNNATC	1 cut(s)	882
BseBI	CCWGG	1 cut(s)	573
BseCI	ATCGAT	2 cut(s)	97, 886
BseDI	CCNNGG	5 cut(s)	21, 153, 437, 572, 933
BseGI	GGATG	1 cut(s)	628
BseJI	GATNNNNATC	1 cut(s)	882
BseMII	CTCAG	1 cut(s)	468
BseRI	GAGGAG	1 cut(s)	41
BseSI	GKGCMC	1 cut(s)	499
BseXI	GCAGC	6 cut(s)	632, 745, 1141, 1156, 1162, 1184
BsgI	GTGCAG	1 cut(s)	1148
Bsh1236I	CGCG	1 cut(s)	35
BshFI	GGCC	2 cut(s)	484, 661
BshNI	GGYRCC	1 cut(s)	706
BshVI	ATCGAT	2 cut(s)	97, 886
BsiHKAI	GWGCWC	1 cut(s)	909
BslFI	GGGAC	1 cut(s)	932
BsmAI	GTCTC	1 cut(s)	1003
BsmFI	GGGAC	1 cut(s)	932
BsnI	GGCC	2 cut(s)	484, 661
Bso31I	GGTCTC	1 cut(s)	1003
Bsp1286I	GDGCHC	3 cut(s)	42, 499, 909
Bsp1407I	TGTACA	1 cut(s)	897
Bsp19I	CCATGG	2 cut(s)	21, 933
BspACI	CCGC	4 cut(s)	35, 143, 710, 864
BspANI	GGCC	2 cut(s)	484, 661
BspCNI	CTCAG	1 cut(s)	469
BspDI	ATCGAT	2 cut(s)	97, 886
BspFNI	CGCG	1 cut(s)	35
BspLI	GGNNCC	6 cut(s)	39, 280, 483, 606, 708, 789
BspPI	GGATC	8 cut(s)	154, 599, 612, 646, 782, 795, 885, 982
BspT107I	GGYRCC	1 cut(s)	706
BspTI	CTTAAG	1 cut(s)	859
BspTNI	GGTCTC	1 cut(s)	1003
BsrGI	TGTACA	1 cut(s)	897
BssECI	CCNNGG	5 cut(s)	21, 153, 437, 572, 933
BssT1I	CCWWGG	4 cut(s)	21, 153, 437, 933
Bst2UI	CCWGG	1 cut(s)	573
Bst4CI	ACNGT	4 cut(s)	87, 925, 946, 1222
Bst6I	CTCTTC	1 cut(s)	342
BstAFI	CTTAAG	1 cut(s)	859
BstAPI	GCANNNNNTGC	1 cut(s)	617
BstAUI	TGTACA	1 cut(s)	897
BstC8I	GCNNGC	1 cut(s)	141
BstDEI	CTNAG	4 cut(s)	102, 274, 477, 1120
BstDSI	CCRYGG	2 cut(s)	21, 933
BstF5I	GGATG	1 cut(s)	628
BstFNI	CGCG	1 cut(s)	35
BstH2I	RGCGCY	2 cut(s)	859, 941
BstHHI	GCGC	3 cut(s)	115, 858, 940
BstMAI	GTCTC	1 cut(s)	1003
BstMWI	GCNNNNNNNGC	4 cut(s)	194, 617, 836, 935
BstNI	CCWGG	1 cut(s)	573
BstNSI	RCATGY	1 cut(s)	977
BstSCI	CCNGG	1 cut(s)	571
BstSLI	GKGCMC	1 cut(s)	499
BstUI	CGCG	1 cut(s)	35
BstV1I	GCAGC	6 cut(s)	632, 745, 1141, 1156, 1162, 1184
BstX2I	RGATCY	5 cut(s)	159, 604, 638, 787, 987
BstXI	CCANNNNNNTGG	1 cut(s)	492
BstYI	RGATCY	5 cut(s)	159, 604, 638, 787, 987
Bsu15I	ATCGAT	2 cut(s)	97, 886
BsuRI	GGCC	2 cut(s)	484, 661
BsuTUI	ATCGAT	2 cut(s)	97, 886
BtgI	CCRYGG	2 cut(s)	21, 933
BtsCI	GGATG	1 cut(s)	628
BtsIMutI	CAGTG	2 cut(s)	497, 556
Cac8I	GCNNGC	1 cut(s)	141
CfoI	GCGC	3 cut(s)	115, 858, 940
Cfr13I	GGNCC	1 cut(s)	482
ClaI	ATCGAT	2 cut(s)	97, 886
CseI	GACGC	2 cut(s)	238, 1178
Csp6I	GTAC	4 cut(s)	31, 358, 898, 1088
CviAII	CATG	9 cut(s)	22, 206, 457, 492, 625, 693, 934, 974, 1166
