Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0006796

Physical Location & Seq

Genomic Coordinates Reverse (-)

13422904 .. 13425749

Gene Structure 2846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g18920.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGTCCAGCGGCGACGACCCTATAGAGGAAACAAATGGGGATTCGTTTCACCAAGCAATGAGGCAACGGTTGAAAGATCGGTCAAAGAAAGTTGCTCAGACCAAAGAGATTTTATCGAAACAAGCGGTTCAGACCAGAGAGATCCTCTCAAAGCAGGCTGTGAAGATCGCCAAACAAGCTGAGGAGCATGAAAAGTTCATCAACAAGGTGACGCATTTTGTGGGGGTTCTCAGTTTCGGTGGATTTTGCTTCCTCTTAGGAGCAAGACCGCAAGATACGCGATATGTATATTGCTTGTTCTATTTCATCTTTGTTCCTCTTCGTTGGATATACTATCGGTTCAAGAAATGGCATTACTACCTTTTGGACTTTTGCTACTATGCCAACACTATATTTTTGGTTGACCTGCTTCTTTATCCAAGGAACGAAAAGTTTTTCATGGTTTGCTTCTCATTTGCTGAGGGGCCGTTAGCATGGGCATTGATTGTTTGGCGTTGTAGCTTGGTTTTTAGTTCTCTTGACAAACTTGTTAGTGTCCTCATACATCTTTTACCTGGGTTAGTTTTCTTCACTATTCGATGGTGGGATCCAGCAACTTTTGCAGCAATGCATCCAGAAGGAACTTCTCGCAGAGCTTCATGGCCTTACGTAGAAAATAAATCCTACCTTTGGGTATGGCTCTTTTGGGTGCCCTTGTTTGCTTACACCCTCTGGCAGGCTTTGTATTTTCTCATTGTCAATGTTCTACGTCGACAAAGGCTGTTGAGAGATCCCGAAGTCATGACTTCTTACAGGGAGCTCTCAAAGAAGGCACAGAAAGCAAACAATGTATGGTGGCGCTTGAGCGGTTTGCTTGGGGATCAGAATCGCTTGCTCATGTACACTCTACTCCAAGCCGTATTTACTGTGGCAACAATGGCGCTCACGGTCCCTATCTTCTTGTCGTATGAACTGCACATTATCTTCCAAATGCTCAAGGTTTCCGCATCTGTGTGGAACGGAGGTAGTTTCTTGCTGGAGGTAATGCCGAGACAAGTGATTCTCAAGGAGAAGAAGAAATCGGAAGTGCAGCCAACAGAGACTCGGGGAGATCAACCATCGGATTATGATCAAAGGACTCGGGGAGATCAACCATCGGATTATGATCAAAGGACGCACAATTCAGTCGAGGCATCCCCAAGTCCTCCGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2838

Protein Analysis

398

Amino Acids

46.65

Weight (kDa)

9.34

Isoelectric Point (pI)