CviQI	GTAC	4 cut(s)	31, 358, 898, 1088
DdeI	CTNAG	4 cut(s)	102, 274, 477, 1120
DrdI	GACNNNNNNGTC	1 cut(s)	545
DseDI	GACNNNNNNGTC	1 cut(s)	545
Eam1104I	CTCTTC	1 cut(s)	342
EarI	CTCTTC	1 cut(s)	342
Eco130I	CCWWGG	4 cut(s)	21, 153, 437, 933
Eco24I	GRGCYC	1 cut(s)	42
Eco31I	GGTCTC	1 cut(s)	1003
Eco57I	CTGAAG	2 cut(s)	654, 813
EcoRII	CCWGG	1 cut(s)	571
EcoT14I	CCWWGG	4 cut(s)	21, 153, 437, 933
EcoT22I	ATGCAT	1 cut(s)	630
EcoT38I	GRGCYC	1 cut(s)	42
ErhI	CCWWGG	4 cut(s)	21, 153, 437, 933
FaeI	CATG	9 cut(s)	25, 209, 460, 495, 628, 696, 937, 977, 1169
FalI	AAGNNNNNCTT	2 cut(s)	664, 696
FaqI	GGGAC	1 cut(s)	932
FatI	CATG	9 cut(s)	21, 205, 456, 491, 624, 692, 933, 973, 1165
FblI	GTMKAC	1 cut(s)	1110
Fnu4HI	GCNGC	7 cut(s)	621, 710, 734, 1130, 1145, 1173, 1176
FokI	GGATG	1 cut(s)	615
FriOI	GRGCYC	1 cut(s)	42
Fsp4HI	GCNGC	7 cut(s)	621, 710, 734, 1130, 1145, 1173, 1176
FspBI	CTAG	2 cut(s)	1047, 1148
GlaI	GCGC	3 cut(s)	114, 857, 939
GluI	GCNGC	7 cut(s)	621, 710, 734, 1130, 1145, 1173, 1176
HaeII	RGCGCY	2 cut(s)	859, 941
HaeIII	GGCC	2 cut(s)	484, 661
HgaI	GACGC	2 cut(s)	238, 1178
HhaI	GCGC	3 cut(s)	115, 858, 940
Hin1II	CATG	9 cut(s)	25, 209, 460, 495, 628, 696, 937, 977, 1169
Hin6I	GCGC	3 cut(s)	113, 856, 938
HinP1I	GCGC	3 cut(s)	113, 856, 938
HincII	GTYRAC	2 cut(s)	421, 757
HindII	GTYRAC	2 cut(s)	421, 757
HindIII	AAGCTT	1 cut(s)	1024
HinfI	GANTC	1 cut(s)	1057
HphI	GGTGA	1 cut(s)	238
Hpy166II	GTNNAC	5 cut(s)	421, 533, 690, 757, 1111
Hpy188I	TCNGA	1 cut(s)	150
Hpy188III	TCNNGA	6 cut(s)	290, 556, 632, 791, 820, 985
Hpy8I	GTNNAC	5 cut(s)	421, 533, 690, 757, 1111
Hpy99I	CGWCG	2 cut(s)	17, 47
HpyAV	CCTTC	3 cut(s)	434, 629, 820
HpyCH4III	ACNGT	4 cut(s)	87, 925, 946, 1222
HpyCH4IV	ACGT	1 cut(s)	759
HpyCH4V	TGCA	4 cut(s)	620, 628, 1004, 1129
HpyF10VI	GCNNNNNNNGC	4 cut(s)	194, 617, 836, 935
HpyF3I	CTNAG	4 cut(s)	102, 274, 477, 1120
HpySE526I	ACGT	1 cut(s)	759
Hsp92II	CATG	9 cut(s)	25, 209, 460, 495, 628, 696, 937, 977, 1169
HspAI	GCGC	3 cut(s)	113, 856, 938
LmnI	GCTCC	3 cut(s)	37, 278, 912
Lsp1109I	GCAGC	6 cut(s)	632, 745, 1141, 1156, 1162, 1184
LweI	GCATC	3 cut(s)	241, 637, 1013
MaeI	CTAG	2 cut(s)	1047, 1148
MaeII	ACGT	1 cut(s)	759
MaeIII	GTNAC	1 cut(s)	226
MflI	RGATCY	5 cut(s)	159, 604, 638, 787, 987
MhlI	GDGCHC	3 cut(s)	42, 499, 909
MluCI	AATT	6 cut(s)	7, 542, 844, 968, 1183, 1194
MmeI	TCCRAC	1 cut(s)	323
Mph1103I	ATGCAT	1 cut(s)	630
MseI	TTAA	5 cut(s)	89, 782, 860, 1160, 1240
MslI	CAYNNNNRTG	1 cut(s)	490
MspA1I	CMGCKG	3 cut(s)	712, 1175, 1232
MspCI	CTTAAG	1 cut(s)	859
MspR9I	CCNGG	1 cut(s)	573
MvaI	CCWGG	1 cut(s)	573
MvnI	CGCG	1 cut(s)	35
MwoI	GCNNNNNNNGC	4 cut(s)	194, 617, 836, 935
NcoI	CCATGG	2 cut(s)	21, 933
NlaIII	CATG	9 cut(s)	25, 209, 460, 495, 628, 696, 937, 977, 1169
NlaIV	GGNNCC	6 cut(s)	39, 280, 483, 606, 708, 789
NmuCI	GTSAC	1 cut(s)	226
NsiI	ATGCAT	1 cut(s)	630
NspI	RCATGY	1 cut(s)	977
PciI	ACATGT	1 cut(s)	973
PcsI	WCGNNNNNNNCGW	1 cut(s)	39
PfeI	GAWTC	1 cut(s)	1057
PkrI	GCNGC	7 cut(s)	622, 711, 735, 1131, 1146, 1174, 1177
PscI	ACATGT	1 cut(s)	973
Psp1406I	AACGTT	1 cut(s)	759
Psp6I	CCWGG	1 cut(s)	571
PspGI	CCWGG	1 cut(s)	571
PspN4I	GGNNCC	6 cut(s)	39, 280, 483, 606, 708, 789
PspPI	GGNCC	1 cut(s)	482
PsuI	RGATCY	5 cut(s)	159, 604, 638, 787, 987
PvuII	CAGCTG	2 cut(s)	1175, 1232
RsaI	GTAC	4 cut(s)	32, 359, 899, 1089
RsaNI	GTAC	4 cut(s)	31, 358, 898, 1088
RseI	CAYNNNNRTG	1 cut(s)	490
SaqAI	TTAA	5 cut(s)	89, 782, 860, 1160, 1240
SatI	GCNGC	7 cut(s)	621, 710, 734, 1130, 1145, 1173, 1176
Sau96I	GGNCC	1 cut(s)	482
ScrFI	CCNGG	1 cut(s)	573
SduI	GDGCHC	3 cut(s)	42, 499, 909
SfaNI	GCATC	3 cut(s)	241, 637, 1013
SmiMI	CAYNNNNRTG	1 cut(s)	490
SmlI	CTYRAG	5 cut(s)	288, 859, 992, 1034, 1061
SmoI	CTYRAG	5 cut(s)	288, 859, 992, 1034, 1061
Sse9I	AATT	6 cut(s)	7, 542, 844, 968, 1183, 1194
SsiI	CCGC	4 cut(s)	35, 143, 710, 864
SspMI	CTAG	2 cut(s)	1047, 1148
StyD4I	CCNGG	1 cut(s)	571
StyI	CCWWGG	4 cut(s)	21, 153, 437, 933
TaaI	ACNGT	4 cut(s)	87, 925, 946, 1222
TaiI	ACGT	1 cut(s)	762
TaqI	TCGA	7 cut(s)	45, 97, 134, 298, 595, 821, 886
TasI	AATT	6 cut(s)	7, 542, 844, 968, 1183, 1194
TatI	WGTACW	2 cut(s)	897, 1087
TauI	GCSGC	1 cut(s)	712
TfiI	GAWTC	1 cut(s)	1057
Tru1I	TTAA	5 cut(s)	89, 782, 860, 1160, 1240
Tru9I	TTAA	5 cut(s)	89, 782, 860, 1160, 1240
TscAI	CASTG	2 cut(s)	504, 556
TseFI	GTSAC	1 cut(s)	226
TseI	GCWGC	6 cut(s)	620, 733, 1129, 1144, 1172, 1175
Tsp45I	GTSAC	1 cut(s)	226
TspDTI	ATGAA	6 cut(s)	205, 222, 313, 445, 459, 981
TspRI	CASTG	2 cut(s)	504, 556
Vha464I	CTTAAG	1 cut(s)	859
XceI	RCATGY	1 cut(s)	977
XcmI	CCANNNNNNNNNTGG	1 cut(s)	922
XmiI	GTMKAC	1 cut(s)	1110
XspI	CTAG	2 cut(s)	1047, 1148
Zsp2I	ATGCAT	1 cut(s)	630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.