47.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35460 AT5G35460
fragaria_vesca	FvH4_1g08120
malus_domestica	MD02G1085700.v1.1 MD15G1212900.v1.1
prunus_persica	Prupe.7G204000_v2.0.a1 Prupe.7G204000_v2.0.a1
pyrus_communis	pycom02g06850 pycom15g18920
rosa_chinensis	RchiOBHm_Chr2g0094171
rosa_laevigata	RLG00000016462
rosa_multiflora	Rmu_sc0002193.1_g000001 Rmu_sc0002892.1_g000079
rosa_roxburghii	Rroxscaffold_2G00147420
rosa_rugosa	Rorug02G0041500
rosa_samantha	Rh2AG089200 Rh2BG089300 Rh2BG465000 Rh2CG091800 Rh2DG088300 Rh2DG473900 Rh5DG076200 Rh5DG406800 Rh6BG042400
rosa_wichuraiana	Rw7G037100 Rw7G039790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	414
AccB1I	GGYRCC	1 cut(s)	688
AccBSI	CCGCTC	1 cut(s)	846
AccI	GTMKAC	1 cut(s)	751
AccII	CGCG	1 cut(s)	280
AciI	CCGC	5 cut(s)	9, 125, 269, 846, 984
AclWI	GGATC	5 cut(s)	136, 581, 594, 764, 867
AfaI	GTAC	1 cut(s)	881
AfiI	CCNNNNNNNGG	3 cut(s)	25, 669, 715
AgsI	TTSAA	2 cut(s)	73, 343
AjnI	CCWGG	1 cut(s)	553
AluBI	AGCT	4 cut(s)	179, 501, 635, 799
AluI	AGCT	4 cut(s)	179, 501, 635, 799
Alw21I	GWGCWC	1 cut(s)	801
Alw26I	GTCTC	2 cut(s)	1024, 1073
AlwI	GGATC	5 cut(s)	136, 581, 594, 764, 867
Ama87I	CYCGRG	2 cut(s)	1083, 1119
AoxI	GGCC	2 cut(s)	464, 641
ApeKI	GCWGC	2 cut(s)	602, 1069
AspLEI	GCGC	2 cut(s)	840, 922
AspS9I	GGNCC	2 cut(s)	464, 928
AsuHPI	GGTGA	2 cut(s)	41, 220
AvaI	CYCGRG	2 cut(s)	1083, 1119
AvaII	GGWCC	1 cut(s)	928
BaeGI	GKGCMC	1 cut(s)	693
BamHI	GGATCC	1 cut(s)	586
BanI	GGYRCC	1 cut(s)	688
BanII	GRGCYC	1 cut(s)	801
Bbv12I	GWGCWC	1 cut(s)	801
BbvCI	CCTCAGC	2 cut(s)	180, 459
BbvI	GCAGC	2 cut(s)	614, 1081
BccI	CCATC	3 cut(s)	573, 1105, 1141
BceAI	ACGGC	2 cut(s)	451, 881
BciT130I	CCWGG	1 cut(s)	555
BclI	TGATCA	2 cut(s)	1108, 1144
BcoDI	GTCTC	2 cut(s)	1024, 1073
BfaI	CTAG	1 cut(s)	1192
BfmI	CTRYAG	1 cut(s)	21
BfoI	RGCGCY	2 cut(s)	841, 923
BfuAI	ACCTGC	1 cut(s)	414
BisI	GCNGC	3 cut(s)	10, 603, 1070
BlsI	GCNGC	3 cut(s)	11, 604, 1071
Bme1390I	CCNGG	1 cut(s)	555
Bme18I	GGWCC	1 cut(s)	928
BmeT110I	CYCGRG	2 cut(s)	1083, 1119
BmgT120I	GGNCC	2 cut(s)	464, 928
BmiI	GGNNCC	4 cut(s)	465, 588, 690, 930
BmrFI	CCNGG	1 cut(s)	555
BmsI	GCATC	3 cut(s)	619, 995, 1181
BplI	GAGNNNNNCTC	4 cut(s)	129, 161, 131, 163
BpmI	CTGGAG	1 cut(s)	1037
Bpu10I	CCTNAGC	2 cut(s)	180, 459
BpuEI	CTTGAG	3 cut(s)	862, 959, 1028
BsaAI	YACGTR	1 cut(s)	649
BsaBI	GATNNNNATC	3 cut(s)	864, 1107, 1143
BsaJI	CCNNGG	2 cut(s)	419, 554
Bsc4I	CCNNNNNNNGG	3 cut(s)	25, 669, 715
Bse3DI	GCAATG	2 cut(s)	63, 612
Bse8I	GATNNNNATC	3 cut(s)	864, 1107, 1143
BseBI	CCWGG	1 cut(s)	555
BseDI	CCNNGG	2 cut(s)	419, 554
BseGI	GGATG	2 cut(s)	610, 1172
BseJI	GATNNNNATC	3 cut(s)	864, 1107, 1143
BseLI	CCNNNNNNNGG	3 cut(s)	25, 669, 715
BseMI	GCAATG	2 cut(s)	63, 612
BseMII	CTCAG	4 cut(s)	110, 171, 244, 450
BseRI	GAGGAG	1 cut(s)	197
BseSI	GKGCMC	1 cut(s)	693
BseXI	GCAGC	2 cut(s)	614, 1081
BsgI	GTGCAG	2 cut(s)	938, 1088
Bsh1236I	CGCG	1 cut(s)	280
BshFI	GGCC	2 cut(s)	466, 643
BshNI	GGYRCC	1 cut(s)	688
BsiHKAI	GWGCWC	1 cut(s)	801
BsiHKCI	CYCGRG	2 cut(s)	1083, 1119
BslFI	GGGAC	1 cut(s)	914
BslI	CCNNNNNNNGG	3 cut(s)	25, 669, 715
BsmAI	GTCTC	2 cut(s)	1024, 1073
BsmFI	GGGAC	1 cut(s)	914
BsnI	GGCC	2 cut(s)	466, 643
BsoBI	CYCGRG	2 cut(s)	1083, 1119
Bsp1286I	GDGCHC	2 cut(s)	693, 801
Bsp1407I	TGTACA	1 cut(s)	879
BspACI	CCGC	5 cut(s)	9, 125, 269, 846, 984
BspANI	GGCC	2 cut(s)	466, 643
BspCNI	CTCAG	4 cut(s)	109, 172, 243, 451
BspFNI	CGCG	1 cut(s)	280
BspHI	TCATGA	1 cut(s)	780
BspLI	GGNNCC	4 cut(s)	465, 588, 690, 930
BspMI	ACCTGC	1 cut(s)	414
BspPI	GGATC	5 cut(s)	136, 581, 594, 764, 867
BspT107I	GGYRCC	1 cut(s)	688
BsrBI	CCGCTC	1 cut(s)	846
BsrDI	GCAATG	2 cut(s)	63, 612
BsrGI	TGTACA	1 cut(s)	879
BssECI	CCNNGG	2 cut(s)	419, 554
BssT1I	CCWWGG	1 cut(s)	419
Bst2UI	CCWGG	1 cut(s)	555
Bst4CI	ACNGT	3 cut(s)	69, 907, 928
Bst6I	CTCTTC	1 cut(s)	324
BstAPI	GCANNNNNTGC	1 cut(s)	599
BstAUI	TGTACA	1 cut(s)	879
BstBAI	YACGTR	1 cut(s)	649
BstC8I	GCNNGC	3 cut(s)	156, 717, 872
BstDEI	CTNAG	5 cut(s)	96, 180, 230, 256, 459
BstENI	CCTNNNNNAGG	1 cut(s)	713
BstF5I	GGATG	2 cut(s)	610, 1172
BstFNI	CGCG	1 cut(s)	280
BstH2I	RGCGCY	2 cut(s)	841, 923
BstHHI	GCGC	2 cut(s)	840, 922
BstMAI	GTCTC	2 cut(s)	1024, 1073
BstMWI	GCNNNNNNNGC	5 cut(s)	176, 277, 599, 818, 917
BstNI	CCWGG	1 cut(s)	555
BstSCI	CCNGG	1 cut(s)	553
BstSFI	CTRYAG	1 cut(s)	21
BstSLI	GKGCMC	1 cut(s)	693
BstSNI	TACGTA	1 cut(s)	649
BstUI	CGCG	1 cut(s)	280
BstV1I	GCAGC	2 cut(s)	614, 1081
BstX2I	RGATCY	3 cut(s)	141, 586, 769
BstYI	RGATCY	3 cut(s)	141, 586, 769
BsuRI	GGCC	2 cut(s)	466, 643
BtsCI	GGATG	2 cut(s)	610, 1172
BveI	ACCTGC	1 cut(s)	414
Cac8I	GCNNGC	3 cut(s)	156, 717, 872
CciI	TCATGA	1 cut(s)	780
CfoI	GCGC	2 cut(s)	840, 922
Cfr13I	GGNCC	2 cut(s)	464, 928
CseI	GACGC	2 cut(s)	220, 1162
Csp6I	GTAC	1 cut(s)	880
CviAII	CATG	6 cut(s)	188, 439, 474, 639, 781, 877
CviQI	GTAC	1 cut(s)	880
DdeI	CTNAG	5 cut(s)	96, 180, 230, 256, 459
Eam1104I	CTCTTC	1 cut(s)	324
EarI	CTCTTC	1 cut(s)	324
Ecl136II	GAGCTC	1 cut(s)	799
Eco105I	TACGTA	1 cut(s)	649
Eco130I	CCWWGG	1 cut(s)	419
Eco24I	GRGCYC	1 cut(s)	801
Eco47I	GGWCC	1 cut(s)	928
Eco53kI	GAGCTC	1 cut(s)	799
Eco88I	CYCGRG	2 cut(s)	1083, 1119
EcoICRI	GAGCTC	1 cut(s)	799
EcoNI	CCTNNNNNAGG	1 cut(s)	713
EcoRII	CCWGG	1 cut(s)	553
EcoT14I	CCWWGG	1 cut(s)	419
EcoT22I	ATGCAT	1 cut(s)	612
EcoT38I	GRGCYC	1 cut(s)	801
ErhI	CCWWGG	1 cut(s)	419
FaeI	CATG	6 cut(s)	191, 442, 477, 642, 784, 880
FaqI	GGGAC	1 cut(s)	914
FatI	CATG	6 cut(s)	187, 438, 473, 638, 780, 876
FbaI	TGATCA	2 cut(s)	1108, 1144
FblI	GTMKAC	1 cut(s)	751
Fnu4HI	GCNGC	3 cut(s)	10, 603, 1070
FokI	GGATG	2 cut(s)	597, 1159
FriOI	GRGCYC	1 cut(s)	801
Fsp4HI	GCNGC	3 cut(s)	10, 603, 1070
FspBI	CTAG	1 cut(s)	1192
GlaI	GCGC	2 cut(s)	839, 921
GluI	GCNGC	3 cut(s)	10, 603, 1070
GsuI	CTGGAG	1 cut(s)	1037
HaeII	RGCGCY	2 cut(s)	841, 923
HaeIII	GGCC	2 cut(s)	466, 643
HgaI	GACGC	2 cut(s)	220, 1162
HhaI	GCGC	2 cut(s)	840, 922
Hin1II	CATG	6 cut(s)	191, 442, 477, 642, 784, 880
Hin6I	GCGC	2 cut(s)	838, 920
HinP1I	GCGC	2 cut(s)	838, 920
HincII	GTYRAC	2 cut(s)	403, 752
HindII	GTYRAC	2 cut(s)	403, 752
HinfI	GANTC	5 cut(s)	41, 865, 1039, 1081, 1117
HphI	GGTGA	2 cut(s)	41, 220
Hpy166II	GTNNAC	3 cut(s)	403, 752, 882
Hpy188I	TCNGA	7 cut(s)	99, 132, 864, 1063, 1102, 1138, 1188
Hpy188III	TCNNGA	5 cut(s)	343, 518, 614, 773, 781
Hpy8I	GTNNAC	3 cut(s)	403, 752, 882
Hpy99I	CGWCG	2 cut(s)	17, 753
HpyAV	CCTTC	2 cut(s)	611, 802
HpyCH4III	ACNGT	3 cut(s)	69, 907, 928
HpyCH4IV	ACGT	2 cut(s)	648, 748
HpyCH4V	TGCA	4 cut(s)	602, 610, 955, 1069
HpyF10VI	GCNNNNNNNGC	5 cut(s)	176, 277, 599, 818, 917
HpyF3I	CTNAG	5 cut(s)	96, 180, 230, 256, 459
HpySE526I	ACGT	2 cut(s)	648, 748
Hsp92II	CATG	6 cut(s)	191, 442, 477, 642, 784, 880
HspAI	GCGC	2 cut(s)	838, 920
Ksp22I	TGATCA	2 cut(s)	1108, 1144
LmnI	GCTCC	3 cut(s)	184, 260, 796
Lsp1109I	GCAGC	2 cut(s)	614, 1081
LweI	GCATC	3 cut(s)	619, 995, 1181
MaeI	CTAG	1 cut(s)	1192
MaeII	ACGT	2 cut(s)	648, 748
MaeIII	GTNAC	1 cut(s)	208
MbiI	CCGCTC	1 cut(s)	846
MboII	GAAGA	7 cut(s)	175, 311, 559, 928, 955, 1063, 1066
MflI	RGATCY	3 cut(s)	141, 586, 769
MhlI	GDGCHC	2 cut(s)	693, 801
MluCI	AATT	1 cut(s)	1159
MlyI	GAGTC	2 cut(s)	1075, 1111
MmeI	TCCRAC	1 cut(s)	305
Mph1103I	ATGCAT	1 cut(s)	612
MslI	CAYNNNNRTG	1 cut(s)	991
MspA1I	CMGCKG	1 cut(s)	9
MspR9I	CCNGG	1 cut(s)	555
MvaI	CCWGG	1 cut(s)	555
MvnI	CGCG	1 cut(s)	280
MwoI	GCNNNNNNNGC	5 cut(s)	176, 277, 599, 818, 917
NlaIII	CATG	6 cut(s)	191, 442, 477, 642, 784, 880
NlaIV	GGNNCC	4 cut(s)	465, 588, 690, 930
NmeAIII	GCCGAG	1 cut(s)	1053
NmuCI	GTSAC	1 cut(s)	208
NsiI	ATGCAT	1 cut(s)	612
PagI	TCATGA	1 cut(s)	780
PfeI	GAWTC	3 cut(s)	41, 865, 1039
PkrI	GCNGC	3 cut(s)	11, 604, 1071
PleI	GAGTC	2 cut(s)	1075, 1111
PpsI	GAGTC	2 cut(s)	1075, 1111
Ppu21I	YACGTR	1 cut(s)	649
Psp124BI	GAGCTC	1 cut(s)	801
Psp6I	CCWGG	1 cut(s)	553
PspGI	CCWGG	1 cut(s)	553
PspN4I	GGNNCC	4 cut(s)	465, 588, 690, 930
PspPI	GGNCC	2 cut(s)	464, 928
PsuI	RGATCY	3 cut(s)	141, 586, 769
RsaI	GTAC	1 cut(s)	881
RsaNI	GTAC	1 cut(s)	880
RseI	CAYNNNNRTG	1 cut(s)	991
SacI	GAGCTC	1 cut(s)	801
SalI	GTCGAC	1 cut(s)	750
SatI	GCNGC	3 cut(s)	10, 603, 1070
Sau96I	GGNCC	2 cut(s)	464, 928
SchI	GAGTC	2 cut(s)	1075, 1111
ScrFI	CCNGG	1 cut(s)	555
SduI	GDGCHC	2 cut(s)	693, 801
SfaNI	GCATC	3 cut(s)	619, 995, 1181
SfcI	CTRYAG	1 cut(s)	21
SinI	GGWCC	1 cut(s)	928
SmiMI	CAYNNNNRTG	1 cut(s)	991
SmlI	CTYRAG	3 cut(s)	841, 974, 1043
SmoI	CTYRAG	3 cut(s)	841, 974, 1043
SnaBI	TACGTA	1 cut(s)	649
Sse9I	AATT	1 cut(s)	1159
SsiI	CCGC	5 cut(s)	9, 125, 269, 846, 984
SspMI	CTAG	1 cut(s)	1192
SstI	GAGCTC	1 cut(s)	801
StyD4I	CCNGG	1 cut(s)	553
StyI	CCWWGG	1 cut(s)	419
TaaI	ACNGT	3 cut(s)	69, 907, 928
TaiI	ACGT	2 cut(s)	651, 751
TaqI	TCGA	4 cut(s)	116, 577, 751, 1167
TaqII	GACCGA	1 cut(s)	69
TasI	AATT	1 cut(s)	1159
TatI	WGTACW	1 cut(s)	879
TauI	GCSGC	1 cut(s)	12
TfiI	GAWTC	3 cut(s)	41, 865, 1039
TseFI	GTSAC	1 cut(s)	208
TseI	GCWGC	2 cut(s)	602, 1069
Tsp45I	GTSAC	1 cut(s)	208
TspDTI	ATGAA	6 cut(s)	187, 204, 295, 427, 627, 963
TspGWI	ACGGA	1 cut(s)	1014
VpaK11BI	GGWCC	1 cut(s)	928
XagI	CCTNNNNNAGG	1 cut(s)	713
XmiI	GTMKAC	1 cut(s)	751
XspI	CTAG	1 cut(s)	1192
Zsp2I	ATGCAT	1 cut(s)	612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.